EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000024740 (Gene tree)
Gene ID
13194
Gene Symbol
Ddb1
Alias
DNA repair protein|damage-specific DNA-binding protein|DNA repair|p127-Ddb1
Full Name
damage specific DNA binding protein 1
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
24189 bases
Position
chr19:10605625-10629813
Accession
1202384
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000025649CPSF_APF03178.158.4e-8611
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27768875High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem CellsnIC & mESC2016.09He CDOI: 10.1016/j.molcel.2016.09.034
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000025649-4155XM_006526639ENSMUSP000000256491140 (aa)XP_006526702Q3U1J4
Gene Model
Click here to download ENSMUSG00000024740's gene model file
Pathways
Pathway IDPathway NameSource
mmu03420Nucleotide excision repairKEGG
mmu04120Ubiquitin mediated proteolysisKEGG
mmu05161Hepatitis BKEGG
mmu05170Human immunodeficiency virus 1 infectionKEGG
mmu05203Viral carcinogenesisKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000024740's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000024740Ddb110099.649ENSG00000167986DDB1100100.000Homo_sapiens
ENSMUSG00000024740Ddb19891.554ENSAPOG00000005036ddb19991.633Acanthochromis_polyacanthus
ENSMUSG00000024740Ddb110099.737ENSAMEG00000016518DDB110099.737Ailuropoda_melanoleuca
ENSMUSG00000024740Ddb18691.939ENSACIG00000020624ddb19991.939Amphilophus_citrinellus
ENSMUSG00000024740Ddb110091.228ENSAOCG00000003066ddb110091.228Amphiprion_ocellaris
ENSMUSG00000024740Ddb110091.316ENSAPEG00000000092ddb110091.316Amphiprion_percula
ENSMUSG00000024740Ddb19491.814ENSATEG00000020571ddb19791.814Anabas_testudineus
ENSMUSG00000024740Ddb19896.444ENSAPLG00000007174DDB19996.444Anas_platyrhynchos
ENSMUSG00000024740Ddb110096.930ENSACAG00000017758DDB110096.930Anolis_carolinensis
ENSMUSG00000024740Ddb110099.649ENSANAG00000021878DDB110099.649Aotus_nancymaae
ENSMUSG00000024740Ddb110091.579ENSACLG00000012401ddb110091.579Astatotilapia_calliptera
ENSMUSG00000024740Ddb110099.561ENSBTAG00000021569DDB19399.561Bos_taurus
ENSMUSG00000024740Ddb110037.211WBGene00010890ddb-110037.126Caenorhabditis_elegans
ENSMUSG00000024740Ddb110099.649ENSCJAG00000019319DDB110099.649Callithrix_jacchus
ENSMUSG00000024740Ddb110099.737ENSCAFG00000016264DDB110099.737Canis_familiaris
ENSMUSG00000024740Ddb19499.442ENSCAFG00020012722DDB19999.442Canis_lupus_dingo
ENSMUSG00000024740Ddb110099.561ENSCHIG00000014969DDB110099.561Capra_hircus
ENSMUSG00000024740Ddb110099.035ENSTSYG00000008027DDB110099.035Carlito_syrichta
ENSMUSG00000024740Ddb19899.017ENSCAPG00000010786DDB110099.017Cavia_aperea
ENSMUSG00000024740Ddb110099.035ENSCPOG00000009956DDB110099.035Cavia_porcellus
ENSMUSG00000024740Ddb110099.649ENSCCAG00000035883DDB110099.649Cebus_capucinus
ENSMUSG00000024740Ddb110097.135ENSCATG00000044495DDB110097.135Cercocebus_atys
ENSMUSG00000024740Ddb110099.123ENSCLAG00000004126DDB110099.123Chinchilla_lanigera
