EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Gene Ontology

Description

Ensembl ID: ENSMUSG00000025044 (Gene tree)
Gene ID: 20288
Gene Symbol: Msr1
Alias: MRS-A|MSR-A|SR-AI|SR-AII|Scara1|Scvr
Full Name: macrophage scavenger receptor 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 60989
Position: chr8: 39581685-39642673
Accession: 98257
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000210589	-	2547	-	-	- (aa)	-	-
ENSMUST00000210525	-	691	-	ENSMUSP00000147644	213 (aa)	-	A0A1B0GRS5
ENSMUST00000026021	-	1424	XM_006509311	ENSMUSP00000026021	458 (aa)	XP_006509374	P30204
ENSMUST00000170091	-	3636	-	ENSMUSP00000132535	354 (aa)	-	P30204
ENSMUST00000210681	-	421	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000025044's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04145	Phagosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000025044's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001540	amyloid-beta binding	21873635.	IBA	Function
GO:0001540	amyloid-beta binding	11240025.	IGI	Function
GO:0005044	scavenger receptor activity	-	IEA	Function
GO:0005581	collagen trimer	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005886	plasma membrane	21873635.	IBA	Component
GO:0005886	plasma membrane	11240025.	IMP	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006897	endocytosis	-	IEA	Process
GO:0006898	receptor-mediated endocytosis	22438044.	IGI	Process
GO:0006911	phagocytosis, engulfment	22438044.	IGI	Process
GO:0010629	negative regulation of gene expression	11240025.	IMP	Process
GO:0010744	positive regulation of macrophage derived foam cell differentiation	12376530.	IGI	Process
GO:0010886	positive regulation of cholesterol storage	21873635.	IBA	Process
GO:0010886	positive regulation of cholesterol storage	12376530.	IMP	Process
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0030169	low-density lipoprotein particle binding	21873635.	IBA	Function
GO:0030169	low-density lipoprotein particle binding	12376530.	IMP	Function
GO:0030301	cholesterol transport	12376530.	IMP	Process
GO:0031410	cytoplasmic vesicle	-	ISO	Component
GO:0034362	low-density lipoprotein particle	-	IEA	Component
GO:0034381	plasma lipoprotein particle clearance	21873635.	IBA	Process
GO:0034381	plasma lipoprotein particle clearance	12376530.	IMP	Process
GO:0038024	cargo receptor activity	22438044.	IGI	Function
GO:0042953	lipoprotein transport	17148552.	IMP	Process
GO:0097242	amyloid-beta clearance	21873635.	IBA	Process
GO:0097242	amyloid-beta clearance	22438044.	IGI	Process
GO:0097242	amyloid-beta clearance	11240025.	IMP	Process