EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000024613 (Gene tree)
Gene ID: 21453
Gene Symbol: Tcof1
Alias: treacle
Full Name: treacle ribosome biogenesis factor 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 35217
Position: chr18: 60813755-60848971
Accession: 892003
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000175934	-	4595	XM_006525777	ENSMUSP00000135639	1356 (aa)	XP_006525840	H3BL37
ENSMUST00000177343	-	582	-	ENSMUSP00000135295	167 (aa)	-	H3BK88
ENSMUST00000177172	-	3229	-	ENSMUSP00000134755	1056 (aa)	-	H3BIX0
ENSMUST00000176088	-	865	-	-	- (aa)	-	-
ENSMUST00000176630	-	4529	XM_011246875	ENSMUSP00000135476	1320 (aa)	XP_011245177	O08784
ENSMUST00000163446	-	4064	-	ENSMUSP00000130454	1013 (aa)	-	F6R3V4

Gene Model

Click here to download ENSMUSG00000024613's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000024613's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000024613	Tcof1	100	57.407	ENSG00000070814	TCOF1	91	82.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001042	RNA polymerase I core binding	-	ISO	Function
GO:0001650	fibrillar center	-	ISO	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006417	regulation of translation	-	ISO	Process
GO:0014029	neural crest formation	-	ISO	Process
GO:0014032	neural crest cell development	-	ISO	Process
GO:0042790	nucleolar large rRNA transcription by RNA polymerase I	15249688.	IMP	Process
GO:0046982	protein heterodimerization activity	-	ISO	Function
GO:0097110	scaffold protein binding	-	ISO	Function