ENSMUSG00000024740Ddb110099.649ENSCSAG00000006392DDB110099.649Chlorocebus_sabaeus
ENSMUSG00000024740Ddb18892.424ENSCHOG00000011377DDB19092.424Choloepus_hoffmanni
ENSMUSG00000024740Ddb110097.632ENSCPBG00000017728DDB110097.632Chrysemys_picta_bellii
ENSMUSG00000024740Ddb110061.892ENSCING00000007437-10061.806Ciona_intestinalis
ENSMUSG00000024740Ddb19460.184ENSCSAVG00000004783-10060.184Ciona_savignyi
ENSMUSG00000024740Ddb110099.649ENSCANG00000019948DDB110099.649Colobus_angolensis_palliatus
ENSMUSG00000024740Ddb110099.737ENSCGRG00001016599Ddb110099.737Cricetulus_griseus_chok1gshd
ENSMUSG00000024740Ddb110099.737ENSCGRG00000013427Ddb110099.737Cricetulus_griseus_crigri
ENSMUSG00000024740Ddb19391.329ENSCSEG00000012499ddb19989.777Cynoglossus_semilaevis
ENSMUSG00000024740Ddb19491.519ENSCVAG00000019531ddb19991.519Cyprinodon_variegatus
ENSMUSG00000024740Ddb110088.354ENSDARG00000074431ddb110088.472Danio_rerio
ENSMUSG00000024740Ddb19499.070ENSDNOG00000014884DDB19799.070Dasypus_novemcinctus
ENSMUSG00000024740Ddb184100.000ENSDORG00000000127Ddb1100100.000Dipodomys_ordii
ENSMUSG00000024740Ddb110061.048FBgn0260962pic10060.839Drosophila_melanogaster
ENSMUSG00000024740Ddb171100.000ENSETEG00000001053-71100.000Echinops_telfairi
ENSMUSG00000024740Ddb17884.927ENSEBUG00000014593ddb19784.927Eptatretus_burgeri
ENSMUSG00000024740Ddb110099.561ENSEASG00005008184DDB110099.561Equus_asinus_asinus
ENSMUSG00000024740Ddb110099.561ENSECAG00000012136DDB110099.561Equus_caballus
ENSMUSG00000024740Ddb18597.306ENSEEUG00000003194DDB18597.306Erinaceus_europaeus
ENSMUSG00000024740Ddb110091.316ENSELUG00000023868ddb110091.316Esox_lucius
ENSMUSG00000024740Ddb110099.737ENSFCAG00000029716DDB110099.737Felis_catus
ENSMUSG00000024740Ddb110096.850ENSFALG00000011981DDB110096.850Ficedula_albicollis
ENSMUSG00000024740Ddb110099.035ENSFDAG00000005128DDB110099.035Fukomys_damarensis
ENSMUSG00000024740Ddb19090.588ENSFHEG00000022133ddb19890.802Fundulus_heteroclitus
ENSMUSG00000024740Ddb17994.649ENSGMOG00000019386ddb19494.649Gadus_morhua
ENSMUSG00000024740Ddb110097.018ENSGALG00000042333DDB110097.018Gallus_gallus
ENSMUSG00000024740Ddb19491.333ENSGAFG00000013142ddb19991.333Gambusia_affinis
ENSMUSG00000024740Ddb19690.742ENSGACG00000017182ddb110090.742Gasterosteus_aculeatus
ENSMUSG00000024740Ddb19597.694ENSGAGG00000014124DDB110097.694Gopherus_agassizii
ENSMUSG00000024740Ddb110099.649ENSGGOG00000004052DDB110099.649Gorilla_gorilla
ENSMUSG00000024740Ddb110091.579ENSHBUG00000008873ddb110091.579Haplochromis_burtoni
ENSMUSG00000024740Ddb110098.947ENSHGLG00000018430DDB110098.947Heterocephalus_glaber_female
ENSMUSG00000024740Ddb110097.895ENSHGLG00100014475DDB110097.895Heterocephalus_glaber_male
ENSMUSG00000024740Ddb19491.078ENSHCOG00000018670ddb19891.078Hippocampus_comes
ENSMUSG00000024740Ddb110090.614ENSIPUG00000005612DDB110090.614Ictalurus_punctatus
ENSMUSG00000024740Ddb110099.649ENSSTOG00000007552DDB110099.649Ictidomys_tridecemlineatus
ENSMUSG00000024740Ddb110099.474ENSJJAG00000017769Ddb110099.474Jaculus_jaculus
