EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000025047 (Gene tree)
Gene ID: 18572
Gene Symbol: Pdcd11
Alias: 1110021I22Rik|ALG-4
Full Name: programmed cell death 11
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 40378 bases
Position: chr19:47090766-47131143
Accession: 1341788
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000072008	Suf	PF05843.14	3.9e-09	1	1
ENSMUSP00000072008	S1	PF00575.23	3.5e-64	1	4
ENSMUSP00000072008	S1	PF00575.23	3.5e-64	2	4
ENSMUSP00000072008	S1	PF00575.23	3.5e-64	3	4
ENSMUSP00000072008	S1	PF00575.23	3.5e-64	4	4

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000072141	-	6041	XM_011247165	ENSMUSP00000072008	1862 (aa)	XP_011245467	Q6NS46

Gene Model

Click here to download ENSMUSG00000025047's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000025047's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000025047	Pdcd11	100	80.553	ENSG00000148843	PDCD11	100	80.499	Homo_sapiens
ENSMUSG00000025047	Pdcd11	99	43.913	ENSAPOG00000015629	pdcd11	99	43.633	Acanthochromis_polyacanthus
ENSMUSG00000025047	Pdcd11	99	78.307	ENSAMEG00000017935	PDCD11	99	78.148	Ailuropoda_melanoleuca
ENSMUSG00000025047	Pdcd11	99	43.883	ENSAOCG00000015287	pdcd11	99	43.687	Amphiprion_ocellaris
ENSMUSG00000025047	Pdcd11	53	43.043	ENSAPEG00000020240	pdcd11	96	43.072	Amphiprion_percula
ENSMUSG00000025047	Pdcd11	99	42.933	ENSATEG00000021043	pdcd11	99	43.237	Anabas_testudineus
ENSMUSG00000025047	Pdcd11	99	54.164	ENSAPLG00000010301	PDCD11	99	54.492	Anas_platyrhynchos
ENSMUSG00000025047	Pdcd11	99	53.776	ENSACAG00000004796	PDCD11	99	53.455	Anolis_carolinensis
ENSMUSG00000025047	Pdcd11	99	79.915	ENSANAG00000034576	PDCD11	99	79.595	Aotus_nancymaae
ENSMUSG00000025047	Pdcd11	89	65.580	ENSACLG00000018236	pdcd11	98	59.829	Astatotilapia_calliptera
ENSMUSG00000025047	Pdcd11	99	40.519	ENSAMXG00000005458	pdcd11	100	40.340	Astyanax_mexicanus
ENSMUSG00000025047	Pdcd11	100	76.112	ENSBTAG00000009715	PDCD11	100	75.847	Bos_taurus
ENSMUSG00000025047	Pdcd11	99	79.062	ENSCJAG00000018257	PDCD11	99	79.329	Callithrix_jacchus
ENSMUSG00000025047	Pdcd11	99	77.748	ENSCAFG00000010411	PDCD11	100	78.173	Canis_familiaris
ENSMUSG00000025047	Pdcd11	99	78.863	ENSCAFG00020010369	PDCD11	100	78.874	Canis_lupus_dingo
ENSMUSG00000025047	Pdcd11	99	75.994	ENSCHIG00000025218	PDCD11	100	75.623	Capra_hircus
ENSMUSG00000025047	Pdcd11	98	72.917	ENSTSYG00000033423	PDCD11	99	72.737	Carlito_syrichta
ENSMUSG00000025047	Pdcd11	91	68.633	ENSCAPG00000005386	PDCD11	99	68.633	Cavia_aperea
ENSMUSG00000025047	Pdcd11	100	76.665	ENSCPOG00000010957	PDCD11	99	77.821	Cavia_porcellus
ENSMUSG00000025047	Pdcd11	99	79.702	ENSCCAG00000018950	PDCD11	99	79.702	Cebus_capucinus
