EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000024561 (Gene tree)
Gene ID: 17190
Gene Symbol: Mbd1
Alias: Cxxc3|PCM1
Full Name: methyl-CpG binding domain protein 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 15128 bases
Position: chr18:74267605-74282732
Accession: 1333811
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000095137	MBD	PF01429.19	5.5e-18	1	1
ENSMUSP00000153428	MBD	PF01429.19	6.2e-18	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000224159	-	1145	-	-	- (aa)	-	-
ENSMUST00000224907	-	1349	-	-	- (aa)	-	-
ENSMUST00000097530	-	2833	XM_006525708	ENSMUSP00000095137	588 (aa)	XP_006525771	A0A0R4J159
ENSMUST00000224047	-	2838	XM_006525704	ENSMUSP00000153428	644 (aa)	XP_006525767	A0A286YDI1
ENSMUST00000224332	-	3920	XM_017317845	ENSMUSP00000153085	467 (aa)	XP_017173334	A0A286YCP6

Gene Model

Click here to download ENSMUSG00000024561's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000024561's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000024561	Mbd1	97	68.371	ENSG00000141644	MBD1	99	77.515	Homo_sapiens
ENSMUSG00000024561	Mbd1	97	63.389	ENSAMEG00000000238	MBD1	95	64.885	Ailuropoda_melanoleuca
ENSMUSG00000024561	Mbd1	63	39.910	ENSACAG00000006091	-	63	43.071	Anolis_carolinensis
ENSMUSG00000024561	Mbd1	100	67.180	ENSANAG00000036253	MBD1	100	66.061	Aotus_nancymaae
ENSMUSG00000024561	Mbd1	100	63.516	ENSBTAG00000003801	MBD1	99	65.610	Bos_taurus
ENSMUSG00000024561	Mbd1	97	67.252	ENSCJAG00000004959	MBD1	99	63.063	Callithrix_jacchus
ENSMUSG00000024561	Mbd1	98	71.626	ENSCAFG00000018928	MBD1	95	64.220	Canis_familiaris
ENSMUSG00000024561	Mbd1	100	64.487	ENSCAFG00020024272	MBD1	100	65.082	Canis_lupus_dingo
ENSMUSG00000024561	Mbd1	97	64.865	ENSCHIG00000021134	MBD1	99	65.293	Capra_hircus
ENSMUSG00000024561	Mbd1	98	66.038	ENSTSYG00000000509	MBD1	99	63.761	Carlito_syrichta
ENSMUSG00000024561	Mbd1	100	58.404	ENSCAPG00000015782	MBD1	100	58.108	Cavia_aperea
ENSMUSG00000024561	Mbd1	100	61.890	ENSCPOG00000001671	MBD1	99	59.346	Cavia_porcellus
ENSMUSG00000024561	Mbd1	97	65.625	ENSCCAG00000034600	MBD1	99	60.033	Cebus_capucinus
ENSMUSG00000024561	Mbd1	97	68.471	ENSCATG00000029959	MBD1	99	67.568	Cercocebus_atys
ENSMUSG00000024561	Mbd1	97	65.084	ENSCLAG00000007457	MBD1	87	65.237	Chinchilla_lanigera
ENSMUSG00000024561	Mbd1	97	68.153	ENSCSAG00000018070	MBD1	99	67.568	Chlorocebus_sabaeus
ENSMUSG00000024561	Mbd1	97	68.153	ENSCANG00000033425	MBD1	84	82.895	Colobus_angolensis_palliatus
ENSMUSG00000024561	Mbd1	100	75.851	ENSCGRG00001014843	Mbd1	100	75.851	Cricetulus_griseus_chok1gshd
ENSMUSG00000024561	Mbd1	100	68.528	ENSCGRG00000014135	Mbd1	100	68.528	Cricetulus_griseus_crigri
ENSMUSG00000024561	Mbd1	89	70.934	ENSDNOG00000015998	MBD1	100	61.516	Dasypus_novemcinctus