ENSMUSG00000024740Ddb19491.426ENSKMAG00000002315ddb19991.426Kryptolebias_marmoratus
ENSMUSG00000024740Ddb18591.606ENSLBEG00000017065ddb19991.606Labrus_bergylta
ENSMUSG00000024740Ddb110093.520ENSLACG00000017611DDB110093.520Latimeria_chalumnae
ENSMUSG00000024740Ddb19283.333ENSLOCG00000000012ddb110083.333Lepisosteus_oculatus
ENSMUSG00000024740Ddb110099.474ENSLAFG00000011513DDB110099.474Loxodonta_africana
ENSMUSG00000024740Ddb110099.649ENSMFAG00000042035DDB110099.649Macaca_fascicularis
ENSMUSG00000024740Ddb19999.646ENSMMUG00000002691DDB19999.646Macaca_mulatta
ENSMUSG00000024740Ddb110099.649ENSMNEG00000031559DDB110099.649Macaca_nemestrina
ENSMUSG00000024740Ddb110099.649ENSMLEG00000044136DDB110099.649Mandrillus_leucophaeus
ENSMUSG00000024740Ddb110091.579ENSMAMG00000014372ddb110091.579Mastacembelus_armatus
ENSMUSG00000024740Ddb110091.491ENSMZEG00005013835ddb110091.491Maylandia_zebra
ENSMUSG00000024740Ddb19496.369ENSMGAG00000004990DDB110096.369Meleagris_gallopavo
ENSMUSG00000024740Ddb110099.737ENSMAUG00000012926Ddb110099.737Mesocricetus_auratus
ENSMUSG00000024740Ddb110099.649ENSMICG00000013703DDB110099.649Microcebus_murinus
ENSMUSG00000024740Ddb110099.474ENSMOCG00000020499Ddb110099.474Microtus_ochrogaster
ENSMUSG00000024740Ddb18691.939ENSMMOG00000001758ddb19991.939Mola_mola
ENSMUSG00000024740Ddb110089.273ENSMODG00000020353DDB110089.273Monodelphis_domestica
ENSMUSG00000024740Ddb110091.579ENSMALG00000014071ddb110091.579Monopterus_albus
ENSMUSG00000024740Ddb110099.825MGP_CAROLIEiJ_G0022695Ddb110099.825Mus_caroli
ENSMUSG00000024740Ddb110099.825MGP_PahariEiJ_G0014189Ddb110099.825Mus_pahari
ENSMUSG00000024740Ddb110099.912MGP_SPRETEiJ_G0023609Ddb110099.912Mus_spretus
ENSMUSG00000024740Ddb110096.404ENSMPUG00000014200DDB110096.404Mustela_putorius_furo
ENSMUSG00000024740Ddb110099.386ENSMLUG00000013232DDB110099.386Myotis_lucifugus
ENSMUSG00000024740Ddb110099.298ENSNGAG00000009384Ddb110099.298Nannospalax_galili
ENSMUSG00000024740Ddb110091.667ENSNBRG00000019581ddb110091.667Neolamprologus_brichardi
ENSMUSG00000024740Ddb110096.528ENSNLEG00000002022DDB110096.528Nomascus_leucogenys
ENSMUSG00000024740Ddb19199.296ENSMEUG00000001099DDB19399.296Notamacropus_eugenii
ENSMUSG00000024740Ddb19091.077ENSOPRG00000008254DDB19091.077Ochotona_princeps
ENSMUSG00000024740Ddb110098.947ENSODEG00000002419DDB110098.947Octodon_degus
ENSMUSG00000024740Ddb110091.579ENSONIG00000005804ddb110091.579Oreochromis_niloticus
ENSMUSG00000024740Ddb19197.965ENSOANG00000004897DDB110097.965Ornithorhynchus_anatinus
ENSMUSG00000024740Ddb110099.649ENSOCUG00000001667DDB110099.649Oryctolagus_cuniculus
ENSMUSG00000024740Ddb19690.009ENSORLG00000001399ddb19891.258Oryzias_latipes
ENSMUSG00000024740Ddb19689.918ENSORLG00020001277ddb19789.918Oryzias_latipes_hni
ENSMUSG00000024740Ddb19491.070ENSORLG00015002080ddb19991.070Oryzias_latipes_hsok
ENSMUSG00000024740Ddb19689.881ENSOMEG00000006181ddb19989.881Oryzias_melastigma
ENSMUSG00000024740Ddb110099.474ENSOGAG00000016103DDB110099.474Otolemur_garnettii
