EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000024785 (Gene tree)
Gene ID: 59028
Gene Symbol: Rcl1
Alias: 2310040A02Rik|RPCL1|Rnac
Full Name: RNA terminal phosphate cyclase-like 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 42469 bases
Position: chr19:29101375-29143843
Accession: 1913275
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000067579	RTC	PF01137.21	7.4e-61	1	1
ENSMUSP00000067579	RTC_insert	PF05189.13	2.4e-36	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000064393	-	1803	-	ENSMUSP00000067579	373 (aa)	-	Q9JJT0

Gene Model

Click here to download ENSMUSG00000024785's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000024785's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000024785	Rcl1	100	97.051	ENSG00000120158	RCL1	100	97.051	Homo_sapiens
ENSMUSG00000024785	Rcl1	100	78.610	ENSAPOG00000015666	rcl1	100	78.610	Acanthochromis_polyacanthus
ENSMUSG00000024785	Rcl1	100	96.783	ENSAMEG00000002631	RCL1	100	96.783	Ailuropoda_melanoleuca
ENSMUSG00000024785	Rcl1	99	79.189	ENSACIG00000021195	rcl1	99	79.189	Amphilophus_citrinellus
ENSMUSG00000024785	Rcl1	100	77.807	ENSAOCG00000002223	rcl1	100	77.807	Amphiprion_ocellaris
ENSMUSG00000024785	Rcl1	100	78.075	ENSAPEG00000006905	rcl1	100	78.075	Amphiprion_percula
ENSMUSG00000024785	Rcl1	99	75.946	ENSATEG00000020026	rcl1	99	75.946	Anabas_testudineus
ENSMUSG00000024785	Rcl1	88	86.890	ENSAPLG00000006031	RCL1	100	86.890	Anas_platyrhynchos
ENSMUSG00000024785	Rcl1	100	85.523	ENSACAG00000003640	RCL1	100	85.523	Anolis_carolinensis
ENSMUSG00000024785	Rcl1	100	96.247	ENSANAG00000037372	RCL1	100	96.247	Aotus_nancymaae
ENSMUSG00000024785	Rcl1	99	78.378	ENSACLG00000021724	rcl1	99	78.378	Astatotilapia_calliptera
ENSMUSG00000024785	Rcl1	98	78.533	ENSAMXG00000033394	rcl1	99	78.533	Astyanax_mexicanus
ENSMUSG00000024785	Rcl1	99	46.809	WBGene00022852	ZK1127.5	99	46.809	Caenorhabditis_elegans
ENSMUSG00000024785	Rcl1	100	96.783	ENSCJAG00000011202	RCL1	100	96.783	Callithrix_jacchus
ENSMUSG00000024785	Rcl1	100	95.442	ENSCAFG00000002091	RCL1	100	95.442	Canis_familiaris
ENSMUSG00000024785	Rcl1	100	95.442	ENSCAFG00020000638	RCL1	78	95.442	Canis_lupus_dingo
ENSMUSG00000024785	Rcl1	100	94.370	ENSCHIG00000012407	RCL1	100	94.370	Capra_hircus
ENSMUSG00000024785	Rcl1	88	96.330	ENSTSYG00000009592	RCL1	97	95.580	Carlito_syrichta
ENSMUSG00000024785	Rcl1	68	80.347	ENSCAPG00000013575	RCL1	100	80.347	Cavia_aperea
ENSMUSG00000024785	Rcl1	100	95.442	ENSCPOG00000015354	RCL1	100	95.442	Cavia_porcellus
ENSMUSG00000024785	Rcl1	100	96.783	ENSCCAG00000033505	RCL1	100	96.783	Cebus_capucinus
ENSMUSG00000024785	Rcl1	100	96.247	ENSCATG00000034721	RCL1	100	96.247	Cercocebus_atys
ENSMUSG00000024785	Rcl1	100	95.710	ENSCLAG00000007445	RCL1	100	95.710	Chinchilla_lanigera
ENSMUSG00000024785	Rcl1	100	96.783	ENSCSAG00000008811	RCL1	100	96.783	Chlorocebus_sabaeus
ENSMUSG00000024785	Rcl1	87	80.805	ENSCHOG00000007216	RCL1	100	80.805	Choloepus_hoffmanni