ENSMUSG00000025047	Pdcd11	100	80.786	ENSCATG00000044331	PDCD11	100	80.732	Cercocebus_atys
ENSMUSG00000025047	Pdcd11	100	77.896	ENSCLAG00000001029	PDCD11	100	77.428	Chinchilla_lanigera
ENSMUSG00000025047	Pdcd11	100	80.659	ENSCSAG00000005346	PDCD11	100	80.606	Chlorocebus_sabaeus
ENSMUSG00000025047	Pdcd11	84	95.349	ENSCHOG00000004796	PDCD11	88	95.349	Choloepus_hoffmanni
ENSMUSG00000025047	Pdcd11	91	73.429	ENSCPBG00000024487	PDCD11	99	74.929	Chrysemys_picta_bellii
ENSMUSG00000025047	Pdcd11	100	80.181	ENSCANG00000043300	PDCD11	100	80.393	Colobus_angolensis_palliatus
ENSMUSG00000025047	Pdcd11	100	85.531	ENSCGRG00001006458	Pdcd11	100	85.531	Cricetulus_griseus_chok1gshd
ENSMUSG00000025047	Pdcd11	100	85.432	ENSCGRG00000003583	Pdcd11	100	85.432	Cricetulus_griseus_crigri
ENSMUSG00000025047	Pdcd11	97	43.373	ENSCSEG00000010739	pdcd11	99	43.562	Cynoglossus_semilaevis
ENSMUSG00000025047	Pdcd11	89	61.607	ENSCVAG00000018903	pdcd11	99	47.244	Cyprinodon_variegatus
ENSMUSG00000025047	Pdcd11	99	42.324	ENSDARG00000052480	pdcd11	99	42.088	Danio_rerio
ENSMUSG00000025047	Pdcd11	100	76.695	ENSDNOG00000013838	PDCD11	100	76.854	Dasypus_novemcinctus
ENSMUSG00000025047	Pdcd11	100	79.711	ENSDORG00000010420	Pdcd11	100	80.032	Dipodomys_ordii
ENSMUSG00000025047	Pdcd11	60	39.812	FBgn0039182	CG5728	74	40.636	Drosophila_melanogaster
ENSMUSG00000025047	Pdcd11	95	66.835	ENSETEG00000000813	PDCD11	100	66.498	Echinops_telfairi
ENSMUSG00000025047	Pdcd11	67	51.839	ENSEBUG00000002358	-	92	52.941	Eptatretus_burgeri
ENSMUSG00000025047	Pdcd11	96	79.356	ENSEASG00005015159	PDCD11	100	79.423	Equus_asinus_asinus
ENSMUSG00000025047	Pdcd11	100	79.215	ENSECAG00000020507	PDCD11	100	78.897	Equus_caballus
ENSMUSG00000025047	Pdcd11	98	83.000	ENSEEUG00000009245	PDCD11	91	83.000	Erinaceus_europaeus
ENSMUSG00000025047	Pdcd11	99	44.008	ENSELUG00000004211	pdcd11	99	43.820	Esox_lucius
ENSMUSG00000025047	Pdcd11	99	78.348	ENSFCAG00000002384	PDCD11	99	78.579	Felis_catus
ENSMUSG00000025047	Pdcd11	99	54.949	ENSFALG00000008775	PDCD11	99	55.051	Ficedula_albicollis
ENSMUSG00000025047	Pdcd11	100	76.817	ENSFDAG00000009532	PDCD11	100	76.605	Fukomys_damarensis
ENSMUSG00000025047	Pdcd11	94	65.878	ENSFHEG00000022997	pdcd11	99	66.901	Fundulus_heteroclitus
ENSMUSG00000025047	Pdcd11	92	43.247	ENSGMOG00000004186	pdcd11	94	43.157	Gadus_morhua
ENSMUSG00000025047	Pdcd11	76	53.263	ENSGALG00000008265	PDCD11	99	52.765	Gallus_gallus
ENSMUSG00000025047	Pdcd11	93	49.267	ENSGAFG00000012806	pdcd11	99	48.901	Gambusia_affinis
ENSMUSG00000025047	Pdcd11	99	43.092	ENSGACG00000018233	pdcd11	97	58.793	Gasterosteus_aculeatus
ENSMUSG00000025047	Pdcd11	95	58.576	ENSGAGG00000024314	PDCD11	99	58.464	Gopherus_agassizii
ENSMUSG00000025047	Pdcd11	100	80.234	ENSGGOG00000011621	PDCD11	100	80.181	Gorilla_gorilla