ENSMUSG00000024740Ddb19999.555ENSOARG00000011716DDB19899.555Ovis_aries
ENSMUSG00000024740Ddb110099.649ENSPPAG00000035343DDB110099.649Pan_paniscus
ENSMUSG00000024740Ddb110099.737ENSPPRG00000013300DDB110099.737Panthera_pardus
ENSMUSG00000024740Ddb19899.732ENSPTIG00000006909DDB19899.732Panthera_tigris_altaica
ENSMUSG00000024740Ddb110099.649ENSPTRG00000003737DDB110099.649Pan_troglodytes
ENSMUSG00000024740Ddb110099.649ENSPANG00000000242DDB110099.649Papio_anubis
ENSMUSG00000024740Ddb19491.426ENSPKIG00000019213ddb19491.426Paramormyrops_kingsleyae
ENSMUSG00000024740Ddb19896.975ENSPSIG00000013275DDB110096.975Pelodiscus_sinensis
ENSMUSG00000024740Ddb18691.633ENSPMGG00000021179ddb19991.633Periophthalmus_magnuspinnatus
ENSMUSG00000024740Ddb110099.737ENSPEMG00000012241Ddb110099.737Peromyscus_maniculatus_bairdii
ENSMUSG00000024740Ddb18986.837ENSPMAG00000008479ddb110086.837Petromyzon_marinus
ENSMUSG00000024740Ddb110098.947ENSPCIG00000002643DDB110098.947Phascolarctos_cinereus
ENSMUSG00000024740Ddb110090.973ENSPFOG00000002768ddb110090.973Poecilia_formosa
ENSMUSG00000024740Ddb110090.789ENSPLAG00000017227ddb110090.789Poecilia_latipinna
ENSMUSG00000024740Ddb110090.789ENSPMEG00000011398ddb110090.789Poecilia_mexicana
ENSMUSG00000024740Ddb19491.442ENSPREG00000004440ddb19891.442Poecilia_reticulata
ENSMUSG00000024740Ddb110094.677ENSPPYG00000003193DDB110094.677Pongo_abelii
ENSMUSG00000024740Ddb18599.254ENSPCAG00000011040DDB18599.254Procavia_capensis
ENSMUSG00000024740Ddb110098.074ENSPCOG00000015176DDB110098.074Propithecus_coquereli
ENSMUSG00000024740Ddb110099.561ENSPVAG00000003847DDB110099.561Pteropus_vampyrus
ENSMUSG00000024740Ddb19491.426ENSPNAG00000006635ddb19791.426Pygocentrus_nattereri
ENSMUSG00000024740Ddb110099.649ENSRNOG00000020715Ddb110099.649Rattus_norvegicus
ENSMUSG00000024740Ddb110099.649ENSRBIG00000033611DDB110099.649Rhinopithecus_bieti
ENSMUSG00000024740Ddb110099.649ENSRROG00000041407DDB110099.649Rhinopithecus_roxellana
ENSMUSG00000024740Ddb110099.561ENSSBOG00000019775DDB110099.561Saimiri_boliviensis_boliviensis
ENSMUSG00000024740Ddb19497.009ENSSHAG00000011600DDB110097.009Sarcophilus_harrisii
ENSMUSG00000024740Ddb19491.543ENSSFOG00015011151ddb19791.543Scleropages_formosus
ENSMUSG00000024740Ddb110091.140ENSSMAG00000009495ddb110091.140Scophthalmus_maximus
ENSMUSG00000024740Ddb110091.491ENSSDUG00000004642ddb110091.491Seriola_dumerili
ENSMUSG00000024740Ddb110091.491ENSSLDG00000015804ddb110091.491Seriola_lalandi_dorsalis
ENSMUSG00000024740Ddb170100.000ENSSARG00000003290-72100.000Sorex_araneus
ENSMUSG00000024740Ddb110097.807ENSSPUG00000019338DDB110097.807Sphenodon_punctatus
ENSMUSG00000024740Ddb19491.721ENSSPAG00000009888ddb19991.721Stegastes_partitus
ENSMUSG00000024740Ddb110098.684ENSSSCG00000013094DDB110098.684Sus_scrofa
ENSMUSG00000024740Ddb110097.018ENSTGUG00000006414DDB110097.018Taeniopygia_guttata
ENSMUSG00000024740Ddb19490.308ENSTRUG00000016682ddb19890.308Takifugu_rubripes