ENSMUSG00000024785	Rcl1	100	89.008	ENSCPBG00000025481	RCL1	94	89.362	Chrysemys_picta_bellii
ENSMUSG00000024785	Rcl1	98	58.649	ENSCING00000019565	-	98	58.649	Ciona_intestinalis
ENSMUSG00000024785	Rcl1	95	30.387	ENSCSAVG00000007269	-	95	30.387	Ciona_savignyi
ENSMUSG00000024785	Rcl1	100	96.783	ENSCANG00000027099	RCL1	100	96.783	Colobus_angolensis_palliatus
ENSMUSG00000024785	Rcl1	100	98.123	ENSCGRG00001013748	Rcl1	100	98.123	Cricetulus_griseus_chok1gshd
ENSMUSG00000024785	Rcl1	88	97.866	ENSCGRG00000005843	Rcl1	99	97.866	Cricetulus_griseus_crigri
ENSMUSG00000024785	Rcl1	99	78.649	ENSCSEG00000000712	rcl1	97	78.649	Cynoglossus_semilaevis
ENSMUSG00000024785	Rcl1	99	80.000	ENSCVAG00000011536	rcl1	99	80.000	Cyprinodon_variegatus
ENSMUSG00000024785	Rcl1	98	76.294	ENSDARG00000038312	rcl1	100	76.294	Danio_rerio
ENSMUSG00000024785	Rcl1	71	94.717	ENSDNOG00000019911	RCL1	100	94.717	Dasypus_novemcinctus
ENSMUSG00000024785	Rcl1	100	95.710	ENSDORG00000015645	Rcl1	100	95.710	Dipodomys_ordii
ENSMUSG00000024785	Rcl1	99	53.175	FBgn0020909	Rtc1	98	53.175	Drosophila_melanogaster
ENSMUSG00000024785	Rcl1	72	100.000	ENSETEG00000014087	-	82	100.000	Echinops_telfairi
ENSMUSG00000024785	Rcl1	100	54.133	ENSEBUG00000016621	-	100	54.133	Eptatretus_burgeri
ENSMUSG00000024785	Rcl1	100	95.710	ENSEASG00005010653	RCL1	100	95.710	Equus_asinus_asinus
ENSMUSG00000024785	Rcl1	100	95.710	ENSECAG00000015973	RCL1	100	95.710	Equus_caballus
ENSMUSG00000024785	Rcl1	100	81.501	ENSEEUG00000009801	RCL1	100	81.501	Erinaceus_europaeus
ENSMUSG00000024785	Rcl1	100	76.738	ENSELUG00000007353	rcl1	100	76.738	Esox_lucius
ENSMUSG00000024785	Rcl1	100	95.710	ENSFCAG00000014557	RCL1	100	95.710	Felis_catus
ENSMUSG00000024785	Rcl1	95	82.817	ENSFALG00000010553	RCL1	94	82.817	Ficedula_albicollis
ENSMUSG00000024785	Rcl1	88	95.413	ENSFDAG00000004209	RCL1	100	95.413	Fukomys_damarensis
ENSMUSG00000024785	Rcl1	99	80.000	ENSFHEG00000011228	rcl1	99	80.000	Fundulus_heteroclitus
ENSMUSG00000024785	Rcl1	99	77.027	ENSGMOG00000004677	rcl1	99	77.297	Gadus_morhua
ENSMUSG00000024785	Rcl1	99	85.637	ENSGALG00000015024	RCL1	99	85.637	Gallus_gallus
ENSMUSG00000024785	Rcl1	99	77.838	ENSGAFG00000007257	rcl1	99	77.838	Gambusia_affinis
ENSMUSG00000024785	Rcl1	100	77.540	ENSGACG00000017474	rcl1	100	77.540	Gasterosteus_aculeatus
ENSMUSG00000024785	Rcl1	100	89.008	ENSGAGG00000003689	RCL1	100	89.008	Gopherus_agassizii
ENSMUSG00000024785	Rcl1	100	97.051	ENSGGOG00000015041	RCL1	100	97.051	Gorilla_gorilla
ENSMUSG00000024785	Rcl1	99	78.649	ENSHBUG00000001393	rcl1	99	78.649	Haplochromis_burtoni
ENSMUSG00000024785	Rcl1	100	95.174	ENSHGLG00000016452	RCL1	100	95.174	Heterocephalus_glaber_female
ENSMUSG00000024785	Rcl1	100	79.893	ENSHGLG00000005368	-	100	79.357	Heterocephalus_glaber_female
ENSMUSG00000024785	Rcl1	100	80.697	ENSHGLG00100018010	-	100	80.161	Heterocephalus_glaber_male
