EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000024949 (Gene tree)
Gene ID: 22668
Gene Symbol: Sf1
Alias: CW17R|MZFM|WBP4|Zfp162
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 14341 bases
Position: chr19:6363690-6378030
Accession: 1095403
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000114438	KH_1	PF00013.29	1.2e-07	1	1
ENSMUSP00000109115	KH_1	PF00013.29	5.1e-07	1	1
ENSMUSP00000109117	KH_1	PF00013.29	5.4e-07	1	1
ENSMUSP00000121309	KH_1	PF00013.29	6.1e-07	1	1
ENSMUSP00000109116	KH_1	PF00013.29	6.1e-07	1	1
ENSMUSP00000114438	zf-CCHC	PF00098.23	0.00017	1	1
ENSMUSP00000109117	zf-CCHC	PF00098.23	0.00032	1	1
ENSMUSP00000109115	zf-CCHC	PF00098.23	0.00034	1	1
ENSMUSP00000109116	zf-CCHC	PF00098.23	0.00042	1	1
ENSMUSP00000121309	zf-CCHC	PF00098.23	0.00042	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000154260	-	455	-	-	- (aa)	-	-
ENSMUST00000124667	-	755	-	ENSMUSP00000114788	200 (aa)	-	F6Z9W2
ENSMUST00000125516	-	905	-	ENSMUSP00000117172	225 (aa)	-	F6YR19
ENSMUST00000131252	-	4353	XM_006531733	ENSMUSP00000121309	639 (aa)	XP_006531796	Q64213
ENSMUST00000144409	-	718	-	ENSMUSP00000123175	84 (aa)	-	D6RDB7
ENSMUST00000155973	-	1000	-	ENSMUSP00000114438	267 (aa)	-	D3YVH4
ENSMUST00000131083	-	489	-	-	- (aa)	-	-
ENSMUST00000113488	-	2282	XM_006531740	ENSMUSP00000109116	638 (aa)	XP_006531803	D3YZD0
ENSMUST00000113489	-	2863	XM_006531737	ENSMUSP00000109117	571 (aa)	XP_006531800	D3YZC9
ENSMUST00000144239	-	785	-	-	- (aa)	-	-
ENSMUST00000146298	-	869	-	-	- (aa)	-	-
ENSMUST00000162237	-	513	-	ENSMUSP00000124590	171 (aa)	-	F6SRV1
ENSMUST00000113485	-	3221	-	ENSMUSP00000109113	110 (aa)	-	F8WHF9
ENSMUST00000113487	-	2649	-	ENSMUSP00000109115	548 (aa)	-	E9Q4Q2
ENSMUST00000131677	-	408	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000024949's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000024949's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000024949	Sf1	56	33.125	ENSMUSG00000022332	Khdrbs3	97	35.938

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000024949	Sf1	99	94.737	ENSAPOG00000012341	sf1	60	76.047	Acanthochromis_polyacanthus
ENSMUSG00000024949	Sf1	100	99.625	ENSAMEG00000017828	SF1	100	91.602	Ailuropoda_melanoleuca
ENSMUSG00000024949	Sf1	99	93.609	ENSACIG00000016514	sf1	62	78.282	Amphilophus_citrinellus
ENSMUSG00000024949	Sf1	99	94.737	ENSAOCG00000010934	sf1	61	76.047	Amphiprion_ocellaris
ENSMUSG00000024949	Sf1	99	94.737	ENSAPEG00000009498	sf1	61	76.047	Amphiprion_percula
ENSMUSG00000024949	Sf1	99	95.113	ENSATEG00000001894	sf1	60	77.488	Anabas_testudineus
ENSMUSG00000024949	Sf1	100	99.625	ENSANAG00000026664	-	100	99.218	Aotus_nancymaae
ENSMUSG00000024949	Sf1	100	86.517	ENSANAG00000022607	-	99	86.899	Aotus_nancymaae
ENSMUSG00000024949	Sf1	99	95.489	ENSACLG00000007633	sf1	61	78.177	Astatotilapia_calliptera
ENSMUSG00000024949	Sf1	99	96.617	ENSAMXG00000003630	sf1	50	79.462	Astyanax_mexicanus
ENSMUSG00000024949	Sf1	100	99.625	ENSBTAG00000001035	SF1	100	99.374	Bos_taurus
