EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000025134 (Gene tree)
Gene ID: 21681
Gene Symbol: Alyref
Alias: REF1|Refbp1|Thoc4
Full Name: Aly/REF export factor
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 6245 bases
Position: chr11:120592121-120598365
Accession: 1341044
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000026125	RRM_1	PF00076.22	2.8e-13	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000155325	-	648	-	-	- (aa)	-	-
ENSMUST00000156685	-	711	-	-	- (aa)	-	-
ENSMUST00000026125	-	3527	-	ENSMUSP00000026125	255 (aa)	-	O08583

Gene Model

Click here to download ENSMUSG00000025134's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG
mmu03015	mRNA surveillance pathway	KEGG
mmu03040	Spliceosome	KEGG
mmu05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000025134's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000025134	Alyref	100	63.604	ENSMUSG00000094144	Gm21312	100	54.064
ENSMUSG00000025134	Alyref	100	77.344	ENSMUSG00000060244	Alyref2	100	70.980
ENSMUSG00000025134	Alyref	100	63.604	ENSMUSG00000097878	Gm8764	98	62.424
ENSMUSG00000025134	Alyref	100	63.636	ENSMUSG00000117091	AC153137.1	100	61.977
ENSMUSG00000025134	Alyref	91	67.241	ENSMUSG00000112931	Gm4303	62	66.000
ENSMUSG00000025134	Alyref	100	63.604	ENSMUSG00000091779	Gm21293	100	54.064
ENSMUSG00000025134	Alyref	91	67.241	ENSMUSG00000112856	Gm4305	62	66.000
ENSMUSG00000025134	Alyref	91	67.382	ENSMUSG00000091101	Gm4302	61	66.000
ENSMUSG00000025134	Alyref	91	66.094	ENSMUSG00000096640	Gm4312	62	64.500
ENSMUSG00000025134	Alyref	100	63.604	ENSMUSG00000097427	Gm6763	98	62.424
ENSMUSG00000025134	Alyref	100	64.015	ENSMUSG00000086727	4931428L18Rik	100	61.977
ENSMUSG00000025134	Alyref	100	63.604	ENSMUSG00000095022	Gm20765	100	54.064
ENSMUSG00000025134	Alyref	100	63.604	ENSMUSG00000097550	Gm21304	100	54.064
ENSMUSG00000025134	Alyref	91	66.094	ENSMUSG00000094314	Gm4301	62	64.500
ENSMUSG00000025134	Alyref	100	62.718	ENSMUSG00000090854	Gm4340	100	53.659
ENSMUSG00000025134	Alyref	91	67.241	ENSMUSG00000096744	Gm4307	62	66.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000025134	Alyref	100	96.109	ENSG00000183684	ALYREF	97	96.109	Homo_sapiens
ENSMUSG00000025134	Alyref	100	68.592	ENSAPOG00000018455	ALYREF	100	71.841	Acanthochromis_polyacanthus
ENSMUSG00000025134	Alyref	80	87.560	ENSAMEG00000017463	ALYREF	74	95.628	Ailuropoda_melanoleuca
ENSMUSG00000025134	Alyref	100	76.154	ENSACAG00000010526	ALYREF	100	74.330	Anolis_carolinensis
ENSMUSG00000025134	Alyref	100	83.594	ENSANAG00000028229	-	78	79.688	Aotus_nancymaae
ENSMUSG00000025134	Alyref	69	92.655	ENSANAG00000022638	-	77	92.818	Aotus_nancymaae
ENSMUSG00000025134	Alyref	100	97.276	ENSBTAG00000008498	ALYREF	100	97.276	Bos_taurus
ENSMUSG00000025134	Alyref	100	95.720	ENSCJAG00000039942	ALYREF	97	95.720	Callithrix_jacchus
ENSMUSG00000025134	Alyref	100	96.498	ENSCAFG00000005877	ALYREF	100	96.498	Canis_familiaris
