EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000025024 (Gene tree)
Gene ID: 76479
Gene Symbol: Smndc1
Alias: 2410004J23Rik|4933440I19Rik
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 11360 bases
Position: chr19:53379214-53390573
Accession: 1923729
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000025997	SMN	PF06003.12	4.5e-15	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000025997	-	2125	XM_006527440	ENSMUSP00000025997	238 (aa)	XP_006527503	Q8BGT7

Gene Model

Click here to download ENSMUSG00000025024's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000025024's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000025024	Smndc1	100	99.580	ENSG00000119953	SMNDC1	100	99.580	Homo_sapiens
ENSMUSG00000025024	Smndc1	100	75.210	ENSAPOG00000021772	smndc1	100	75.210	Acanthochromis_polyacanthus
ENSMUSG00000025024	Smndc1	100	99.160	ENSAMEG00000005251	SMNDC1	100	99.160	Ailuropoda_melanoleuca
ENSMUSG00000025024	Smndc1	100	76.987	ENSACIG00000004819	smndc1	100	76.987	Amphilophus_citrinellus
ENSMUSG00000025024	Smndc1	100	75.210	ENSAOCG00000017869	smndc1	100	75.210	Amphiprion_ocellaris
ENSMUSG00000025024	Smndc1	100	75.210	ENSAPEG00000007752	smndc1	100	75.210	Amphiprion_percula
ENSMUSG00000025024	Smndc1	100	76.050	ENSATEG00000006830	smndc1	100	76.050	Anabas_testudineus
ENSMUSG00000025024	Smndc1	83	95.455	ENSAPLG00000004322	SMNDC1	100	95.455	Anas_platyrhynchos
ENSMUSG00000025024	Smndc1	100	94.538	ENSACAG00000005983	SMNDC1	100	94.538	Anolis_carolinensis
ENSMUSG00000025024	Smndc1	100	99.160	ENSANAG00000032875	SMNDC1	100	99.160	Aotus_nancymaae
ENSMUSG00000025024	Smndc1	100	76.050	ENSACLG00000016360	smndc1	100	76.050	Astatotilapia_calliptera
ENSMUSG00000025024	Smndc1	100	76.050	ENSAMXG00000020310	smndc1	100	76.050	Astyanax_mexicanus
ENSMUSG00000025024	Smndc1	100	98.739	ENSBTAG00000000551	SMNDC1	100	98.739	Bos_taurus
ENSMUSG00000025024	Smndc1	100	99.160	ENSCJAG00000018624	SMNDC1	100	99.160	Callithrix_jacchus
ENSMUSG00000025024	Smndc1	100	99.160	ENSCAFG00000010720	SMNDC1	100	99.160	Canis_familiaris
ENSMUSG00000025024	Smndc1	100	99.160	ENSCAFG00020011913	SMNDC1	100	99.160	Canis_lupus_dingo
ENSMUSG00000025024	Smndc1	100	98.739	ENSCHIG00000010604	SMNDC1	100	98.739	Capra_hircus
ENSMUSG00000025024	Smndc1	100	98.739	ENSTSYG00000026454	SMNDC1	100	98.739	Carlito_syrichta
ENSMUSG00000025024	Smndc1	84	98.010	ENSCAPG00000009132	SMNDC1	100	98.010	Cavia_aperea
ENSMUSG00000025024	Smndc1	100	98.319	ENSCPOG00000031666	SMNDC1	100	98.319	Cavia_porcellus
