EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000024853 (Gene tree)
Gene ID: 319322
Gene Symbol: Sf3b2
Alias: 145kDa|2610311M13Rik|2810441F20Rik|B230398H18Rik|SAP145|SF3b1|SF3b145|SF3b150
Full Name: splicing factor 3b%2C subunit 2
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 21533 bases
Position: chr19:5273923-5295455
Accession: 2441856
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000025774	DUF382	PF04037.13	2.6e-59	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000025774	-	3231	XM_006531771	ENSMUSP00000025774	878 (aa)	-	Q3UJB0

Gene Model

Click here to download ENSMUSG00000024853's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000024853's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000024853	Sf3b2	100	97.722	ENSG00000087365	SF3B2	99	99.683	Homo_sapiens
ENSMUSG00000024853	Sf3b2	95	68.561	ENSAPOG00000001974	sf3b2	80	74.033	Acanthochromis_polyacanthus
ENSMUSG00000024853	Sf3b2	100	95.778	ENSAMEG00000017206	SF3B2	100	95.778	Ailuropoda_melanoleuca
ENSMUSG00000024853	Sf3b2	97	67.314	ENSACIG00000000624	sf3b2	87	73.856	Amphilophus_citrinellus
ENSMUSG00000024853	Sf3b2	97	69.309	ENSAOCG00000009207	sf3b2	84	74.768	Amphiprion_ocellaris
ENSMUSG00000024853	Sf3b2	97	69.536	ENSAPEG00000002762	sf3b2	85	72.969	Amphiprion_percula
ENSMUSG00000024853	Sf3b2	100	65.536	ENSACAG00000008615	SF3B2	100	66.703	Anolis_carolinensis
ENSMUSG00000024853	Sf3b2	100	97.838	ENSANAG00000029120	SF3B2	100	97.838	Aotus_nancymaae
ENSMUSG00000024853	Sf3b2	86	71.742	ENSACLG00000014771	sf3b2	97	67.972	Astatotilapia_calliptera
ENSMUSG00000024853	Sf3b2	84	70.481	ENSAMXG00000007929	sf3b2	86	77.188	Astyanax_mexicanus
ENSMUSG00000024853	Sf3b2	100	95.773	ENSBTAG00000002778	SF3B2	100	95.773	Bos_taurus
ENSMUSG00000024853	Sf3b2	60	50.532	WBGene00021004	sftb-2	89	51.825	Caenorhabditis_elegans
ENSMUSG00000024853	Sf3b2	100	97.952	ENSCJAG00000001656	SF3B2	100	97.952	Callithrix_jacchus
ENSMUSG00000024853	Sf3b2	100	95.880	ENSCAFG00000013033	SF3B2	100	95.880	Canis_familiaris
ENSMUSG00000024853	Sf3b2	100	95.880	ENSCAFG00020015382	SF3B2	100	95.880	Canis_lupus_dingo
ENSMUSG00000024853	Sf3b2	100	95.880	ENSCHIG00000011211	SF3B2	100	95.880	Capra_hircus
ENSMUSG00000024853	Sf3b2	100	97.950	ENSTSYG00000000959	SF3B2	100	97.950	Carlito_syrichta
ENSMUSG00000024853	Sf3b2	61	95.789	ENSCAPG00000006065	SF3B2	93	100.000	Cavia_aperea
ENSMUSG00000024853	Sf3b2	91	96.985	ENSCPOG00000008294	SF3B2	100	96.985	Cavia_porcellus
ENSMUSG00000024853	Sf3b2	100	97.952	ENSCCAG00000035256	SF3B2	100	97.952	Cebus_capucinus
ENSMUSG00000024853	Sf3b2	100	97.836	ENSCATG00000042240	SF3B2	100	97.836	Cercocebus_atys
ENSMUSG00000024853	Sf3b2	100	98.178	ENSCLAG00000016852	SF3B2	100	98.178	Chinchilla_lanigera
ENSMUSG00000024853	Sf3b2	100	95.978	ENSCSAG00000008121	SF3B2	100	95.978	Chlorocebus_sabaeus
