EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000024528 (Gene tree)
Gene ID: 67222
Gene Symbol: Srfbp1
Alias: 2810036K01Rik
Full Name: serum response factor binding protein 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 25046 bases
Position: chr18:52465693-52490738
Accession: 1914472
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000025406	BUD22	PF09073.10	4.6e-12	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000025406	-	1463	-	ENSMUSP00000025406	441 (aa)	-	Q9CZ91

Gene Model

Click here to download ENSMUSG00000024528's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000024528's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000024528	Srfbp1	98	66.821	ENSG00000151304	SRFBP1	100	66.821	Homo_sapiens
ENSMUSG00000024528	Srfbp1	97	64.569	ENSAMEG00000018050	SRFBP1	99	65.421	Ailuropoda_melanoleuca
ENSMUSG00000024528	Srfbp1	97	43.764	ENSACAG00000003779	SRFBP1	99	43.764	Anolis_carolinensis
ENSMUSG00000024528	Srfbp1	98	64.055	ENSANAG00000022485	SRFBP1	100	64.055	Aotus_nancymaae
ENSMUSG00000024528	Srfbp1	97	35.714	ENSACLG00000013909	-	90	35.758	Astatotilapia_calliptera
ENSMUSG00000024528	Srfbp1	98	63.889	ENSBTAG00000014320	SRFBP1	100	63.889	Bos_taurus
ENSMUSG00000024528	Srfbp1	98	65.589	ENSCJAG00000017177	SRFBP1	100	66.051	Callithrix_jacchus
ENSMUSG00000024528	Srfbp1	98	65.820	ENSCAFG00000000512	SRFBP1	100	66.513	Canis_familiaris
ENSMUSG00000024528	Srfbp1	98	65.820	ENSCAFG00020009389	SRFBP1	100	66.513	Canis_lupus_dingo
ENSMUSG00000024528	Srfbp1	95	45.107	ENSTSYG00000006869	-	99	45.107	Carlito_syrichta
ENSMUSG00000024528	Srfbp1	97	62.238	ENSTSYG00000008630	-	99	62.937	Carlito_syrichta
ENSMUSG00000024528	Srfbp1	98	63.825	ENSCPOG00000004695	SRFBP1	100	63.825	Cavia_porcellus
ENSMUSG00000024528	Srfbp1	98	64.747	ENSCCAG00000032237	-	100	65.438	Cebus_capucinus
ENSMUSG00000024528	Srfbp1	98	67.053	ENSCATG00000040904	SRFBP1	100	67.053	Cercocebus_atys
ENSMUSG00000024528	Srfbp1	98	64.286	ENSCLAG00000003630	SRFBP1	100	64.286	Chinchilla_lanigera
ENSMUSG00000024528	Srfbp1	98	63.448	ENSCSAG00000014636	SRFBP1	100	65.589	Chlorocebus_sabaeus
ENSMUSG00000024528	Srfbp1	98	66.821	ENSCANG00000041298	SRFBP1	100	66.667	Colobus_angolensis_palliatus
ENSMUSG00000024528	Srfbp1	100	76.644	ENSCGRG00001000718	Srfbp1	100	76.644	Cricetulus_griseus_chok1gshd
ENSMUSG00000024528	Srfbp1	94	75.240	ENSCGRG00000010837	Srfbp1	100	75.240	Cricetulus_griseus_crigri
ENSMUSG00000024528	Srfbp1	71	71.053	ENSCSEG00000011789	-	79	61.111	Cynoglossus_semilaevis
ENSMUSG00000024528	Srfbp1	96	38.657	ENSCVAG00000013010	-	97	39.583	Cyprinodon_variegatus
ENSMUSG00000024528	Srfbp1	73	51.613	ENSDARG00000075323	srfbp1	62	51.613	Danio_rerio