ENSMUSG00000025024	Smndc1	100	99.160	ENSCCAG00000021793	SMNDC1	100	99.160	Cebus_capucinus
ENSMUSG00000025024	Smndc1	100	98.739	ENSCATG00000035910	SMNDC1	100	98.739	Cercocebus_atys
ENSMUSG00000025024	Smndc1	100	97.899	ENSCLAG00000002838	SMNDC1	100	97.899	Chinchilla_lanigera
ENSMUSG00000025024	Smndc1	100	99.160	ENSCSAG00000005169	SMNDC1	100	99.160	Chlorocebus_sabaeus
ENSMUSG00000025024	Smndc1	81	98.446	ENSCHOG00000002936	SMNDC1	100	98.446	Choloepus_hoffmanni
ENSMUSG00000025024	Smndc1	100	97.059	ENSCPBG00000012837	SMNDC1	100	97.059	Chrysemys_picta_bellii
ENSMUSG00000025024	Smndc1	100	99.160	ENSCANG00000031720	-	100	99.160	Colobus_angolensis_palliatus
ENSMUSG00000025024	Smndc1	100	91.597	ENSCANG00000034620	-	100	91.597	Colobus_angolensis_palliatus
ENSMUSG00000025024	Smndc1	100	78.571	ENSCANG00000036994	-	100	78.571	Colobus_angolensis_palliatus
ENSMUSG00000025024	Smndc1	100	98.319	ENSCGRG00001012973	Smndc1	100	98.319	Cricetulus_griseus_chok1gshd
ENSMUSG00000025024	Smndc1	100	98.319	ENSCGRG00000012396	Smndc1	100	98.319	Cricetulus_griseus_crigri
ENSMUSG00000025024	Smndc1	100	76.050	ENSCSEG00000015621	smndc1	100	76.050	Cynoglossus_semilaevis
ENSMUSG00000025024	Smndc1	100	76.891	ENSCVAG00000020432	smndc1	100	76.891	Cyprinodon_variegatus
ENSMUSG00000025024	Smndc1	100	78.571	ENSDARG00000056235	smndc1	100	78.571	Danio_rerio
ENSMUSG00000025024	Smndc1	100	99.160	ENSDNOG00000016387	SMNDC1	83	99.160	Dasypus_novemcinctus
ENSMUSG00000025024	Smndc1	100	99.160	ENSDORG00000023715	Smndc1	100	99.160	Dipodomys_ordii
ENSMUSG00000025024	Smndc1	95	41.767	FBgn0039977	CG17454	98	42.972	Drosophila_melanogaster
ENSMUSG00000025024	Smndc1	100	70.954	ENSEBUG00000010929	smndc1	100	70.954	Eptatretus_burgeri
ENSMUSG00000025024	Smndc1	100	99.160	ENSEASG00005014930	SMNDC1	100	99.160	Equus_asinus_asinus
ENSMUSG00000025024	Smndc1	100	99.160	ENSECAG00000029973	SMNDC1	100	99.160	Equus_caballus
ENSMUSG00000025024	Smndc1	83	69.697	ENSEEUG00000013407	-	100	69.697	Erinaceus_europaeus
ENSMUSG00000025024	Smndc1	100	77.731	ENSELUG00000000227	smndc1	100	77.731	Esox_lucius
ENSMUSG00000025024	Smndc1	100	99.160	ENSFCAG00000027353	SMNDC1	100	99.160	Felis_catus
ENSMUSG00000025024	Smndc1	100	95.378	ENSFALG00000002306	SMNDC1	100	95.378	Ficedula_albicollis
ENSMUSG00000025024	Smndc1	100	98.739	ENSFDAG00000006468	SMNDC1	100	98.739	Fukomys_damarensis
ENSMUSG00000025024	Smndc1	100	76.471	ENSFHEG00000020150	smndc1	100	76.471	Fundulus_heteroclitus
ENSMUSG00000025024	Smndc1	100	76.891	ENSGMOG00000016585	smndc1	100	76.891	Gadus_morhua