ENSMUSG00000025047	Pdcd11	99	43.970	ENSHBUG00000020226	pdcd11	99	43.817	Haplochromis_burtoni
ENSMUSG00000025047	Pdcd11	100	77.062	ENSHGLG00000001462	PDCD11	100	77.115	Heterocephalus_glaber_female
ENSMUSG00000025047	Pdcd11	100	76.370	ENSHGLG00100018779	PDCD11	100	76.424	Heterocephalus_glaber_male
ENSMUSG00000025047	Pdcd11	99	42.363	ENSHCOG00000016006	pdcd11	99	42.259	Hippocampus_comes
ENSMUSG00000025047	Pdcd11	63	39.711	ENSIPUG00000015102	pdcd11	99	41.756	Ictalurus_punctatus
ENSMUSG00000025047	Pdcd11	100	79.925	ENSSTOG00000014553	PDCD11	100	79.872	Ictidomys_tridecemlineatus
ENSMUSG00000025047	Pdcd11	100	80.942	ENSJJAG00000015523	Pdcd11	100	80.942	Jaculus_jaculus
ENSMUSG00000025047	Pdcd11	99	48.164	ENSLOCG00000011818	pdcd11	99	47.923	Lepisosteus_oculatus
ENSMUSG00000025047	Pdcd11	100	77.492	ENSLAFG00000008398	PDCD11	100	77.438	Loxodonta_africana
ENSMUSG00000025047	Pdcd11	100	80.553	ENSMFAG00000044058	PDCD11	100	80.765	Macaca_fascicularis
ENSMUSG00000025047	Pdcd11	100	80.499	ENSMMUG00000007058	PDCD11	100	80.712	Macaca_mulatta
ENSMUSG00000025047	Pdcd11	100	80.499	ENSMNEG00000040726	PDCD11	99	80.765	Macaca_nemestrina
ENSMUSG00000025047	Pdcd11	100	79.979	ENSMLEG00000040978	PDCD11	100	79.629	Mandrillus_leucophaeus
ENSMUSG00000025047	Pdcd11	99	42.918	ENSMAMG00000009572	pdcd11	99	42.971	Mastacembelus_armatus
ENSMUSG00000025047	Pdcd11	99	43.757	ENSMZEG00005008949	pdcd11	99	43.603	Maylandia_zebra
ENSMUSG00000025047	Pdcd11	99	54.545	ENSMGAG00000010482	PDCD11	99	54.723	Meleagris_gallopavo
ENSMUSG00000025047	Pdcd11	89	87.419	ENSMAUG00000014924	Pdcd11	97	87.310	Mesocricetus_auratus
ENSMUSG00000025047	Pdcd11	100	79.296	ENSMICG00000012421	PDCD11	100	79.242	Microcebus_murinus
ENSMUSG00000025047	Pdcd11	100	84.615	ENSMOCG00000021792	Pdcd11	100	84.615	Microtus_ochrogaster
ENSMUSG00000025047	Pdcd11	99	40.106	ENSMMOG00000007572	pdcd11	97	43.581	Mola_mola
ENSMUSG00000025047	Pdcd11	99	60.032	ENSMODG00000011077	PDCD11	99	60.433	Monodelphis_domestica
ENSMUSG00000025047	Pdcd11	99	40.819	ENSMALG00000003859	pdcd11	98	43.011	Monopterus_albus
ENSMUSG00000025047	Pdcd11	100	97.046	MGP_CAROLIEiJ_G0023050	Pdcd11	100	97.046	Mus_caroli
ENSMUSG00000025047	Pdcd11	100	93.590	MGP_PahariEiJ_G0014540	Pdcd11	100	94.071	Mus_pahari
ENSMUSG00000025047	Pdcd11	100	98.818	MGP_SPRETEiJ_G0023971	Pdcd11	100	98.818	Mus_spretus
ENSMUSG00000025047	Pdcd11	99	77.548	ENSMPUG00000016829	PDCD11	100	78.132	Mustela_putorius_furo
ENSMUSG00000025047	Pdcd11	100	79.248	ENSMLUG00000004997	PDCD11	100	79.429	Myotis_lucifugus
ENSMUSG00000025047	Pdcd11	100	82.253	ENSNGAG00000018143	Pdcd11	100	82.519	Nannospalax_galili
ENSMUSG00000025047	Pdcd11	85	57.396	ENSNBRG00000021596	pdcd11	99	55.587	Neolamprologus_brichardi