ENSMUSG00000024853	Sf3b2	91	99.485	ENSCHOG00000001476	SF3B2	77	91.237	Choloepus_hoffmanni
ENSMUSG00000024853	Sf3b2	85	82.552	ENSCPBG00000022465	SF3B2	87	88.245	Chrysemys_picta_bellii
ENSMUSG00000024853	Sf3b2	74	59.601	ENSCING00000005665	-	99	60.220	Ciona_intestinalis
ENSMUSG00000024853	Sf3b2	61	67.225	ENSCSAVG00000002029	-	84	66.294	Ciona_savignyi
ENSMUSG00000024853	Sf3b2	100	97.836	ENSCANG00000039680	SF3B2	100	97.836	Colobus_angolensis_palliatus
ENSMUSG00000024853	Sf3b2	100	99.431	ENSCGRG00001015741	Sf3b2	100	99.431	Cricetulus_griseus_chok1gshd
ENSMUSG00000024853	Sf3b2	100	99.431	ENSCGRG00000018110	Sf3b2	100	99.431	Cricetulus_griseus_crigri
ENSMUSG00000024853	Sf3b2	75	75.150	ENSCSEG00000000230	sf3b2	78	77.603	Cynoglossus_semilaevis
ENSMUSG00000024853	Sf3b2	97	68.525	ENSCVAG00000003357	sf3b2	85	74.801	Cyprinodon_variegatus
ENSMUSG00000024853	Sf3b2	82	73.806	ENSDARG00000018049	sf3b2	86	73.677	Danio_rerio
ENSMUSG00000024853	Sf3b2	100	94.321	ENSDNOG00000009484	SF3B2	100	94.321	Dasypus_novemcinctus
ENSMUSG00000024853	Sf3b2	100	97.838	ENSDORG00000002495	Sf3b2	100	97.838	Dipodomys_ordii
ENSMUSG00000024853	Sf3b2	84	88.889	ENSETEG00000020284	SF3B2	85	88.759	Echinops_telfairi
ENSMUSG00000024853	Sf3b2	98	57.530	ENSEBUG00000013703	sf3b2	99	59.539	Eptatretus_burgeri
ENSMUSG00000024853	Sf3b2	100	95.439	ENSEASG00005004508	SF3B2	100	95.439	Equus_asinus_asinus
ENSMUSG00000024853	Sf3b2	100	95.439	ENSECAG00000024461	SF3B2	100	95.439	Equus_caballus
ENSMUSG00000024853	Sf3b2	62	100.000	ENSEEUG00000014278	-	60	100.000	Erinaceus_europaeus
ENSMUSG00000024853	Sf3b2	97	65.288	ENSELUG00000005586	sf3b2	86	70.537	Esox_lucius
ENSMUSG00000024853	Sf3b2	100	97.843	ENSFCAG00000013289	SF3B2	100	97.843	Felis_catus
ENSMUSG00000024853	Sf3b2	80	70.804	ENSFALG00000014653	SF3B2	98	69.252	Ficedula_albicollis
ENSMUSG00000024853	Sf3b2	100	97.395	ENSFDAG00000019806	SF3B2	100	97.395	Fukomys_damarensis
ENSMUSG00000024853	Sf3b2	84	71.937	ENSFHEG00000020968	sf3b2	86	73.448	Fundulus_heteroclitus
ENSMUSG00000024853	Sf3b2	74	78.321	ENSGMOG00000012131	sf3b2	96	80.787	Gadus_morhua
ENSMUSG00000024853	Sf3b2	97	68.679	ENSGAFG00000001675	sf3b2	86	73.386	Gambusia_affinis
ENSMUSG00000024853	Sf3b2	74	79.692	ENSGACG00000019012	sf3b2	96	80.635	Gasterosteus_aculeatus
ENSMUSG00000024853	Sf3b2	100	80.926	ENSGAGG00000023916	SF3B2	86	85.542	Gopherus_agassizii
ENSMUSG00000024853	Sf3b2	100	96.716	ENSGGOG00000028448	SF3B2	100	99.717	Gorilla_gorilla
ENSMUSG00000024853	Sf3b2	86	71.871	ENSHBUG00000017349	sf3b2	97	67.972	Haplochromis_burtoni
ENSMUSG00000024853	Sf3b2	100	98.064	ENSHGLG00000010807	SF3B2	100	98.064	Heterocephalus_glaber_female
ENSMUSG00000024853	Sf3b2	100	98.064	ENSHGLG00100006361	SF3B2	100	98.064	Heterocephalus_glaber_male