ENSMUSG00000025024	Smndc1	100	95.378	ENSGALG00000008561	SMNDC1	100	95.378	Gallus_gallus
ENSMUSG00000025024	Smndc1	100	75.210	ENSGAFG00000011582	smndc1	100	75.210	Gambusia_affinis
ENSMUSG00000025024	Smndc1	100	75.630	ENSGACG00000009468	smndc1	100	75.630	Gasterosteus_aculeatus
ENSMUSG00000025024	Smndc1	100	97.059	ENSGAGG00000024547	SMNDC1	100	97.059	Gopherus_agassizii
ENSMUSG00000025024	Smndc1	100	99.160	ENSGGOG00000010071	SMNDC1	100	99.160	Gorilla_gorilla
ENSMUSG00000025024	Smndc1	100	76.050	ENSHBUG00000017596	smndc1	100	76.050	Haplochromis_burtoni
ENSMUSG00000025024	Smndc1	100	68.443	ENSHGLG00000001157	-	100	65.306	Heterocephalus_glaber_female
ENSMUSG00000025024	Smndc1	100	98.739	ENSHGLG00000013390	-	100	98.739	Heterocephalus_glaber_female
ENSMUSG00000025024	Smndc1	100	76.639	ENSHGLG00100004278	-	100	76.230	Heterocephalus_glaber_male
ENSMUSG00000025024	Smndc1	100	98.739	ENSHGLG00100004814	-	100	98.739	Heterocephalus_glaber_male
ENSMUSG00000025024	Smndc1	100	74.895	ENSHCOG00000000783	smndc1	100	74.895	Hippocampus_comes
ENSMUSG00000025024	Smndc1	100	77.311	ENSIPUG00000004217	smndc1	100	77.311	Ictalurus_punctatus
ENSMUSG00000025024	Smndc1	100	98.739	ENSSTOG00000006088	SMNDC1	100	98.739	Ictidomys_tridecemlineatus
ENSMUSG00000025024	Smndc1	100	98.319	ENSJJAG00000019974	Smndc1	100	98.319	Jaculus_jaculus
ENSMUSG00000025024	Smndc1	100	75.210	ENSKMAG00000020134	smndc1	100	75.210	Kryptolebias_marmoratus
ENSMUSG00000025024	Smndc1	100	74.370	ENSLBEG00000004598	smndc1	100	74.370	Labrus_bergylta
ENSMUSG00000025024	Smndc1	100	84.034	ENSLACG00000007784	SMNDC1	100	84.034	Latimeria_chalumnae
ENSMUSG00000025024	Smndc1	100	84.034	ENSLOCG00000012355	smndc1	100	84.034	Lepisosteus_oculatus
ENSMUSG00000025024	Smndc1	100	98.739	ENSLAFG00000014353	SMNDC1	100	98.739	Loxodonta_africana
ENSMUSG00000025024	Smndc1	100	99.160	ENSMFAG00000002433	-	100	99.160	Macaca_fascicularis
ENSMUSG00000025024	Smndc1	100	81.092	ENSMFAG00000038381	-	100	81.092	Macaca_fascicularis
ENSMUSG00000025024	Smndc1	100	99.160	ENSMMUG00000007775	SMNDC1	100	99.160	Macaca_mulatta
ENSMUSG00000025024	Smndc1	100	81.092	ENSMMUG00000045875	-	100	81.092	Macaca_mulatta
ENSMUSG00000025024	Smndc1	100	87.815	ENSMNEG00000033853	-	100	87.815	Macaca_nemestrina
ENSMUSG00000025024	Smndc1	100	99.160	ENSMNEG00000042963	-	100	99.160	Macaca_nemestrina
ENSMUSG00000025024	Smndc1	100	92.887	ENSMLEG00000040236	SMNDC1	100	92.469	Mandrillus_leucophaeus
ENSMUSG00000025024	Smndc1	89	73.239	ENSMAMG00000018233	smndc1	87	73.239	Mastacembelus_armatus