ENSMUSG00000024740Ddb18885.030ENSTNIG00000009565ddb19985.030Tetraodon_nigroviridis
ENSMUSG00000024740Ddb19294.517ENSTTRG00000011055DDB19494.517Tursiops_truncatus
ENSMUSG00000024740Ddb19499.442ENSUAMG00000017793DDB19399.442Ursus_americanus
ENSMUSG00000024740Ddb19499.442ENSUMAG00000011788DDB19899.442Ursus_maritimus
ENSMUSG00000024740Ddb190100.000ENSVPAG00000007963DDB192100.000Vicugna_pacos
ENSMUSG00000024740Ddb110099.649ENSVVUG00000004987DDB110099.649Vulpes_vulpes
ENSMUSG00000024740Ddb110093.182ENSXETG00000008820ddb110093.182Xenopus_tropicalis
ENSMUSG00000024740Ddb18691.429ENSXCOG00000013956ddb19991.429Xiphophorus_couchianus
ENSMUSG00000024740Ddb19491.333ENSXMAG00000000022ddb19991.333Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003676nucleic acid binding-IEAFunction
GO:0003677DNA binding-IEAFunction
GO:0003684damaged DNA binding21873635.IBAFunction
GO:0003684damaged DNA binding-ISOFunction
GO:0003684damaged DNA binding-ISOFunction
GO:0005515protein binding24855944.26323038.27123980.IPIFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus-ISOComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005737cytoplasm-ISOComponent
GO:0006281DNA repair-IEAProcess
GO:0006511ubiquitin-dependent protein catabolic process26431207.IMPProcess
GO:0006511ubiquitin-dependent protein catabolic process-ISOProcess
GO:0006974cellular response to DNA damage stimulus-ISOProcess
GO:0010498proteasomal protein catabolic process25970626.ISOProcess
GO:0016055Wnt signaling pathway19056892.IDAProcess
GO:0016567protein ubiquitination26431207.IMPProcess
GO:0016567protein ubiquitination-ISOProcess
GO:0030674protein binding, bridging-ISOFunction
GO:0031464Cul4A-RING E3 ubiquitin ligase complex-ISOComponent
GO:0031465Cul4B-RING E3 ubiquitin ligase complex-ISOComponent
GO:0032991protein-containing complex-ISOComponent
GO:0035518histone H2A monoubiquitination-ISOProcess
GO:0042752regulation of circadian rhythm26431207.IMPProcess
GO:0043066negative regulation of apoptotic process24357321.IMPProcess
GO:0043161proteasome-mediated ubiquitin-dependent protein catabolic process21873635.IBAProcess
GO:0043161proteasome-mediated ubiquitin-dependent protein catabolic process-ISOProcess
GO:0044877protein-containing complex binding-ISOFunction
GO:0045070positive regulation of viral genome replication-ISOProcess
GO:0045722positive regulation of gluconeogenesis28790135.IMPProcess
GO:0045732positive regulation of protein catabolic process-ISOProcess
GO:0046726positive regulation by virus of viral protein levels in host cell-ISOProcess
GO:0051702interaction with symbiont-ISOProcess
GO:0070914UV-damage excision repair-ISOProcess
GO:0071987WD40-repeat domain binding-ISOFunction
GO:0080008Cul4-RING E3 ubiquitin ligase complex-ISOComponent
GO:0097602cullin family protein binding-ISOFunction
GO:1901990regulation of mitotic cell cycle phase transition-ISOProcess
GO:1902188positive regulation of viral release from host cell-ISOProcess

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