ENSMUSG00000024853	Sf3b2	97	65.498	ENSHCOG00000016203	sf3b2	97	63.851	Hippocampus_comes
ENSMUSG00000024853	Sf3b2	97	65.986	ENSIPUG00000009383	sf3b2	83	71.237	Ictalurus_punctatus
ENSMUSG00000024853	Sf3b2	100	98.747	ENSSTOG00000028892	SF3B2	100	98.747	Ictidomys_tridecemlineatus
ENSMUSG00000024853	Sf3b2	100	98.411	ENSJJAG00000018193	Sf3b2	100	98.411	Jaculus_jaculus
ENSMUSG00000024853	Sf3b2	60	88.158	ENSKMAG00000020181	sf3b2	83	73.995	Kryptolebias_marmoratus
ENSMUSG00000024853	Sf3b2	97	68.571	ENSLBEG00000027739	sf3b2	88	78.425	Labrus_bergylta
ENSMUSG00000024853	Sf3b2	79	81.034	ENSLACG00000010429	SF3B2	93	74.392	Latimeria_chalumnae
ENSMUSG00000024853	Sf3b2	100	97.049	ENSLAFG00000002128	SF3B2	100	97.049	Loxodonta_africana
ENSMUSG00000024853	Sf3b2	100	97.725	ENSMFAG00000003064	SF3B2	100	97.725	Macaca_fascicularis
ENSMUSG00000024853	Sf3b2	100	93.394	ENSMMUG00000011743	SF3B2	100	93.394	Macaca_mulatta
ENSMUSG00000024853	Sf3b2	100	96.497	ENSMNEG00000034437	SF3B2	100	96.497	Macaca_nemestrina
ENSMUSG00000024853	Sf3b2	100	96.384	ENSMLEG00000029373	SF3B2	100	96.384	Mandrillus_leucophaeus
ENSMUSG00000024853	Sf3b2	84	73.067	ENSMAMG00000014103	sf3b2	86	73.462	Mastacembelus_armatus
ENSMUSG00000024853	Sf3b2	86	71.742	ENSMZEG00005020789	sf3b2	84	73.971	Maylandia_zebra
ENSMUSG00000024853	Sf3b2	64	99.024	ENSMAUG00000017040	Sf3b2	100	99.024	Mesocricetus_auratus
ENSMUSG00000024853	Sf3b2	100	92.196	ENSMICG00000016942	-	97	92.085	Microcebus_murinus
ENSMUSG00000024853	Sf3b2	100	97.608	ENSMICG00000008565	-	100	97.608	Microcebus_murinus
ENSMUSG00000024853	Sf3b2	100	99.317	ENSMOCG00000003136	Sf3b2	100	99.317	Microtus_ochrogaster
ENSMUSG00000024853	Sf3b2	97	65.840	ENSMMOG00000012928	sf3b2	86	71.373	Mola_mola
ENSMUSG00000024853	Sf3b2	85	90.861	ENSMODG00000008490	-	92	92.706	Monodelphis_domestica
ENSMUSG00000024853	Sf3b2	72	88.031	ENSMODG00000025020	-	99	87.087	Monodelphis_domestica
ENSMUSG00000024853	Sf3b2	86	70.627	ENSMALG00000015137	sf3b2	76	78.988	Monopterus_albus
ENSMUSG00000024853	Sf3b2	100	98.975	MGP_CAROLIEiJ_G0022539	Sf3b2	100	98.975	Mus_caroli
ENSMUSG00000024853	Sf3b2	100	99.317	MGP_PahariEiJ_G0014036	Sf3b2	100	99.317	Mus_pahari
ENSMUSG00000024853	Sf3b2	100	99.886	MGP_SPRETEiJ_G0023453	Sf3b2	100	99.886	Mus_spretus
ENSMUSG00000024853	Sf3b2	100	95.768	ENSMPUG00000011349	SF3B2	100	95.768	Mustela_putorius_furo
ENSMUSG00000024853	Sf3b2	100	94.438	ENSMLUG00000011136	SF3B2	100	94.438	Myotis_lucifugus
ENSMUSG00000024853	Sf3b2	100	98.519	ENSNGAG00000012103	Sf3b2	100	98.519	Nannospalax_galili
ENSMUSG00000024853	Sf3b2	100	91.770	ENSNLEG00000006007	SF3B2	100	90.909	Nomascus_leucogenys
ENSMUSG00000024853	Sf3b2	76	93.466	ENSMEUG00000000019	SF3B2	80	93.466	Notamacropus_eugenii
ENSMUSG00000024853	Sf3b2	100	94.191	ENSODEG00000017764	SF3B2	100	94.191	Octodon_degus