ENSMUSG00000024528	Srfbp1	78	57.225	ENSDNOG00000017733	SRFBP1	100	57.225	Dasypus_novemcinctus
ENSMUSG00000024528	Srfbp1	77	52.632	ENSETEG00000012408	SRFBP1	100	52.770	Echinops_telfairi
ENSMUSG00000024528	Srfbp1	76	46.923	ENSEBUG00000007806	SRFBP1	58	46.923	Eptatretus_burgeri
ENSMUSG00000024528	Srfbp1	98	67.130	ENSEASG00005012421	SRFBP1	100	67.130	Equus_asinus_asinus
ENSMUSG00000024528	Srfbp1	98	66.667	ENSECAG00000015330	SRFBP1	100	66.667	Equus_caballus
ENSMUSG00000024528	Srfbp1	98	57.044	ENSEEUG00000011514	SRFBP1	100	57.737	Erinaceus_europaeus
ENSMUSG00000024528	Srfbp1	97	36.739	ENSELUG00000018381	-	97	36.957	Esox_lucius
ENSMUSG00000024528	Srfbp1	98	66.204	ENSFCAG00000035118	SRFBP1	100	66.204	Felis_catus
ENSMUSG00000024528	Srfbp1	94	42.792	ENSFALG00000007595	SRFBP1	100	43.249	Ficedula_albicollis
ENSMUSG00000024528	Srfbp1	98	61.839	ENSFDAG00000005102	SRFBP1	100	61.839	Fukomys_damarensis
ENSMUSG00000024528	Srfbp1	77	66.667	ENSFHEG00000000477	-	87	36.893	Fundulus_heteroclitus
ENSMUSG00000024528	Srfbp1	67	60.345	ENSGMOG00000012729	-	85	34.174	Gadus_morhua
ENSMUSG00000024528	Srfbp1	97	41.087	ENSGALG00000005316	SRFBP1	99	40.870	Gallus_gallus
ENSMUSG00000024528	Srfbp1	74	66.667	ENSGAFG00000018777	-	72	66.667	Gambusia_affinis
ENSMUSG00000024528	Srfbp1	99	40.682	ENSGACG00000009055	-	85	39.775	Gasterosteus_aculeatus
ENSMUSG00000024528	Srfbp1	94	44.755	ENSGAGG00000024915	SRFBP1	99	44.622	Gopherus_agassizii
ENSMUSG00000024528	Srfbp1	98	67.053	ENSGGOG00000007725	SRFBP1	100	67.053	Gorilla_gorilla
ENSMUSG00000024528	Srfbp1	68	62.400	ENSHCOG00000020644	-	55	62.400	Hippocampus_comes
ENSMUSG00000024528	Srfbp1	99	65.760	ENSSTOG00000029184	SRFBP1	99	65.760	Ictidomys_tridecemlineatus
ENSMUSG00000024528	Srfbp1	94	62.500	ENSJJAG00000013229	Srfbp1	100	61.337	Jaculus_jaculus
ENSMUSG00000024528	Srfbp1	77	35.310	ENSLACG00000004456	SRFBP1	100	35.040	Latimeria_chalumnae
ENSMUSG00000024528	Srfbp1	97	42.082	ENSLOCG00000008772	SRFBP1	99	42.013	Lepisosteus_oculatus
ENSMUSG00000024528	Srfbp1	99	62.754	ENSLAFG00000015303	SRFBP1	100	62.754	Loxodonta_africana
ENSMUSG00000024528	Srfbp1	98	66.821	ENSMFAG00000031263	SRFBP1	100	66.821	Macaca_fascicularis
ENSMUSG00000024528	Srfbp1	98	67.053	ENSMMUG00000021009	SRFBP1	100	66.898	Macaca_mulatta
ENSMUSG00000024528	Srfbp1	98	66.821	ENSMNEG00000040870	SRFBP1	100	66.821	Macaca_nemestrina
ENSMUSG00000024528	Srfbp1	99	35.953	ENSMAMG00000004632	-	63	60.902	Mastacembelus_armatus
ENSMUSG00000024528	Srfbp1	97	36.439	ENSMZEG00005000432	-	90	36.475	Maylandia_zebra
ENSMUSG00000024528	Srfbp1	100	74.603	ENSMAUG00000009431	Srfbp1	100	74.603	Mesocricetus_auratus