ENSMUSG00000025024	Smndc1	100	76.050	ENSMZEG00005027510	smndc1	100	76.050	Maylandia_zebra
ENSMUSG00000025024	Smndc1	84	95.000	ENSMGAG00000010777	SMNDC1	84	95.000	Meleagris_gallopavo
ENSMUSG00000025024	Smndc1	99	79.747	ENSMAUG00000005459	-	93	79.747	Mesocricetus_auratus
ENSMUSG00000025024	Smndc1	100	99.160	ENSMAUG00000012243	-	100	99.160	Mesocricetus_auratus
ENSMUSG00000025024	Smndc1	100	98.319	ENSMICG00000027336	-	100	98.319	Microcebus_murinus
ENSMUSG00000025024	Smndc1	100	85.294	ENSMICG00000031640	-	100	85.294	Microcebus_murinus
ENSMUSG00000025024	Smndc1	100	98.739	ENSMOCG00000002458	Smndc1	100	98.739	Microtus_ochrogaster
ENSMUSG00000025024	Smndc1	100	76.471	ENSMMOG00000008856	smndc1	100	76.471	Mola_mola
ENSMUSG00000025024	Smndc1	100	99.160	ENSMODG00000010542	SMNDC1	100	99.160	Monodelphis_domestica
ENSMUSG00000025024	Smndc1	100	76.050	ENSMALG00000017598	smndc1	100	76.050	Monopterus_albus
ENSMUSG00000025024	Smndc1	100	99.580	MGP_CAROLIEiJ_G0023072	Smndc1	100	99.580	Mus_caroli
ENSMUSG00000025024	Smndc1	100	99.580	MGP_PahariEiJ_G0014560	Smndc1	100	99.580	Mus_pahari
ENSMUSG00000025024	Smndc1	100	100.000	MGP_SPRETEiJ_G0023993	Smndc1	100	100.000	Mus_spretus
ENSMUSG00000025024	Smndc1	100	99.160	ENSMPUG00000002089	SMNDC1	100	99.160	Mustela_putorius_furo
ENSMUSG00000025024	Smndc1	100	97.899	ENSMLUG00000016007	SMNDC1	100	97.899	Myotis_lucifugus
ENSMUSG00000025024	Smndc1	100	98.319	ENSNGAG00000006833	Smndc1	100	98.319	Nannospalax_galili
ENSMUSG00000025024	Smndc1	100	75.630	ENSNBRG00000017089	smndc1	100	75.630	Neolamprologus_brichardi
ENSMUSG00000025024	Smndc1	100	99.160	ENSNLEG00000015471	SMNDC1	100	99.160	Nomascus_leucogenys
ENSMUSG00000025024	Smndc1	82	58.000	ENSMEUG00000010120	-	99	58.500	Notamacropus_eugenii
ENSMUSG00000025024	Smndc1	100	98.319	ENSOPRG00000015348	SMNDC1	100	98.319	Ochotona_princeps
ENSMUSG00000025024	Smndc1	100	69.328	ENSODEG00000007594	-	100	66.387	Octodon_degus
ENSMUSG00000025024	Smndc1	100	75.630	ENSONIG00000000434	smndc1	100	75.630	Oreochromis_niloticus
ENSMUSG00000025024	Smndc1	100	97.899	ENSOANG00000001598	SMNDC1	100	97.899	Ornithorhynchus_anatinus
ENSMUSG00000025024	Smndc1	100	74.790	ENSOCUG00000012274	-	100	76.471	Oryctolagus_cuniculus
ENSMUSG00000025024	Smndc1	100	98.319	ENSOCUG00000008145	-	100	98.319	Oryctolagus_cuniculus
ENSMUSG00000025024	Smndc1	100	75.630	ENSORLG00000005934	smndc1	95	75.630	Oryzias_latipes
ENSMUSG00000025024	Smndc1	100	75.630	ENSORLG00020008796	smndc1	95	75.630	Oryzias_latipes_hni