ENSMUSG00000025047	Pdcd11	100	77.683	ENSNLEG00000026700	PDCD11	100	77.630	Nomascus_leucogenys
ENSMUSG00000025047	Pdcd11	70	79.476	ENSMEUG00000013719	-	71	79.476	Notamacropus_eugenii
ENSMUSG00000025047	Pdcd11	100	74.416	ENSOPRG00000010593	PDCD11	100	74.363	Ochotona_princeps
ENSMUSG00000025047	Pdcd11	100	75.689	ENSODEG00000008079	PDCD11	99	75.742	Octodon_degus
ENSMUSG00000025047	Pdcd11	99	43.917	ENSONIG00000018835	pdcd11	99	43.810	Oreochromis_niloticus
ENSMUSG00000025047	Pdcd11	99	58.930	ENSOANG00000001636	-	99	58.707	Ornithorhynchus_anatinus
ENSMUSG00000025047	Pdcd11	100	78.537	ENSOCUG00000006312	PDCD11	100	78.590	Oryctolagus_cuniculus
ENSMUSG00000025047	Pdcd11	99	42.933	ENSORLG00020003642	pdcd11	99	43.314	Oryzias_latipes_hni
ENSMUSG00000025047	Pdcd11	99	42.979	ENSORLG00015001618	pdcd11	99	43.321	Oryzias_latipes_hsok
ENSMUSG00000025047	Pdcd11	74	42.869	ENSOMEG00000010904	pdcd11	98	42.834	Oryzias_melastigma
ENSMUSG00000025047	Pdcd11	100	77.825	ENSOGAG00000008683	PDCD11	100	77.695	Otolemur_garnettii
ENSMUSG00000025047	Pdcd11	99	75.835	ENSOARG00000003719	PDCD11	100	75.517	Ovis_aries
ENSMUSG00000025047	Pdcd11	100	77.601	ENSPPAG00000024593	PDCD11	100	78.405	Pan_paniscus
ENSMUSG00000025047	Pdcd11	99	78.242	ENSPPRG00000015133	PDCD11	99	78.408	Panthera_pardus
ENSMUSG00000025047	Pdcd11	99	78.190	ENSPTIG00000011433	PDCD11	99	78.420	Panthera_tigris_altaica
ENSMUSG00000025047	Pdcd11	100	80.287	ENSPTRG00000002911	PDCD11	100	80.234	Pan_troglodytes
ENSMUSG00000025047	Pdcd11	100	80.712	ENSPANG00000020959	PDCD11	100	80.659	Papio_anubis
ENSMUSG00000025047	Pdcd11	99	45.498	ENSPKIG00000000973	pdcd11	99	45.537	Paramormyrops_kingsleyae
ENSMUSG00000025047	Pdcd11	78	55.586	ENSPSIG00000005102	PDCD11	95	55.144	Pelodiscus_sinensis
ENSMUSG00000025047	Pdcd11	59	63.423	ENSPMGG00000007289	pdcd11	92	47.036	Periophthalmus_magnuspinnatus
ENSMUSG00000025047	Pdcd11	100	84.440	ENSPEMG00000010315	Pdcd11	100	85.183	Peromyscus_maniculatus_bairdii
ENSMUSG00000025047	Pdcd11	99	41.803	ENSPMAG00000003098	pdcd11	99	41.737	Petromyzon_marinus
ENSMUSG00000025047	Pdcd11	100	64.892	ENSPCIG00000001118	PDCD11	100	64.508	Phascolarctos_cinereus
ENSMUSG00000025047	Pdcd11	99	43.385	ENSPFOG00000006012	pdcd11	99	43.185	Poecilia_formosa
ENSMUSG00000025047	Pdcd11	96	47.754	ENSPLAG00000014494	pdcd11	99	48.563	Poecilia_latipinna
ENSMUSG00000025047	Pdcd11	90	54.212	ENSPMEG00000018177	pdcd11	98	55.292	Poecilia_mexicana
ENSMUSG00000025047	Pdcd11	99	43.383	ENSPREG00000000475	pdcd11	99	43.397	Poecilia_reticulata
ENSMUSG00000025047	Pdcd11	100	76.115	ENSPPYG00000002621	PDCD11	100	76.253	Pongo_abelii
ENSMUSG00000025047	Pdcd11	73	71.211	ENSPCAG00000011663	PDCD11	75	71.211	Procavia_capensis
ENSMUSG00000025047	Pdcd11	92	76.509	ENSPCOG00000023327	PDCD11	99	76.240	Propithecus_coquereli