ENSMUSG00000025134	Alyref	100	96.498	ENSCAFG00020009815	ALYREF	100	96.498	Canis_lupus_dingo
ENSMUSG00000025134	Alyref	100	96.512	ENSCHIG00000017396	ALYREF	97	96.512	Capra_hircus
ENSMUSG00000025134	Alyref	87	80.000	ENSTSYG00000002272	ALYREF	69	97.143	Carlito_syrichta
ENSMUSG00000025134	Alyref	52	98.496	ENSCAPG00000014727	-	100	98.496	Cavia_aperea
ENSMUSG00000025134	Alyref	100	97.656	ENSCPOG00000013710	ALYREF	100	97.656	Cavia_porcellus
ENSMUSG00000025134	Alyref	100	75.294	ENSCCAG00000030237	-	100	72.549	Cebus_capucinus
ENSMUSG00000025134	Alyref	100	96.109	ENSCCAG00000020578	-	97	96.109	Cebus_capucinus
ENSMUSG00000025134	Alyref	100	96.109	ENSCATG00000033169	ALYREF	97	96.109	Cercocebus_atys
ENSMUSG00000025134	Alyref	100	86.719	ENSCLAG00000015026	ALYREF	100	89.062	Chinchilla_lanigera
ENSMUSG00000025134	Alyref	100	96.109	ENSCSAG00000002216	ALYREF	97	96.109	Chlorocebus_sabaeus
ENSMUSG00000025134	Alyref	71	91.713	ENSCANG00000034056	ALYREF	95	84.409	Colobus_angolensis_palliatus
ENSMUSG00000025134	Alyref	100	97.255	ENSCGRG00001018191	-	100	97.255	Cricetulus_griseus_chok1gshd
ENSMUSG00000025134	Alyref	77	90.816	ENSCGRG00000015871	-	90	87.027	Cricetulus_griseus_crigri
ENSMUSG00000025134	Alyref	73	57.732	ENSCSEG00000015438	-	98	54.455	Cynoglossus_semilaevis
ENSMUSG00000025134	Alyref	69	92.135	ENSDNOG00000002563	ALYREF	97	80.870	Dasypus_novemcinctus
ENSMUSG00000025134	Alyref	89	82.533	ENSDORG00000025849	-	73	96.667	Dipodomys_ordii
ENSMUSG00000025134	Alyref	69	97.175	ENSETEG00000016596	ALYREF	100	94.350	Echinops_telfairi
ENSMUSG00000025134	Alyref	100	96.887	ENSEASG00005005824	ALYREF	95	96.887	Equus_asinus_asinus
ENSMUSG00000025134	Alyref	100	96.887	ENSECAG00000018754	ALYREF	95	96.887	Equus_caballus
ENSMUSG00000025134	Alyref	67	93.605	ENSEEUG00000010164	ALYREF	100	93.605	Erinaceus_europaeus
ENSMUSG00000025134	Alyref	100	96.887	ENSFCAG00000022549	ALYREF	98	96.887	Felis_catus
ENSMUSG00000025134	Alyref	80	85.784	ENSFDAG00000001213	ALYREF	93	88.293	Fukomys_damarensis
ENSMUSG00000025134	Alyref	100	84.496	ENSGALG00000007237	ALYREF	100	83.846	Gallus_gallus
ENSMUSG00000025134	Alyref	100	71.970	ENSGACG00000013328	ALYREF	100	72.727	Gasterosteus_aculeatus
ENSMUSG00000025134	Alyref	100	81.226	ENSGAGG00000008536	ALYREF	100	81.992	Gopherus_agassizii
ENSMUSG00000025134	Alyref	100	96.498	ENSGGOG00000013935	ALYREF	99	95.736	Gorilla_gorilla
ENSMUSG00000025134	Alyref	100	94.531	ENSHGLG00000008293	ALYREF	100	96.094	Heterocephalus_glaber_female
ENSMUSG00000025134	Alyref	80	80.000	ENSHGLG00100006949	ALYREF	85	88.500	Heterocephalus_glaber_male
ENSMUSG00000025134	Alyref	100	67.416	ENSHCOG00000015046	ALYREF	100	69.373	Hippocampus_comes
ENSMUSG00000025134	Alyref	100	96.484	ENSJJAG00000004134	-	100	96.484	Jaculus_jaculus
ENSMUSG00000025134	Alyref	100	71.863	ENSLACG00000005694	ALYREF	100	73.384	Latimeria_chalumnae
ENSMUSG00000025134	Alyref	73	97.861	ENSLAFG00000003083	ALYREF	100	97.861	Loxodonta_africana