ENSMUSG00000024785	Rcl1	100	88.472	ENSHGLG00100008718	-	100	88.472	Heterocephalus_glaber_male
ENSMUSG00000024785	Rcl1	99	77.838	ENSHCOG00000020170	rcl1	99	77.838	Hippocampus_comes
ENSMUSG00000024785	Rcl1	98	79.620	ENSIPUG00000018054	RCL1	99	79.620	Ictalurus_punctatus
ENSMUSG00000024785	Rcl1	100	95.710	ENSSTOG00000000023	RCL1	100	95.710	Ictidomys_tridecemlineatus
ENSMUSG00000024785	Rcl1	100	84.987	ENSJJAG00000015632	-	100	84.987	Jaculus_jaculus
ENSMUSG00000024785	Rcl1	54	72.139	ENSJJAG00000000764	-	95	72.165	Jaculus_jaculus
ENSMUSG00000024785	Rcl1	100	95.710	ENSJJAG00000022803	-	100	95.710	Jaculus_jaculus
ENSMUSG00000024785	Rcl1	98	78.474	ENSKMAG00000011946	rcl1	99	78.474	Kryptolebias_marmoratus
ENSMUSG00000024785	Rcl1	99	75.676	ENSLBEG00000003957	rcl1	99	75.676	Labrus_bergylta
ENSMUSG00000024785	Rcl1	91	80.826	ENSLACG00000004594	RCL1	98	85.174	Latimeria_chalumnae
ENSMUSG00000024785	Rcl1	100	82.842	ENSLOCG00000010148	rcl1	98	82.842	Lepisosteus_oculatus
ENSMUSG00000024785	Rcl1	100	91.689	ENSLAFG00000017495	RCL1	100	91.689	Loxodonta_africana
ENSMUSG00000024785	Rcl1	100	96.783	ENSMFAG00000037906	RCL1	100	96.783	Macaca_fascicularis
ENSMUSG00000024785	Rcl1	100	96.783	ENSMNEG00000012288	RCL1	100	96.783	Macaca_nemestrina
ENSMUSG00000024785	Rcl1	100	96.783	ENSMLEG00000043088	RCL1	100	96.783	Mandrillus_leucophaeus
ENSMUSG00000024785	Rcl1	99	79.189	ENSMAMG00000008311	rcl1	99	79.189	Mastacembelus_armatus
ENSMUSG00000024785	Rcl1	99	78.378	ENSMZEG00005017292	rcl1	99	78.378	Maylandia_zebra
ENSMUSG00000024785	Rcl1	58	84.018	ENSMGAG00000002245	RCL1	97	83.962	Meleagris_gallopavo
ENSMUSG00000024785	Rcl1	58	98.140	ENSMAUG00000008922	Rcl1	100	98.140	Mesocricetus_auratus
ENSMUSG00000024785	Rcl1	100	94.638	ENSMICG00000015562	RCL1	100	94.638	Microcebus_murinus
ENSMUSG00000024785	Rcl1	100	99.196	ENSMOCG00000012145	Rcl1	100	99.196	Microtus_ochrogaster
ENSMUSG00000024785	Rcl1	99	75.741	ENSMMOG00000021264	rcl1	99	75.741	Mola_mola
ENSMUSG00000024785	Rcl1	95	92.676	ENSMODG00000015377	RCL1	94	92.676	Monodelphis_domestica
ENSMUSG00000024785	Rcl1	99	77.838	ENSMALG00000018618	rcl1	99	77.838	Monopterus_albus
ENSMUSG00000024785	Rcl1	100	99.464	MGP_CAROLIEiJ_G0022853	Rcl1	100	99.464	Mus_caroli
ENSMUSG00000024785	Rcl1	100	98.928	MGP_PahariEiJ_G0014346	Rcl1	100	99.412	Mus_pahari
ENSMUSG00000024785	Rcl1	100	99.196	MGP_SPRETEiJ_G0023771	Rcl1	100	100.000	Mus_spretus
ENSMUSG00000024785	Rcl1	100	95.710	ENSMPUG00000004998	RCL1	100	95.710	Mustela_putorius_furo
ENSMUSG00000024785	Rcl1	100	95.442	ENSMLUG00000009654	RCL1	100	95.442	Myotis_lucifugus
ENSMUSG00000024785	Rcl1	100	97.855	ENSNGAG00000015327	Rcl1	100	97.855	Nannospalax_galili
ENSMUSG00000024785	Rcl1	90	77.745	ENSNBRG00000019854	rcl1	96	74.302	Neolamprologus_brichardi
ENSMUSG00000024785	Rcl1	100	94.102	ENSNLEG00000008891	RCL1	100	94.102	Nomascus_leucogenys
ENSMUSG00000024785	Rcl1	100	86.059	ENSMEUG00000007653	RCL1	100	86.059	Notamacropus_eugenii