ENSMUSG00000025047	Pdcd11	100	77.172	ENSPVAG00000004176	PDCD11	100	77.172	Pteropus_vampyrus
ENSMUSG00000025047	Pdcd11	99	43.970	ENSPNYG00000003979	pdcd11	99	43.870	Pundamilia_nyererei
ENSMUSG00000025047	Pdcd11	95	44.501	ENSPNAG00000017225	pdcd11	99	44.420	Pygocentrus_nattereri
ENSMUSG00000025047	Pdcd11	100	90.005	ENSRNOG00000020304	Pdcd11	99	90.058	Rattus_norvegicus
ENSMUSG00000025047	Pdcd11	100	80.234	ENSRBIG00000011889	PDCD11	100	80.446	Rhinopithecus_bieti
ENSMUSG00000025047	Pdcd11	100	80.287	ENSRROG00000030483	PDCD11	100	80.499	Rhinopithecus_roxellana
ENSMUSG00000025047	Pdcd11	86	46.886	YMR229C	-	95	41.908	Saccharomyces_cerevisiae
ENSMUSG00000025047	Pdcd11	99	80.455	ENSSBOG00000030308	PDCD11	99	80.455	Saimiri_boliviensis_boliviensis
ENSMUSG00000025047	Pdcd11	99	63.208	ENSSHAG00000018258	PDCD11	99	63.102	Sarcophilus_harrisii
ENSMUSG00000025047	Pdcd11	99	46.059	ENSSFOG00015003881	pdcd11	99	45.931	Scleropages_formosus
ENSMUSG00000025047	Pdcd11	99	43.710	ENSSMAG00000006612	pdcd11	99	43.740	Scophthalmus_maximus
ENSMUSG00000025047	Pdcd11	95	48.594	ENSSDUG00000021302	pdcd11	99	48.438	Seriola_dumerili
ENSMUSG00000025047	Pdcd11	80	89.286	ENSSARG00000002540	PDCD11	74	89.286	Sorex_araneus
ENSMUSG00000025047	Pdcd11	97	42.654	ENSSPAG00000017558	pdcd11	100	42.473	Stegastes_partitus
ENSMUSG00000025047	Pdcd11	100	76.960	ENSSSCG00000010599	PDCD11	100	77.119	Sus_scrofa
ENSMUSG00000025047	Pdcd11	77	40.512	ENSTRUG00000014291	pdcd11	99	40.618	Takifugu_rubripes
ENSMUSG00000025047	Pdcd11	99	43.298	ENSTNIG00000012085	pdcd11	99	43.214	Tetraodon_nigroviridis
ENSMUSG00000025047	Pdcd11	100	73.595	ENSTBEG00000001893	PDCD11	100	73.754	Tupaia_belangeri
ENSMUSG00000025047	Pdcd11	99	72.525	ENSTTRG00000003356	PDCD11	99	72.790	Tursiops_truncatus
ENSMUSG00000025047	Pdcd11	99	78.337	ENSUAMG00000018015	PDCD11	100	78.454	Ursus_americanus
ENSMUSG00000025047	Pdcd11	100	76.756	ENSUMAG00000023567	PDCD11	100	76.822	Ursus_maritimus
ENSMUSG00000025047	Pdcd11	68	79.104	ENSVPAG00000007405	PDCD11	83	79.104	Vicugna_pacos
ENSMUSG00000025047	Pdcd11	99	77.866	ENSVVUG00000004457	PDCD11	100	78.067	Vulpes_vulpes
ENSMUSG00000025047	Pdcd11	99	48.791	ENSXETG00000009482	pdcd11	99	48.923	Xenopus_tropicalis
ENSMUSG00000025047	Pdcd11	99	37.553	ENSXCOG00000012420	pdcd11	99	37.607	Xiphophorus_couchianus
ENSMUSG00000025047	Pdcd11	99	43.323	ENSXMAG00000004638	pdcd11	99	43.139	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005829	cytosol	10229231.	IDA	Component
GO:0006364	rRNA processing	-	IEA	Process
GO:0006396	RNA processing	-	IEA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0008134	transcription factor binding	-	ISO	Function
GO:0032040	small-subunit processome	21873635.	IBA	Component