ENSMUSG00000024561	Mbd1	100	63.682	ENSDORG00000013917	Mbd1	100	63.682	Dipodomys_ordii
ENSMUSG00000024561	Mbd1	100	64.636	ENSEASG00005003857	MBD1	100	65.676	Equus_asinus_asinus
ENSMUSG00000024561	Mbd1	100	64.487	ENSECAG00000011497	MBD1	81	65.527	Equus_caballus
ENSMUSG00000024561	Mbd1	100	64.985	ENSFCAG00000015730	MBD1	99	64.580	Felis_catus
ENSMUSG00000024561	Mbd1	98	61.591	ENSFDAG00000011085	MBD1	98	62.098	Fukomys_damarensis
ENSMUSG00000024561	Mbd1	97	68.371	ENSGGOG00000016966	MBD1	99	67.727	Gorilla_gorilla
ENSMUSG00000024561	Mbd1	96	68.590	ENSHGLG00000008740	MBD1	98	68.750	Heterocephalus_glaber_female
ENSMUSG00000024561	Mbd1	96	61.189	ENSHGLG00100005198	MBD1	98	62.994	Heterocephalus_glaber_male
ENSMUSG00000024561	Mbd1	100	66.819	ENSSTOG00000007780	MBD1	100	67.123	Ictidomys_tridecemlineatus
ENSMUSG00000024561	Mbd1	100	66.385	ENSJJAG00000022859	Mbd1	100	66.385	Jaculus_jaculus
ENSMUSG00000024561	Mbd1	100	59.168	ENSLAFG00000031328	MBD1	100	59.476	Loxodonta_africana
ENSMUSG00000024561	Mbd1	97	68.471	ENSMFAG00000026335	MBD1	99	67.568	Macaca_fascicularis
ENSMUSG00000024561	Mbd1	97	65.850	ENSMMUG00000009050	MBD1	99	64.985	Macaca_mulatta
ENSMUSG00000024561	Mbd1	97	68.471	ENSMNEG00000038822	MBD1	99	67.568	Macaca_nemestrina
ENSMUSG00000024561	Mbd1	97	68.471	ENSMLEG00000043121	MBD1	99	67.568	Mandrillus_leucophaeus
ENSMUSG00000024561	Mbd1	97	68.304	ENSMICG00000006414	MBD1	99	67.670	Microcebus_murinus
ENSMUSG00000024561	Mbd1	51	72.757	ENSMOCG00000011976	-	97	72.425	Microtus_ochrogaster
ENSMUSG00000024561	Mbd1	100	85.956	MGP_PahariEiJ_G0019128	Mbd1	100	85.956	Mus_pahari
ENSMUSG00000024561	Mbd1	96	96.940	MGP_SPRETEiJ_G0023304	Mbd1	99	96.940	Mus_spretus
ENSMUSG00000024561	Mbd1	97	62.443	ENSMPUG00000008843	MBD1	95	63.053	Mustela_putorius_furo
ENSMUSG00000024561	Mbd1	97	62.577	ENSMLUG00000008286	MBD1	95	62.730	Myotis_lucifugus
ENSMUSG00000024561	Mbd1	100	67.742	ENSNGAG00000011412	Mbd1	100	67.742	Nannospalax_galili
ENSMUSG00000024561	Mbd1	96	59.507	ENSNLEG00000032711	-	89	60.105	Nomascus_leucogenys
ENSMUSG00000024561	Mbd1	97	67.732	ENSNLEG00000011661	-	99	67.091	Nomascus_leucogenys
ENSMUSG00000024561	Mbd1	97	59.236	ENSOPRG00000007647	MBD1	99	59.236	Ochotona_princeps
ENSMUSG00000024561	Mbd1	100	65.313	ENSODEG00000018451	MBD1	100	65.313	Octodon_degus
ENSMUSG00000024561	Mbd1	84	40.536	ENSOANG00000014593	-	99	40.036	Ornithorhynchus_anatinus
ENSMUSG00000024561	Mbd1	97	61.774	ENSOCUG00000006554	MBD1	99	62.385	Oryctolagus_cuniculus
ENSMUSG00000024561	Mbd1	97	63.801	ENSOGAG00000003784	MBD1	95	63.952	Otolemur_garnettii
ENSMUSG00000024561	Mbd1	97	62.443	ENSOARG00000004218	MBD1	94	62.861	Ovis_aries
ENSMUSG00000024561	Mbd1	97	68.530	ENSPPAG00000038886	MBD1	99	67.886	Pan_paniscus