ENSMUSG00000024785	Rcl1	100	96.515	ENSOPRG00000010965	RCL1	100	96.515	Ochotona_princeps
ENSMUSG00000024785	Rcl1	88	79.518	ENSODEG00000004151	RCL1	96	80.183	Octodon_degus
ENSMUSG00000024785	Rcl1	99	78.649	ENSONIG00000003871	rcl1	99	78.649	Oreochromis_niloticus
ENSMUSG00000024785	Rcl1	67	86.957	ENSOANG00000013193	-	100	86.957	Ornithorhynchus_anatinus
ENSMUSG00000024785	Rcl1	100	96.515	ENSOCUG00000008161	RCL1	100	96.515	Oryctolagus_cuniculus
ENSMUSG00000024785	Rcl1	100	76.471	ENSORLG00000010443	rcl1	100	76.471	Oryzias_latipes
ENSMUSG00000024785	Rcl1	100	76.471	ENSORLG00020012211	rcl1	100	76.471	Oryzias_latipes_hni
ENSMUSG00000024785	Rcl1	100	76.203	ENSORLG00015001122	rcl1	100	76.203	Oryzias_latipes_hsok
ENSMUSG00000024785	Rcl1	100	78.075	ENSOMEG00000022976	rcl1	88	78.075	Oryzias_melastigma
ENSMUSG00000024785	Rcl1	100	94.638	ENSOGAG00000007480	RCL1	100	94.638	Otolemur_garnettii
ENSMUSG00000024785	Rcl1	100	94.638	ENSOARG00000013463	RCL1	100	94.638	Ovis_aries
ENSMUSG00000024785	Rcl1	100	96.783	ENSPPAG00000037958	RCL1	100	96.783	Pan_paniscus
ENSMUSG00000024785	Rcl1	100	94.906	ENSPPRG00000022645	RCL1	100	94.906	Panthera_pardus
ENSMUSG00000024785	Rcl1	87	95.399	ENSPTIG00000019031	RCL1	97	95.192	Panthera_tigris_altaica
ENSMUSG00000024785	Rcl1	100	96.515	ENSPTRG00000020743	RCL1	100	96.515	Pan_troglodytes
ENSMUSG00000024785	Rcl1	100	96.783	ENSPANG00000025151	RCL1	100	96.783	Papio_anubis
ENSMUSG00000024785	Rcl1	100	77.540	ENSPKIG00000021022	rcl1	100	77.540	Paramormyrops_kingsleyae
ENSMUSG00000024785	Rcl1	88	89.634	ENSPSIG00000012302	RCL1	100	89.634	Pelodiscus_sinensis
ENSMUSG00000024785	Rcl1	100	75.936	ENSPMGG00000024007	rcl1	100	75.936	Periophthalmus_magnuspinnatus
ENSMUSG00000024785	Rcl1	100	99.196	ENSPEMG00000023275	Rcl1	100	99.196	Peromyscus_maniculatus_bairdii
ENSMUSG00000024785	Rcl1	97	30.411	ENSPMAG00000009110	rtca	96	30.411	Petromyzon_marinus
ENSMUSG00000024785	Rcl1	100	93.029	ENSPCIG00000000188	RCL1	100	93.029	Phascolarctos_cinereus
ENSMUSG00000024785	Rcl1	99	78.649	ENSPFOG00000019682	rcl1	99	78.649	Poecilia_formosa
ENSMUSG00000024785	Rcl1	99	78.649	ENSPLAG00000022354	rcl1	99	78.649	Poecilia_latipinna
ENSMUSG00000024785	Rcl1	99	78.649	ENSPMEG00000008131	rcl1	99	78.649	Poecilia_mexicana
ENSMUSG00000024785	Rcl1	99	78.378	ENSPREG00000008032	rcl1	99	78.378	Poecilia_reticulata
ENSMUSG00000024785	Rcl1	100	96.783	ENSPPYG00000019244	RCL1	100	96.783	Pongo_abelii
ENSMUSG00000024785	Rcl1	100	84.987	ENSPCAG00000001440	RCL1	100	84.987	Procavia_capensis
ENSMUSG00000024785	Rcl1	100	95.979	ENSPCOG00000009611	RCL1	100	95.979	Propithecus_coquereli
ENSMUSG00000024785	Rcl1	100	95.710	ENSPVAG00000015752	RCL1	100	95.710	Pteropus_vampyrus
ENSMUSG00000024785	Rcl1	99	78.378	ENSPNYG00000012910	rcl1	99	78.378	Pundamilia_nyererei
ENSMUSG00000024785	Rcl1	99	78.820	ENSPNAG00000028307	rcl1	92	78.820	Pygocentrus_nattereri