ENSMUSG00000025024	Smndc1	100	75.630	ENSORLG00015013666	smndc1	100	75.630	Oryzias_latipes_hsok
ENSMUSG00000025024	Smndc1	100	77.311	ENSOMEG00000007590	smndc1	100	77.311	Oryzias_melastigma
ENSMUSG00000025024	Smndc1	100	98.739	ENSOGAG00000000571	SMNDC1	100	98.739	Otolemur_garnettii
ENSMUSG00000025024	Smndc1	100	98.739	ENSOARG00000009500	SMNDC1	100	98.739	Ovis_aries
ENSMUSG00000025024	Smndc1	100	99.160	ENSPPAG00000027815	SMNDC1	100	99.160	Pan_paniscus
ENSMUSG00000025024	Smndc1	100	99.160	ENSPPRG00000013749	SMNDC1	100	99.160	Panthera_pardus
ENSMUSG00000025024	Smndc1	100	99.160	ENSPTIG00000011451	SMNDC1	100	99.160	Panthera_tigris_altaica
ENSMUSG00000025024	Smndc1	100	99.160	ENSPTRG00000002937	SMNDC1	100	99.160	Pan_troglodytes
ENSMUSG00000025024	Smndc1	100	93.277	ENSPANG00000031346	-	100	93.277	Papio_anubis
ENSMUSG00000025024	Smndc1	100	99.160	ENSPANG00000020805	-	100	99.160	Papio_anubis
ENSMUSG00000025024	Smndc1	100	80.672	ENSPKIG00000017164	smndc1	100	80.672	Paramormyrops_kingsleyae
ENSMUSG00000025024	Smndc1	100	97.479	ENSPSIG00000012257	SMNDC1	100	97.479	Pelodiscus_sinensis
ENSMUSG00000025024	Smndc1	100	73.529	ENSPMGG00000015651	smndc1	100	73.529	Periophthalmus_magnuspinnatus
ENSMUSG00000025024	Smndc1	100	99.160	ENSPEMG00000022058	Smndc1	100	99.160	Peromyscus_maniculatus_bairdii
ENSMUSG00000025024	Smndc1	100	67.213	ENSPMAG00000007705	smndc1	100	67.623	Petromyzon_marinus
ENSMUSG00000025024	Smndc1	100	99.160	ENSPCIG00000018419	SMNDC1	100	99.160	Phascolarctos_cinereus
ENSMUSG00000025024	Smndc1	97	62.174	ENSPCIG00000009693	-	100	62.174	Phascolarctos_cinereus
ENSMUSG00000025024	Smndc1	100	75.630	ENSPFOG00000017113	smndc1	100	75.630	Poecilia_formosa
ENSMUSG00000025024	Smndc1	100	76.050	ENSPLAG00000010372	smndc1	100	76.050	Poecilia_latipinna
ENSMUSG00000025024	Smndc1	100	76.050	ENSPMEG00000012288	smndc1	100	76.050	Poecilia_mexicana
ENSMUSG00000025024	Smndc1	100	75.210	ENSPREG00000012279	smndc1	100	75.210	Poecilia_reticulata
ENSMUSG00000025024	Smndc1	100	99.160	ENSPPYG00000002643	SMNDC1	100	99.160	Pongo_abelii
ENSMUSG00000025024	Smndc1	81	98.446	ENSPCAG00000016183	SMNDC1	100	98.446	Procavia_capensis
ENSMUSG00000025024	Smndc1	100	98.739	ENSPCOG00000024343	SMNDC1	100	98.739	Propithecus_coquereli
ENSMUSG00000025024	Smndc1	100	76.471	ENSPVAG00000004368	SMNDC1	100	76.471	Pteropus_vampyrus
ENSMUSG00000025024	Smndc1	92	69.778	ENSPNYG00000024093	smndc1	98	69.778	Pundamilia_nyererei
ENSMUSG00000025024	Smndc1	100	76.471	ENSPNAG00000025285	smndc1	100	76.471	Pygocentrus_nattereri