ENSMUSG00000024561	Mbd1	97	66.401	ENSPPRG00000021387	MBD1	99	67.143	Panthera_pardus
ENSMUSG00000024561	Mbd1	97	66.561	ENSPTIG00000021231	MBD1	99	67.302	Panthera_tigris_altaica
ENSMUSG00000024561	Mbd1	97	68.471	ENSPTRG00000010021	MBD1	99	67.886	Pan_troglodytes
ENSMUSG00000024561	Mbd1	97	68.530	ENSPANG00000010867	MBD1	99	64.985	Papio_anubis
ENSMUSG00000024561	Mbd1	100	71.356	ENSPEMG00000022630	Mbd1	100	71.186	Peromyscus_maniculatus_bairdii
ENSMUSG00000024561	Mbd1	95	42.006	ENSPCIG00000027937	-	74	71.795	Phascolarctos_cinereus
ENSMUSG00000024561	Mbd1	97	67.834	ENSPPYG00000009158	MBD1	90	67.250	Pongo_abelii
ENSMUSG00000024561	Mbd1	96	59.904	ENSPCAG00000001648	MBD1	98	59.904	Procavia_capensis
ENSMUSG00000024561	Mbd1	98	68.603	ENSPCOG00000012450	MBD1	99	70.739	Propithecus_coquereli
ENSMUSG00000024561	Mbd1	100	67.395	ENSRNOG00000024104	Mbd1	100	72.156	Rattus_norvegicus
ENSMUSG00000024561	Mbd1	97	61.306	ENSRBIG00000041294	MBD1	99	60.890	Rhinopithecus_bieti
ENSMUSG00000024561	Mbd1	97	67.834	ENSRROG00000032517	MBD1	99	67.250	Rhinopithecus_roxellana
ENSMUSG00000024561	Mbd1	97	66.826	ENSSBOG00000027169	MBD1	99	60.368	Saimiri_boliviensis_boliviensis
ENSMUSG00000024561	Mbd1	100	64.606	ENSSSCG00000004516	MBD1	100	64.760	Sus_scrofa
ENSMUSG00000024561	Mbd1	68	59.583	ENSTBEG00000012651	-	68	59.583	Tupaia_belangeri
ENSMUSG00000024561	Mbd1	97	64.501	ENSTTRG00000015523	MBD1	99	64.501	Tursiops_truncatus
ENSMUSG00000024561	Mbd1	100	63.650	ENSUAMG00000004752	MBD1	99	64.921	Ursus_americanus
ENSMUSG00000024561	Mbd1	97	65.723	ENSUMAG00000002947	MBD1	99	67.460	Ursus_maritimus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0000785	chromatin	9774669.	IDA	Component
GO:0000790	nuclear chromatin	-	ISO	Component
GO:0000792	heterochromatin	14519686.	IDA	Component
GO:0003677	DNA binding	9774669.	IDA	Function
GO:0003682	chromatin binding	-	ISO	Function
GO:0005515	protein binding	15777793.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	9774669.17546630.18604195.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005730	nucleolus	17546630.	IDA	Component
GO:0005737	cytoplasm	17546630.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006346	methylation-dependent chromatin silencing	21873635.	IBA	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0008327	methyl-CpG binding	21873635.	IBA	Function
GO:0008327	methyl-CpG binding	-	ISO	Function
GO:0010385	double-stranded methylated DNA binding	11371345.	ISO	Function
GO:0010629	negative regulation of gene expression	-	ISO	Process
GO:0016363	nuclear matrix	15777793.	IDA	Component
GO:0016607	nuclear speck	15777793.	IDA	Component
GO:0046872	metal ion binding	-	IEA	Function
GO:0048712	negative regulation of astrocyte differentiation	-	ISO	Process