ENSMUSG00000024528	Srfbp1	98	66.975	ENSMICG00000042923	SRFBP1	100	67.816	Microcebus_murinus
ENSMUSG00000024528	Srfbp1	100	76.471	ENSMOCG00000006206	Srfbp1	100	76.471	Microtus_ochrogaster
ENSMUSG00000024528	Srfbp1	98	53.333	ENSMODG00000013487	-	99	53.333	Monodelphis_domestica
ENSMUSG00000024528	Srfbp1	72	75.000	ENSMALG00000001812	-	72	76.667	Monopterus_albus
ENSMUSG00000024528	Srfbp1	100	94.558	MGP_CAROLIEiJ_G0022271	Srfbp1	100	94.558	Mus_caroli
ENSMUSG00000024528	Srfbp1	100	90.724	MGP_PahariEiJ_G0019004	Srfbp1	100	90.724	Mus_pahari
ENSMUSG00000024528	Srfbp1	100	96.825	MGP_SPRETEiJ_G0023184	Srfbp1	100	96.825	Mus_spretus
ENSMUSG00000024528	Srfbp1	94	65.865	ENSMPUG00000013031	SRFBP1	100	65.403	Mustela_putorius_furo
ENSMUSG00000024528	Srfbp1	97	63.721	ENSMLUG00000009984	SRFBP1	100	63.721	Myotis_lucifugus
ENSMUSG00000024528	Srfbp1	99	63.158	ENSNGAG00000013229	Srfbp1	99	63.158	Nannospalax_galili
ENSMUSG00000024528	Srfbp1	97	39.278	ENSNBRG00000001146	-	98	39.130	Neolamprologus_brichardi
ENSMUSG00000024528	Srfbp1	98	66.204	ENSNLEG00000011949	SRFBP1	100	66.204	Nomascus_leucogenys
ENSMUSG00000024528	Srfbp1	66	65.741	ENSOPRG00000003881	-	81	65.741	Ochotona_princeps
ENSMUSG00000024528	Srfbp1	94	60.143	ENSODEG00000007258	SRFBP1	100	60.143	Octodon_degus
ENSMUSG00000024528	Srfbp1	84	47.757	ENSOANG00000010042	-	99	47.757	Ornithorhynchus_anatinus
ENSMUSG00000024528	Srfbp1	99	63.556	ENSOCUG00000009556	SRFBP1	99	65.306	Oryctolagus_cuniculus
ENSMUSG00000024528	Srfbp1	97	36.929	ENSORLG00000014234	-	88	37.267	Oryzias_latipes
ENSMUSG00000024528	Srfbp1	67	57.724	ENSORLG00015000238	-	77	57.724	Oryzias_latipes_hsok
ENSMUSG00000024528	Srfbp1	97	63.721	ENSOGAG00000032423	SRFBP1	99	63.488	Otolemur_garnettii
ENSMUSG00000024528	Srfbp1	98	66.051	ENSPPAG00000035848	SRFBP1	100	66.357	Pan_paniscus
ENSMUSG00000024528	Srfbp1	98	65.741	ENSPPRG00000001695	SRFBP1	100	66.435	Panthera_pardus
ENSMUSG00000024528	Srfbp1	98	65.509	ENSPTIG00000012305	SRFBP1	100	66.204	Panthera_tigris_altaica
ENSMUSG00000024528	Srfbp1	98	66.589	ENSPTRG00000017172	SRFBP1	100	66.589	Pan_troglodytes
ENSMUSG00000024528	Srfbp1	98	66.125	ENSPANG00000003799	SRFBP1	100	66.435	Papio_anubis
ENSMUSG00000024528	Srfbp1	97	45.701	ENSPSIG00000010650	SRFBP1	99	45.475	Pelodiscus_sinensis
ENSMUSG00000024528	Srfbp1	98	54.214	ENSPCIG00000028532	SRFBP1	94	54.214	Phascolarctos_cinereus
ENSMUSG00000024528	Srfbp1	97	40.716	ENSPFOG00000005272	-	87	39.956	Poecilia_formosa
ENSMUSG00000024528	Srfbp1	76	60.784	ENSPLAG00000018282	-	87	36.983	Poecilia_latipinna
ENSMUSG00000024528	Srfbp1	96	37.190	ENSPMEG00000020184	-	88	37.372	Poecilia_mexicana