ENSMUSG00000025024	Smndc1	100	99.580	ENSRNOG00000014833	Smndc1	100	99.580	Rattus_norvegicus
ENSMUSG00000025024	Smndc1	100	98.739	ENSRBIG00000000224	-	100	98.739	Rhinopithecus_bieti
ENSMUSG00000025024	Smndc1	100	82.773	ENSRBIG00000032452	-	100	82.773	Rhinopithecus_bieti
ENSMUSG00000025024	Smndc1	100	83.193	ENSRROG00000039125	-	100	83.193	Rhinopithecus_roxellana
ENSMUSG00000025024	Smndc1	100	99.160	ENSRROG00000044992	-	100	99.160	Rhinopithecus_roxellana
ENSMUSG00000025024	Smndc1	100	99.160	ENSSBOG00000026789	SMNDC1	100	99.160	Saimiri_boliviensis_boliviensis
ENSMUSG00000025024	Smndc1	100	99.160	ENSSHAG00000015189	SMNDC1	100	99.160	Sarcophilus_harrisii
ENSMUSG00000025024	Smndc1	100	79.832	ENSSFOG00015008311	smndc1	100	79.832	Scleropages_formosus
ENSMUSG00000025024	Smndc1	100	75.630	ENSSMAG00000020118	smndc1	100	75.630	Scophthalmus_maximus
ENSMUSG00000025024	Smndc1	100	76.471	ENSSDUG00000015330	smndc1	100	76.471	Seriola_dumerili
ENSMUSG00000025024	Smndc1	100	76.471	ENSSLDG00000017325	smndc1	100	76.471	Seriola_lalandi_dorsalis
ENSMUSG00000025024	Smndc1	100	97.899	ENSSARG00000006063	SMNDC1	100	97.899	Sorex_araneus
ENSMUSG00000025024	Smndc1	100	95.798	ENSSPUG00000004574	SMNDC1	100	95.798	Sphenodon_punctatus
ENSMUSG00000025024	Smndc1	100	74.370	ENSSPAG00000000338	smndc1	100	74.370	Stegastes_partitus
ENSMUSG00000025024	Smndc1	100	98.739	ENSSSCG00000030507	SMNDC1	100	98.739	Sus_scrofa
ENSMUSG00000025024	Smndc1	100	95.378	ENSTGUG00000010599	SMNDC1	100	95.378	Taeniopygia_guttata
ENSMUSG00000025024	Smndc1	100	73.950	ENSTRUG00000023281	smndc1	100	73.950	Takifugu_rubripes
ENSMUSG00000025024	Smndc1	100	74.790	ENSTNIG00000013331	smndc1	100	74.790	Tetraodon_nigroviridis
ENSMUSG00000025024	Smndc1	100	98.739	ENSTBEG00000014337	SMNDC1	100	98.739	Tupaia_belangeri
ENSMUSG00000025024	Smndc1	100	99.160	ENSUAMG00000008142	SMNDC1	100	99.160	Ursus_americanus
ENSMUSG00000025024	Smndc1	100	99.160	ENSUMAG00000023722	SMNDC1	100	99.160	Ursus_maritimus
ENSMUSG00000025024	Smndc1	83	98.485	ENSVPAG00000003402	SMNDC1	100	98.485	Vicugna_pacos
ENSMUSG00000025024	Smndc1	100	99.160	ENSVVUG00000007820	SMNDC1	100	99.160	Vulpes_vulpes
ENSMUSG00000025024	Smndc1	60	81.690	ENSXETG00000015415	SMNDC1	100	81.690	Xenopus_tropicalis
ENSMUSG00000025024	Smndc1	100	75.210	ENSXCOG00000009159	smndc1	100	75.210	Xiphophorus_couchianus
ENSMUSG00000025024	Smndc1	100	74.790	ENSXMAG00000012755	smndc1	100	74.790	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0006915	apoptotic process	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process