ENSMUSG00000025134	Alyref	100	93.774	ENSMFAG00000001394	ALYREF	97	93.774	Macaca_fascicularis
ENSMUSG00000025134	Alyref	100	96.109	ENSMMUG00000012884	ALYREF	97	96.109	Macaca_mulatta
ENSMUSG00000025134	Alyref	100	96.109	ENSMNEG00000043666	ALYREF	97	96.109	Macaca_nemestrina
ENSMUSG00000025134	Alyref	73	86.772	ENSMLEG00000043353	ALYREF	87	84.127	Mandrillus_leucophaeus
ENSMUSG00000025134	Alyref	100	79.923	ENSMAUG00000020552	-	100	80.392	Mesocricetus_auratus
ENSMUSG00000025134	Alyref	100	96.875	ENSMICG00000017403	ALYREF	97	96.875	Microcebus_murinus
ENSMUSG00000025134	Alyref	100	85.496	ENSMOCG00000016792	-	100	85.271	Microtus_ochrogaster
ENSMUSG00000025134	Alyref	99	89.883	ENSMODG00000003030	ALYREF	84	92.607	Monodelphis_domestica
ENSMUSG00000025134	Alyref	100	70.182	ENSMALG00000019408	ALYREF	100	70.438	Monopterus_albus
ENSMUSG00000025134	Alyref	100	100.000	MGP_CAROLIEiJ_G0017529	Alyref	100	100.000	Mus_caroli
ENSMUSG00000025134	Alyref	100	74.118	MGP_CAROLIEiJ_G0014874	Alyref2	100	70.588	Mus_caroli
ENSMUSG00000025134	Alyref	82	69.048	MGP_PahariEiJ_G0027255	-	79	67.500	Mus_pahari
ENSMUSG00000025134	Alyref	82	69.048	MGP_PahariEiJ_G0027254	-	81	67.500	Mus_pahari
ENSMUSG00000025134	Alyref	100	100.000	MGP_PahariEiJ_G0018655	-	100	100.000	Mus_pahari
ENSMUSG00000025134	Alyref	74	100.000	MGP_PahariEiJ_G0018656	-	99	100.000	Mus_pahari
ENSMUSG00000025134	Alyref	69	58.850	MGP_SPRETEiJ_G0016590	-	54	77.049	Mus_spretus
ENSMUSG00000025134	Alyref	100	76.953	MGP_SPRETEiJ_G0015679	Alyref2	100	69.020	Mus_spretus
ENSMUSG00000025134	Alyref	100	100.000	MGP_SPRETEiJ_G0018373	Alyref	100	100.000	Mus_spretus
ENSMUSG00000025134	Alyref	98	56.371	ENSMLUG00000024471	-	82	53.846	Myotis_lucifugus
ENSMUSG00000025134	Alyref	98	64.659	ENSMLUG00000026271	-	79	61.847	Myotis_lucifugus
ENSMUSG00000025134	Alyref	98	63.600	ENSMLUG00000027352	-	77	61.600	Myotis_lucifugus
ENSMUSG00000025134	Alyref	98	64.173	ENSMLUG00000025677	-	77	64.173	Myotis_lucifugus
ENSMUSG00000025134	Alyref	98	56.031	ENSMLUG00000015043	-	98	54.651	Myotis_lucifugus
ENSMUSG00000025134	Alyref	82	84.038	ENSMLUG00000009555	-	66	92.655	Myotis_lucifugus
ENSMUSG00000025134	Alyref	100	53.558	ENSMLUG00000023213	-	100	50.566	Myotis_lucifugus
ENSMUSG00000025134	Alyref	98	64.143	ENSMLUG00000024976	-	79	59.363	Myotis_lucifugus
ENSMUSG00000025134	Alyref	84	58.716	ENSMLUG00000028343	-	85	64.607	Myotis_lucifugus
ENSMUSG00000025134	Alyref	98	62.800	ENSMLUG00000024447	-	76	60.400	Myotis_lucifugus
ENSMUSG00000025134	Alyref	98	58.431	ENSMLUG00000022869	-	81	56.250	Myotis_lucifugus
ENSMUSG00000025134	Alyref	98	64.981	ENSMLUG00000002626	-	98	64.981	Myotis_lucifugus
ENSMUSG00000025134	Alyref	98	70.800	ENSMLUG00000027516	-	78	69.600	Myotis_lucifugus
ENSMUSG00000025134	Alyref	98	62.598	ENSMLUG00000030407	-	77	61.811	Myotis_lucifugus
ENSMUSG00000025134	Alyref	100	96.498	ENSNLEG00000010313	ALYREF	97	96.498	Nomascus_leucogenys
ENSMUSG00000025134	Alyref	89	74.236	ENSMEUG00000002210	ALYREF	100	74.236	Notamacropus_eugenii