ENSMUSG00000024785	Rcl1	100	99.196	ENSRNOG00000015491	Rcl1	100	99.196	Rattus_norvegicus
ENSMUSG00000024785	Rcl1	100	96.515	ENSRBIG00000035818	RCL1	100	96.515	Rhinopithecus_bieti
ENSMUSG00000024785	Rcl1	100	96.783	ENSRROG00000029781	RCL1	100	96.783	Rhinopithecus_roxellana
ENSMUSG00000024785	Rcl1	98	35.946	YOL010W	-	97	35.904	Saccharomyces_cerevisiae
ENSMUSG00000024785	Rcl1	100	96.515	ENSSBOG00000026369	RCL1	100	96.515	Saimiri_boliviensis_boliviensis
ENSMUSG00000024785	Rcl1	88	91.818	ENSSHAG00000014086	RCL1	100	91.818	Sarcophilus_harrisii
ENSMUSG00000024785	Rcl1	100	78.610	ENSSFOG00015023020	rcl1	100	78.610	Scleropages_formosus
ENSMUSG00000024785	Rcl1	99	78.649	ENSSMAG00000019751	rcl1	85	78.649	Scophthalmus_maximus
ENSMUSG00000024785	Rcl1	100	77.540	ENSSDUG00000006349	rcl1	100	77.540	Seriola_dumerili
ENSMUSG00000024785	Rcl1	100	77.807	ENSSLDG00000022076	rcl1	100	77.807	Seriola_lalandi_dorsalis
ENSMUSG00000024785	Rcl1	100	94.906	ENSSARG00000009260	RCL1	100	94.906	Sorex_araneus
ENSMUSG00000024785	Rcl1	100	87.936	ENSSPUG00000016330	RCL1	100	87.936	Sphenodon_punctatus
ENSMUSG00000024785	Rcl1	100	79.679	ENSSPAG00000018038	rcl1	100	79.679	Stegastes_partitus
ENSMUSG00000024785	Rcl1	100	96.247	ENSSSCG00000005217	RCL1	83	96.247	Sus_scrofa
ENSMUSG00000024785	Rcl1	100	85.067	ENSTGUG00000005138	RCL1	100	85.067	Taeniopygia_guttata
ENSMUSG00000024785	Rcl1	99	78.108	ENSTRUG00000010493	rcl1	99	78.108	Takifugu_rubripes
ENSMUSG00000024785	Rcl1	99	77.507	ENSTNIG00000013214	rcl1	99	77.507	Tetraodon_nigroviridis
ENSMUSG00000024785	Rcl1	100	88.740	ENSTBEG00000016339	RCL1	100	88.740	Tupaia_belangeri
ENSMUSG00000024785	Rcl1	100	95.174	ENSTTRG00000016525	RCL1	100	95.174	Tursiops_truncatus
ENSMUSG00000024785	Rcl1	100	96.783	ENSUAMG00000005598	RCL1	100	96.914	Ursus_americanus
ENSMUSG00000024785	Rcl1	88	96.024	ENSUMAG00000017890	RCL1	97	96.024	Ursus_maritimus
ENSMUSG00000024785	Rcl1	88	96.636	ENSVPAG00000009188	RCL1	100	96.636	Vicugna_pacos
ENSMUSG00000024785	Rcl1	88	95.122	ENSVVUG00000007304	RCL1	89	95.122	Vulpes_vulpes
ENSMUSG00000024785	Rcl1	100	74.599	ENSXETG00000000592	rcl1	100	74.599	Xenopus_tropicalis
ENSMUSG00000024785	Rcl1	99	78.649	ENSXCOG00000004922	rcl1	99	78.649	Xiphophorus_couchianus
ENSMUSG00000024785	Rcl1	59	30.455	ENSXCOG00000008002	rtca	63	30.455	Xiphophorus_couchianus
ENSMUSG00000024785	Rcl1	99	78.649	ENSXMAG00000022366	RCL1	99	78.649	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	25190460.	IMP	Process
GO:0000480	endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	25190460.	IMP	Process
GO:0003824	catalytic activity	-	IEA	Function
GO:0003963	RNA-3'-phosphate cyclase activity	10790377.	ISA	Function
GO:0004521	endoribonuclease activity	21873635.	IBA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	10790377.	IDA	Component
GO:0006364	rRNA processing	10790377.	ISA	Process
GO:0006396	RNA processing	-	IEA	Process
GO:0042254	ribosome biogenesis	-	IEA	Process