ENSMUSG00000024853	Sf3b2	97	67.007	ENSONIG00000013068	sf3b2	87	75.758	Oreochromis_niloticus
ENSMUSG00000024853	Sf3b2	87	81.362	ENSOANG00000012482	SF3B2	97	81.060	Ornithorhynchus_anatinus
ENSMUSG00000024853	Sf3b2	62	64.510	ENSOCUG00000024154	-	100	64.695	Oryctolagus_cuniculus
ENSMUSG00000024853	Sf3b2	100	90.838	ENSOCUG00000015722	-	100	90.726	Oryctolagus_cuniculus
ENSMUSG00000024853	Sf3b2	97	66.176	ENSORLG00000008235	sf3b2	85	73.421	Oryzias_latipes
ENSMUSG00000024853	Sf3b2	97	66.176	ENSORLG00020005357	sf3b2	88	73.421	Oryzias_latipes_hni
ENSMUSG00000024853	Sf3b2	97	66.290	ENSORLG00015022454	sf3b2	82	78.165	Oryzias_latipes_hsok
ENSMUSG00000024853	Sf3b2	97	65.000	ENSOMEG00000017480	sf3b2	84	73.619	Oryzias_melastigma
ENSMUSG00000024853	Sf3b2	100	89.609	ENSOGAG00000005799	SF3B2	100	90.168	Otolemur_garnettii
ENSMUSG00000024853	Sf3b2	100	93.878	ENSOARG00000002125	SF3B2	100	95.393	Ovis_aries
ENSMUSG00000024853	Sf3b2	100	95.866	ENSPPAG00000007359	SF3B2	100	95.866	Pan_paniscus
ENSMUSG00000024853	Sf3b2	100	97.843	ENSPPRG00000013334	SF3B2	100	97.843	Panthera_pardus
ENSMUSG00000024853	Sf3b2	100	97.730	ENSPTIG00000015022	SF3B2	100	97.730	Panthera_tigris_altaica
ENSMUSG00000024853	Sf3b2	100	95.866	ENSPTRG00000003912	SF3B2	100	95.866	Pan_troglodytes
ENSMUSG00000024853	Sf3b2	100	97.836	ENSPANG00000008593	SF3B2	100	97.836	Papio_anubis
ENSMUSG00000024853	Sf3b2	97	66.517	ENSPKIG00000016576	sf3b2	86	80.222	Paramormyrops_kingsleyae
ENSMUSG00000024853	Sf3b2	93	82.388	ENSPSIG00000003158	SF3B2	100	88.006	Pelodiscus_sinensis
ENSMUSG00000024853	Sf3b2	84	67.104	ENSPMGG00000000819	sf3b2	84	66.934	Periophthalmus_magnuspinnatus
ENSMUSG00000024853	Sf3b2	93	84.540	ENSPEMG00000015451	-	100	84.540	Peromyscus_maniculatus_bairdii
ENSMUSG00000024853	Sf3b2	100	99.431	ENSPEMG00000015437	Sf3b2	100	99.431	Peromyscus_maniculatus_bairdii
ENSMUSG00000024853	Sf3b2	85	90.451	ENSPCIG00000008381	SF3B2	100	89.778	Phascolarctos_cinereus
ENSMUSG00000024853	Sf3b2	97	68.950	ENSPFOG00000002552	sf3b2	86	74.605	Poecilia_formosa
ENSMUSG00000024853	Sf3b2	97	69.064	ENSPLAG00000001471	sf3b2	86	74.737	Poecilia_latipinna
ENSMUSG00000024853	Sf3b2	97	67.694	ENSPMEG00000013180	sf3b2	86	74.572	Poecilia_mexicana
ENSMUSG00000024853	Sf3b2	84	72.259	ENSPREG00000002665	sf3b2	86	74.244	Poecilia_reticulata
ENSMUSG00000024853	Sf3b2	74	92.996	ENSPPYG00000003034	-	99	92.996	Pongo_abelii
ENSMUSG00000024853	Sf3b2	100	94.878	ENSPCAG00000005129	SF3B2	100	94.878	Procavia_capensis
ENSMUSG00000024853	Sf3b2	100	97.608	ENSPCOG00000025375	SF3B2	100	97.608	Propithecus_coquereli
ENSMUSG00000024853	Sf3b2	54	99.561	ENSPVAG00000005466	-	80	99.561	Pteropus_vampyrus
ENSMUSG00000024853	Sf3b2	56	99.299	ENSPVAG00000016975	-	55	99.299	Pteropus_vampyrus
ENSMUSG00000024853	Sf3b2	81	73.407	ENSPNYG00000023594	sf3b2	92	74.038	Pundamilia_nyererei