ENSMUSG00000024949	Sf1	100	99.625	ENSCJAG00000002780	SF1	100	99.374	Callithrix_jacchus
ENSMUSG00000024949	Sf1	100	99.625	ENSCAFG00000014239	SF1	100	99.216	Canis_familiaris
ENSMUSG00000024949	Sf1	100	99.625	ENSCAFG00020014381	SF1	100	99.374	Canis_lupus_dingo
ENSMUSG00000024949	Sf1	100	99.625	ENSCHIG00000025867	SF1	100	99.453	Capra_hircus
ENSMUSG00000024949	Sf1	99	99.240	ENSTSYG00000033618	SF1	88	100.000	Carlito_syrichta
ENSMUSG00000024949	Sf1	100	99.625	ENSCAPG00000010762	SF1	100	97.500	Cavia_aperea
ENSMUSG00000024949	Sf1	100	99.625	ENSCPOG00000012290	SF1	100	99.069	Cavia_porcellus
ENSMUSG00000024949	Sf1	100	99.625	ENSCCAG00000037881	SF1	100	99.216	Cebus_capucinus
ENSMUSG00000024949	Sf1	100	88.390	ENSCCAG00000023781	-	90	87.229	Cebus_capucinus
ENSMUSG00000024949	Sf1	100	99.625	ENSCATG00000011564	SF1	100	99.374	Cercocebus_atys
ENSMUSG00000024949	Sf1	100	99.625	ENSCSAG00000007258	SF1	100	99.453	Chlorocebus_sabaeus
ENSMUSG00000024949	Sf1	99	89.773	ENSCHOG00000006008	SF1	79	93.062	Choloepus_hoffmanni
ENSMUSG00000024949	Sf1	100	99.251	ENSCPBG00000023763	SF1	66	85.106	Chrysemys_picta_bellii
ENSMUSG00000024949	Sf1	99	71.591	ENSCING00000005564	-	72	61.667	Ciona_intestinalis
ENSMUSG00000024949	Sf1	99	72.727	ENSCSAVG00000009055	-	87	56.438	Ciona_savignyi
ENSMUSG00000024949	Sf1	100	99.625	ENSCANG00000042201	SF1	100	99.374	Colobus_angolensis_palliatus
ENSMUSG00000024949	Sf1	100	100.000	ENSCGRG00001003677	Sf1	100	99.844	Cricetulus_griseus_chok1gshd
ENSMUSG00000024949	Sf1	100	100.000	ENSCGRG00000001708	Sf1	100	99.464	Cricetulus_griseus_crigri
ENSMUSG00000024949	Sf1	99	93.609	ENSCSEG00000014375	sf1	57	76.077	Cynoglossus_semilaevis
ENSMUSG00000024949	Sf1	99	95.113	ENSCVAG00000001670	sf1	63	78.729	Cyprinodon_variegatus
ENSMUSG00000024949	Sf1	99	95.489	ENSDARG00000008188	sf1	72	79.021	Danio_rerio
ENSMUSG00000024949	Sf1	100	99.625	ENSDNOG00000001282	SF1	100	98.905	Dasypus_novemcinctus
ENSMUSG00000024949	Sf1	100	99.625	ENSDORG00000016334	Sf1	100	99.374	Dipodomys_ordii
ENSMUSG00000024949	Sf1	100	98.502	ENSETEG00000012830	SF1	82	90.769	Echinops_telfairi
ENSMUSG00000024949	Sf1	100	99.251	ENSEASG00005018272	SF1	100	99.088	Equus_asinus_asinus
ENSMUSG00000024949	Sf1	100	99.625	ENSECAG00000024544	SF1	100	99.270	Equus_caballus
ENSMUSG00000024949	Sf1	90	99.582	ENSEEUG00000001058	SF1	100	98.473	Erinaceus_europaeus
ENSMUSG00000024949	Sf1	99	93.985	ENSELUG00000013225	sf1	54	79.426	Esox_lucius
ENSMUSG00000024949	Sf1	100	99.625	ENSFCAG00000012231	SF1	100	99.216	Felis_catus
ENSMUSG00000024949	Sf1	50	99.254	ENSFALG00000002749	-	100	98.540	Ficedula_albicollis
ENSMUSG00000024949	Sf1	100	99.625	ENSFDAG00000009833	SF1	100	97.679	Fukomys_damarensis
ENSMUSG00000024949	Sf1	99	94.737	ENSFHEG00000022656	sf1	61	76.334	Fundulus_heteroclitus
ENSMUSG00000024949	Sf1	99	92.481	ENSGMOG00000007469	sf1	74	74.541	Gadus_morhua
ENSMUSG00000024949	Sf1	99	95.489	ENSGAFG00000019284	sf1	78	80.476	Gambusia_affinis
