EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000024974 (Gene tree)
Gene ID: 13006
Gene Symbol: Smc3
Alias: Bamacan|Cspg6|Mmip1|SmcD
Full Name: structural maintenance of chromosomes 3
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 45436
Position: chr19: 53600398-53645833
Accession: 1339795
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000157053	-	471	-	-	- (aa)	-	-
ENSMUST00000025930	-	4851	-	ENSMUSP00000025930	1217 (aa)	-	Q9CW03
ENSMUST00000171083	-	695	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000024974's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04110	Cell cycle	KEGG
mmu04114	Oocyte meiosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000024974's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000024974	Smc3	100	99.918	ENSG00000108055	SMC3	100	99.918	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000775	chromosome, centromeric region	-	IEA	Component
GO:0000785	chromatin	-	ISO	Component
GO:0000800	lateral element	15870106.22711701.	IDA	Component
GO:0003682	chromatin binding	20720539.22415368.	IDA	Function
GO:0005515	protein binding	10375619.12759374.20159591.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005604	basement membrane	-	ISO	Component
GO:0005634	nucleus	10375619.12759374.	IDA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005694	chromosome	-	IEA	Component
GO:0006275	regulation of DNA replication	-	ISO	Process
GO:0006281	DNA repair	-	IEA	Process
GO:0006974	cellular response to DNA damage stimulus	-	IEA	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0007062	sister chromatid cohesion	-	ISO	Process
GO:0008278	cohesin complex	10375619.	IDA	Component
GO:0008278	cohesin complex	-	ISO	Component
GO:0016363	nuclear matrix	-	ISO	Component
GO:0019827	stem cell population maintenance	20720539.	IMP	Process
GO:0030893	meiotic cohesin complex	21527826.	IDA	Component
GO:0030893	meiotic cohesin complex	-	ISO	Component
GO:0032876	negative regulation of DNA endoreduplication	-	ISO	Process
GO:0034991	nuclear meiotic cohesin complex	21743440.22164254.	IDA	Component
GO:0036033	mediator complex binding	20720539.	IDA	Function
GO:0044791	positive regulation by host of viral release from host cell	-	ISO	Process
GO:0046982	protein heterodimerization activity	-	ISO	Function
GO:0048487	beta-tubulin binding	-	ISO	Function
GO:0051276	chromosome organization	-	IEA	Process
GO:0051301	cell division	-	IEA	Process
GO:0051321	meiotic cell cycle	12759374.	IPI	Process
GO:0051321	meiotic cell cycle	-	ISO	Process
GO:0051702	interaction with symbiont	-	ISO	Process
GO:0070840	dynein complex binding	-	ISO	Function
GO:0097431	mitotic spindle pole	-	ISO	Component
GO:1901673	regulation of mitotic spindle assembly	-	ISO	Process