ENSMUSG00000024853	Sf3b2	97	66.892	ENSPNAG00000001891	sf3b2	81	73.978	Pygocentrus_nattereri
ENSMUSG00000024853	Sf3b2	100	99.089	ENSRNOG00000020412	Sf3b2	100	99.089	Rattus_norvegicus
ENSMUSG00000024853	Sf3b2	100	97.722	ENSRBIG00000034065	SF3B2	100	97.722	Rhinopithecus_bieti
ENSMUSG00000024853	Sf3b2	100	97.722	ENSRROG00000034496	SF3B2	100	97.722	Rhinopithecus_roxellana
ENSMUSG00000024853	Sf3b2	100	93.355	ENSSBOG00000026337	SF3B2	100	93.577	Saimiri_boliviensis_boliviensis
ENSMUSG00000024853	Sf3b2	96	69.338	ENSSHAG00000018043	-	100	70.116	Sarcophilus_harrisii
ENSMUSG00000024853	Sf3b2	85	85.640	ENSSHAG00000010933	-	84	86.423	Sarcophilus_harrisii
ENSMUSG00000024853	Sf3b2	97	66.519	ENSSFOG00015021125	sf3b2	97	67.458	Scleropages_formosus
ENSMUSG00000024853	Sf3b2	60	87.666	ENSSMAG00000004079	sf3b2	88	72.903	Scophthalmus_maximus
ENSMUSG00000024853	Sf3b2	60	88.425	ENSSDUG00000008499	sf3b2	85	70.801	Seriola_dumerili
ENSMUSG00000024853	Sf3b2	60	88.425	ENSSLDG00000006838	sf3b2	86	75.033	Seriola_lalandi_dorsalis
ENSMUSG00000024853	Sf3b2	52	99.206	ENSSARG00000003707	-	53	99.206	Sorex_araneus
ENSMUSG00000024853	Sf3b2	100	81.377	ENSSPUG00000009198	SF3B2	85	84.070	Sphenodon_punctatus
ENSMUSG00000024853	Sf3b2	97	66.741	ENSSPAG00000004406	sf3b2	86	73.325	Stegastes_partitus
ENSMUSG00000024853	Sf3b2	100	95.212	ENSSSCG00000012957	SF3B2	100	95.212	Sus_scrofa
ENSMUSG00000024853	Sf3b2	97	54.452	ENSTRUG00000007611	sf3b2	88	71.763	Takifugu_rubripes
ENSMUSG00000024853	Sf3b2	86	70.157	ENSTNIG00000007441	sf3b2	88	68.809	Tetraodon_nigroviridis
ENSMUSG00000024853	Sf3b2	91	95.349	ENSTBEG00000004258	SF3B2	82	99.286	Tupaia_belangeri
ENSMUSG00000024853	Sf3b2	100	95.546	ENSTTRG00000014339	SF3B2	100	95.546	Tursiops_truncatus
ENSMUSG00000024853	Sf3b2	100	93.993	ENSUAMG00000020754	SF3B2	99	95.116	Ursus_americanus
ENSMUSG00000024853	Sf3b2	100	95.991	ENSUMAG00000010994	SF3B2	100	95.991	Ursus_maritimus
ENSMUSG00000024853	Sf3b2	67	99.153	ENSVPAG00000008695	SF3B2	63	99.153	Vicugna_pacos
ENSMUSG00000024853	Sf3b2	100	95.768	ENSVVUG00000027029	SF3B2	100	95.768	Vulpes_vulpes
ENSMUSG00000024853	Sf3b2	87	71.778	ENSXETG00000008422	sf3b2	87	78.248	Xenopus_tropicalis
ENSMUSG00000024853	Sf3b2	72	78.413	ENSXCOG00000008943	sf3b2	84	78.254	Xiphophorus_couchianus
ENSMUSG00000024853	Sf3b2	60	87.736	ENSXMAG00000008467	sf3b2	86	72.477	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0005515	protein binding	14651998.	IPI	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005681	spliceosomal complex	-	ISO	Component
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	-	ISO	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0071005	U2-type precatalytic spliceosome	-	ISO	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component