ENSMUSG00000024949	Sf1	99	94.361	ENSGACG00000000826	sf1	68	77.014	Gasterosteus_aculeatus
ENSMUSG00000024949	Sf1	100	99.251	ENSGAGG00000021691	SF1	72	85.714	Gopherus_agassizii
ENSMUSG00000024949	Sf1	99	95.489	ENSHBUG00000011598	sf1	61	75.973	Haplochromis_burtoni
ENSMUSG00000024949	Sf1	100	99.625	ENSHGLG00000009541	SF1	100	99.060	Heterocephalus_glaber_female
ENSMUSG00000024949	Sf1	96	91.406	ENSHGLG00100008255	-	94	85.924	Heterocephalus_glaber_male
ENSMUSG00000024949	Sf1	97	92.248	ENSHGLG00100008076	-	87	86.806	Heterocephalus_glaber_male
ENSMUSG00000024949	Sf1	100	99.625	ENSHGLG00100013879	-	100	97.679	Heterocephalus_glaber_male
ENSMUSG00000024949	Sf1	99	94.361	ENSHCOG00000011388	sf1	58	76.998	Hippocampus_comes
ENSMUSG00000024949	Sf1	100	85.393	ENSSTOG00000024353	-	98	82.740	Ictidomys_tridecemlineatus
ENSMUSG00000024949	Sf1	100	99.625	ENSSTOG00000009790	-	100	99.363	Ictidomys_tridecemlineatus
ENSMUSG00000024949	Sf1	100	99.625	ENSJJAG00000011788	Sf1	100	99.531	Jaculus_jaculus
ENSMUSG00000024949	Sf1	99	94.737	ENSKMAG00000005854	sf1	63	77.518	Kryptolebias_marmoratus
ENSMUSG00000024949	Sf1	99	94.737	ENSLBEG00000019836	sf1	64	78.469	Labrus_bergylta
ENSMUSG00000024949	Sf1	100	89.139	ENSLACG00000018493	SF1	87	69.742	Latimeria_chalumnae
ENSMUSG00000024949	Sf1	99	96.241	ENSLOCG00000002130	sf1	59	80.296	Lepisosteus_oculatus
ENSMUSG00000024949	Sf1	100	99.251	ENSLAFG00000007201	SF1	100	94.884	Loxodonta_africana
ENSMUSG00000024949	Sf1	100	99.625	ENSMFAG00000033122	SF1	100	99.374	Macaca_fascicularis
ENSMUSG00000024949	Sf1	100	99.625	ENSMMUG00000022606	SF1	100	99.453	Macaca_mulatta
ENSMUSG00000024949	Sf1	100	99.625	ENSMNEG00000037901	SF1	100	99.374	Macaca_nemestrina
ENSMUSG00000024949	Sf1	100	99.625	ENSMLEG00000040706	SF1	95	99.364	Mandrillus_leucophaeus
ENSMUSG00000024949	Sf1	99	95.113	ENSMAMG00000001780	sf1	58	78.208	Mastacembelus_armatus
ENSMUSG00000024949	Sf1	99	95.489	ENSMZEG00005009196	sf1	61	75.744	Maylandia_zebra
ENSMUSG00000024949	Sf1	100	100.000	ENSMAUG00000014064	Sf1	100	99.687	Mesocricetus_auratus
ENSMUSG00000024949	Sf1	100	99.625	ENSMICG00000001202	SF1	100	99.218	Microcebus_murinus
ENSMUSG00000024949	Sf1	100	100.000	ENSMOCG00000022038	Sf1	100	99.687	Microtus_ochrogaster
ENSMUSG00000024949	Sf1	99	92.481	ENSMMOG00000020474	sf1	60	77.053	Mola_mola
ENSMUSG00000024949	Sf1	100	99.625	ENSMODG00000029407	SF1	97	94.183	Monodelphis_domestica
ENSMUSG00000024949	Sf1	99	93.233	ENSMALG00000020521	sf1	68	76.596	Monopterus_albus
ENSMUSG00000024949	Sf1	100	100.000	MGP_CAROLIEiJ_G0022607	Sf1	100	100.000	Mus_caroli
ENSMUSG00000024949	Sf1	100	100.000	MGP_PahariEiJ_G0014101	Sf1	100	100.000	Mus_pahari
ENSMUSG00000024949	Sf1	100	100.000	MGP_SPRETEiJ_G0023518	Sf1	100	100.000	Mus_spretus
ENSMUSG00000024949	Sf1	100	99.625	ENSMPUG00000012684	SF1	100	98.122	Mustela_putorius_furo
ENSMUSG00000024949	Sf1	100	99.625	ENSMLUG00000015217	-	99	99.049	Myotis_lucifugus
ENSMUSG00000024949	Sf1	100	95.131	ENSMLUG00000029800	-	78	94.273	Myotis_lucifugus