ENSMUSG00000025134	Alyref	52	94.737	ENSOPRG00000005551	-	52	94.737	Ochotona_princeps
ENSMUSG00000025134	Alyref	100	96.923	ENSODEG00000008359	ALYREF	100	96.923	Octodon_degus
ENSMUSG00000025134	Alyref	100	69.231	ENSORLG00000012331	ALYREF	100	71.587	Oryzias_latipes
ENSMUSG00000025134	Alyref	76	91.371	ENSOGAG00000012409	ALYREF	76	93.296	Otolemur_garnettii
ENSMUSG00000025134	Alyref	69	95.506	ENSOARG00000017932	ALYREF	67	97.753	Ovis_aries
ENSMUSG00000025134	Alyref	100	96.887	ENSPPRG00000010829	ALYREF	98	96.887	Panthera_pardus
ENSMUSG00000025134	Alyref	56	97.931	ENSPTIG00000006399	ALYREF	81	97.931	Panthera_tigris_altaica
ENSMUSG00000025134	Alyref	100	96.498	ENSPTRG00000009774	ALYREF	97	96.498	Pan_troglodytes
ENSMUSG00000025134	Alyref	100	96.109	ENSPANG00000019265	ALYREF	97	96.109	Papio_anubis
ENSMUSG00000025134	Alyref	51	88.722	ENSPSIG00000017541	ALYREF	98	90.977	Pelodiscus_sinensis
ENSMUSG00000025134	Alyref	100	96.109	ENSPPYG00000008749	ALYREF	97	96.109	Pongo_abelii
ENSMUSG00000025134	Alyref	100	96.875	ENSPCOG00000020874	ALYREF	97	96.875	Propithecus_coquereli
ENSMUSG00000025134	Alyref	100	80.469	ENSPVAG00000017866	ALYREF	100	80.469	Pteropus_vampyrus
ENSMUSG00000025134	Alyref	67	99.419	ENSRNOG00000036687	Alyref	91	99.419	Rattus_norvegicus
ENSMUSG00000025134	Alyref	71	91.713	ENSRBIG00000039651	ALYREF	74	93.370	Rhinopithecus_bieti
ENSMUSG00000025134	Alyref	90	85.776	ENSRROG00000045364	ALYREF	83	91.469	Rhinopithecus_roxellana
ENSMUSG00000025134	Alyref	75	89.005	ENSSHAG00000010459	ALYREF	96	94.054	Sarcophilus_harrisii
ENSMUSG00000025134	Alyref	100	52.708	ENSSDUG00000003992	-	100	53.069	Seriola_dumerili
ENSMUSG00000025134	Alyref	100	53.285	ENSSLDG00000005386	-	100	54.745	Seriola_lalandi_dorsalis
ENSMUSG00000025134	Alyref	100	82.759	ENSSPUG00000004600	ALYREF	100	81.609	Sphenodon_punctatus
ENSMUSG00000025134	Alyref	100	68.705	ENSSPAG00000011178	ALYREF	97	70.144	Stegastes_partitus
ENSMUSG00000025134	Alyref	100	97.266	ENSSSCG00000032655	ALYREF	100	97.266	Sus_scrofa
ENSMUSG00000025134	Alyref	51	92.424	ENSTGUG00000003513	ALYREF	100	90.370	Taeniopygia_guttata
ENSMUSG00000025134	Alyref	100	69.373	ENSTRUG00000008828	ALYREF	100	69.485	Takifugu_rubripes
ENSMUSG00000025134	Alyref	69	96.629	ENSTBEG00000005834	ALYREF	100	96.629	Tupaia_belangeri
ENSMUSG00000025134	Alyref	100	96.109	ENSTTRG00000012275	ALYREF	100	96.109	Tursiops_truncatus
ENSMUSG00000025134	Alyref	69	85.227	ENSUAMG00000016931	ALYREF	66	85.227	Ursus_americanus
ENSMUSG00000025134	Alyref	69	85.227	ENSUMAG00000016384	ALYREF	65	85.227	Ursus_maritimus
ENSMUSG00000025134	Alyref	100	75.391	ENSXETG00000005391	alyref	100	75.581	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003697	single-stranded DNA binding	10786854.	IDA	Function
GO:0003723	RNA binding	10786854.	IDA	Function
GO:0005634	nucleus	10786854.	TAS	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0051028	mRNA transport	-	IEA	Process