ENSMUSG00000024528	Srfbp1	96	41.570	ENSPREG00000017248	-	98	41.244	Poecilia_reticulata
ENSMUSG00000024528	Srfbp1	98	66.589	ENSPPYG00000015714	SRFBP1	100	66.589	Pongo_abelii
ENSMUSG00000024528	Srfbp1	98	67.130	ENSPCOG00000027331	SRFBP1	100	67.130	Propithecus_coquereli
ENSMUSG00000024528	Srfbp1	56	82.468	ENSPVAG00000017512	-	58	82.468	Pteropus_vampyrus
ENSMUSG00000024528	Srfbp1	72	72.727	ENSPNYG00000010355	-	99	39.492	Pundamilia_nyererei
ENSMUSG00000024528	Srfbp1	69	53.731	ENSPNAG00000029666	srfbp1	95	46.341	Pygocentrus_nattereri
ENSMUSG00000024528	Srfbp1	100	80.769	ENSRNOG00000014808	Srfbp1	100	80.769	Rattus_norvegicus
ENSMUSG00000024528	Srfbp1	95	62.857	ENSRBIG00000031064	SRFBP1	99	62.857	Rhinopithecus_bieti
ENSMUSG00000024528	Srfbp1	98	67.053	ENSRROG00000026932	SRFBP1	100	67.053	Rhinopithecus_roxellana
ENSMUSG00000024528	Srfbp1	98	65.509	ENSSBOG00000015464	-	99	65.278	Saimiri_boliviensis_boliviensis
ENSMUSG00000024528	Srfbp1	98	54.670	ENSSHAG00000016003	SRFBP1	99	53.864	Sarcophilus_harrisii
ENSMUSG00000024528	Srfbp1	97	36.920	ENSSFOG00015001274	srfbp1	99	37.395	Scleropages_formosus
ENSMUSG00000024528	Srfbp1	69	64.000	ENSSMAG00000020630	-	59	64.000	Scophthalmus_maximus
ENSMUSG00000024528	Srfbp1	71	61.654	ENSSDUG00000001828	-	61	61.654	Seriola_dumerili
ENSMUSG00000024528	Srfbp1	98	63.825	ENSSARG00000010669	SRFBP1	100	65.207	Sorex_araneus
ENSMUSG00000024528	Srfbp1	95	43.182	ENSSPUG00000009204	SRFBP1	99	42.955	Sphenodon_punctatus
ENSMUSG00000024528	Srfbp1	98	66.125	ENSSSCG00000022656	SRFBP1	100	66.125	Sus_scrofa
ENSMUSG00000024528	Srfbp1	99	41.031	ENSTNIG00000009267	-	99	42.257	Tetraodon_nigroviridis
ENSMUSG00000024528	Srfbp1	73	70.270	ENSTTRG00000007726	SRFBP1	77	70.270	Tursiops_truncatus
ENSMUSG00000024528	Srfbp1	94	67.386	ENSUAMG00000016707	SRFBP1	100	67.866	Ursus_americanus
ENSMUSG00000024528	Srfbp1	95	67.064	ENSUMAG00000018340	SRFBP1	100	64.066	Ursus_maritimus
ENSMUSG00000024528	Srfbp1	98	64.965	ENSVPAG00000005714	SRFBP1	100	65.197	Vicugna_pacos
ENSMUSG00000024528	Srfbp1	98	66.051	ENSVVUG00000019178	SRFBP1	100	66.051	Vulpes_vulpes
ENSMUSG00000024528	Srfbp1	97	42.472	ENSXETG00000004681	srfbp1	99	42.472	Xenopus_tropicalis
ENSMUSG00000024528	Srfbp1	75	65.000	ENSXCOG00000003410	-	99	39.148	Xiphophorus_couchianus
ENSMUSG00000024528	Srfbp1	96	39.130	ENSXMAG00000026251	-	86	39.381	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005515	protein binding	17931718.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	15492011.	IDA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0030490	maturation of SSU-rRNA	21873635.	IBA	Process
GO:0030686	90S preribosome	21873635.	IBA	Component