ENSMUSG00000024949	Sf1	100	99.625	ENSNGAG00000005550	Sf1	100	99.216	Nannospalax_galili
ENSMUSG00000024949	Sf1	99	95.489	ENSNBRG00000017606	sf1	60	79.805	Neolamprologus_brichardi
ENSMUSG00000024949	Sf1	100	99.625	ENSNLEG00000005236	-	100	99.218	Nomascus_leucogenys
ENSMUSG00000024949	Sf1	100	99.625	ENSMEUG00000013424	SF1	100	98.305	Notamacropus_eugenii
ENSMUSG00000024949	Sf1	90	99.582	ENSOPRG00000005008	SF1	100	98.788	Ochotona_princeps
ENSMUSG00000024949	Sf1	100	95.506	ENSODEG00000006102	-	100	87.057	Octodon_degus
ENSMUSG00000024949	Sf1	99	95.489	ENSONIG00000015728	sf1	61	75.515	Oreochromis_niloticus
ENSMUSG00000024949	Sf1	81	99.535	ENSOANG00000002909	SF1	96	87.212	Ornithorhynchus_anatinus
ENSMUSG00000024949	Sf1	100	99.625	ENSOCUG00000026486	SF1	100	99.048	Oryctolagus_cuniculus
ENSMUSG00000024949	Sf1	99	94.737	ENSORLG00000011853	sf1	58	77.458	Oryzias_latipes
ENSMUSG00000024949	Sf1	99	94.737	ENSORLG00020011834	sf1	60	76.291	Oryzias_latipes_hni
ENSMUSG00000024949	Sf1	99	94.737	ENSORLG00015012855	sf1	59	76.978	Oryzias_latipes_hsok
ENSMUSG00000024949	Sf1	99	94.737	ENSOMEG00000005210	sf1	61	75.587	Oryzias_melastigma
ENSMUSG00000024949	Sf1	100	99.625	ENSOGAG00000016196	SF1	100	99.060	Otolemur_garnettii
ENSMUSG00000024949	Sf1	100	99.625	ENSOARG00000009166	SF1	97	94.756	Ovis_aries
ENSMUSG00000024949	Sf1	100	99.625	ENSPPAG00000002799	-	100	99.347	Pan_paniscus
ENSMUSG00000024949	Sf1	100	99.625	ENSPPRG00000013566	SF1	100	99.347	Panthera_pardus
ENSMUSG00000024949	Sf1	100	99.625	ENSPTIG00000016141	SF1	99	88.482	Panthera_tigris_altaica
ENSMUSG00000024949	Sf1	100	99.625	ENSPTRG00000003846	SF1	100	99.216	Pan_troglodytes
ENSMUSG00000024949	Sf1	100	99.625	ENSPANG00000020754	SF1	100	99.453	Papio_anubis
ENSMUSG00000024949	Sf1	80	92.958	ENSPKIG00000012116	sf1	88	74.499	Paramormyrops_kingsleyae
ENSMUSG00000024949	Sf1	67	99.438	ENSPSIG00000003610	SF1	97	76.078	Pelodiscus_sinensis
ENSMUSG00000024949	Sf1	100	100.000	ENSPEMG00000010463	Sf1	100	99.843	Peromyscus_maniculatus_bairdii
ENSMUSG00000024949	Sf1	100	77.612	ENSPMAG00000008272	sf1	53	67.209	Petromyzon_marinus
ENSMUSG00000024949	Sf1	100	99.625	ENSPCIG00000018173	SF1	100	98.592	Phascolarctos_cinereus
ENSMUSG00000024949	Sf1	99	95.489	ENSPFOG00000013683	sf1	68	81.384	Poecilia_formosa
ENSMUSG00000024949	Sf1	99	95.489	ENSPLAG00000018076	sf1	61	79.426	Poecilia_latipinna
ENSMUSG00000024949	Sf1	99	95.489	ENSPMEG00000005726	sf1	62	79.665	Poecilia_mexicana
ENSMUSG00000024949	Sf1	99	95.489	ENSPREG00000004155	sf1	59	78.947	Poecilia_reticulata
ENSMUSG00000024949	Sf1	100	99.625	ENSPPYG00000003098	-	100	99.060	Pongo_abelii
ENSMUSG00000024949	Sf1	100	99.251	ENSPCAG00000013631	SF1	80	98.699	Procavia_capensis
ENSMUSG00000024949	Sf1	100	99.625	ENSPCOG00000027546	SF1	100	99.218	Propithecus_coquereli
ENSMUSG00000024949	Sf1	100	99.625	ENSPVAG00000016938	SF1	81	98.885	Pteropus_vampyrus
ENSMUSG00000024949	Sf1	99	95.489	ENSPNYG00000004673	sf1	59	78.436	Pundamilia_nyererei
ENSMUSG00000024949	Sf1	99	95.865	ENSPNAG00000013072	sf1	59	79.805	Pygocentrus_nattereri
ENSMUSG00000024949	Sf1	100	100.000	ENSRNOG00000021085	Sf1	100	100.000	Rattus_norvegicus
ENSMUSG00000024949	Sf1	100	99.625	ENSRBIG00000042818	SF1	100	95.305	Rhinopithecus_bieti
ENSMUSG00000024949	Sf1	100	99.625	ENSRROG00000045655	SF1	100	99.425	Rhinopithecus_roxellana
ENSMUSG00000024949	Sf1	97	45.788	YLR116W	MSL5	61	43.182	Saccharomyces_cerevisiae
ENSMUSG00000024949	Sf1	95	88.933	ENSSBOG00000022267	-	99	81.010	Saimiri_boliviensis_boliviensis
ENSMUSG00000024949	Sf1	100	99.625	ENSSHAG00000006841	SF1	75	92.927	Sarcophilus_harrisii
ENSMUSG00000024949	Sf1	99	93.985	ENSSFOG00015021978	sf1	55	77.295	Scleropages_formosus
ENSMUSG00000024949	Sf1	99	93.985	ENSSMAG00000007549	sf1	63	76.761	Scophthalmus_maximus
ENSMUSG00000024949	Sf1	99	95.113	ENSSDUG00000003903	sf1	63	76.636	Seriola_dumerili
ENSMUSG00000024949	Sf1	99	95.113	ENSSLDG00000013075	sf1	61	76.636	Seriola_lalandi_dorsalis
ENSMUSG00000024949	Sf1	100	92.884	ENSSARG00000008180	SF1	100	95.164	Sorex_araneus
ENSMUSG00000024949	Sf1	100	98.502	ENSSPUG00000012907	SF1	86	81.190	Sphenodon_punctatus
ENSMUSG00000024949	Sf1	99	95.113	ENSSPAG00000019060	sf1	61	74.828	Stegastes_partitus
ENSMUSG00000024949	Sf1	100	99.625	ENSSSCG00000013021	SF1	100	99.270	Sus_scrofa
ENSMUSG00000024949	Sf1	50	99.254	ENSTGUG00000016087	-	100	98.540	Taeniopygia_guttata
ENSMUSG00000024949	Sf1	99	79.851	ENSTNIG00000004820	sf1	80	70.023	Tetraodon_nigroviridis
ENSMUSG00000024949	Sf1	100	99.625	ENSTBEG00000013133	SF1	79	98.876	Tupaia_belangeri
ENSMUSG00000024949	Sf1	98	95.717	ENSTTRG00000008857	SF1	100	95.717	Tursiops_truncatus
ENSMUSG00000024949	Sf1	82	96.756	ENSUAMG00000011977	SF1	100	96.756	Ursus_americanus
ENSMUSG00000024949	Sf1	100	99.625	ENSUMAG00000007268	SF1	89	100.000	Ursus_maritimus
ENSMUSG00000024949	Sf1	87	99.571	ENSVPAG00000011912	SF1	66	99.598	Vicugna_pacos
ENSMUSG00000024949	Sf1	100	99.625	ENSVVUG00000028585	SF1	100	99.453	Vulpes_vulpes
ENSMUSG00000024949	Sf1	99	98.120	ENSXETG00000008434	sf1	68	81.311	Xenopus_tropicalis
ENSMUSG00000024949	Sf1	99	95.489	ENSXCOG00000003704	sf1	75	81.188	Xiphophorus_couchianus
ENSMUSG00000024949	Sf1	99	95.489	ENSXMAG00000007822	sf1	61	79.665	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	25145264.	IPI	Function
GO:0005634	nucleus	18559850.	ISS	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005737	cytoplasm	18559850.	ISS	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0008380	RNA splicing	-	IEA	Process
GO:0016604	nuclear body	25145264.	IDA	Component
GO:0030238	male sex determination	17495005.	IGI	Process
GO:0030575	nuclear body organization	25145264.	IMP	Process
GO:0033327	Leydig cell differentiation	17495005.	IGI	Process
GO:0045131	pre-mRNA branch point binding	-	IEA	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0048662	negative regulation of smooth muscle cell proliferation	-	ISO	Process
GO:0050810	regulation of steroid biosynthetic process	17495005.	IGI	Process