EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000153386	-	2884	NR_157578	-	- (aa)	-	-
ENSMUST00000139375	-	1274	-	-	- (aa)	-	-
ENSMUST00000138731	-	779	-	-	- (aa)	-	-
ENSMUST00000141702	-	873	-	-	- (aa)	-	-
ENSMUST00000026142	-	2821	-	ENSMUSP00000026142	775 (aa)	-	Q9QYH6
ENSMUST00000138146	-	1278	-	-	- (aa)	-	-
ENSMUST00000133982	-	943	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu04722	Neurotrophin signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000025151	Maged1	100	86.752	ENSG00000179222	MAGED1	100	86.752	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000785	chromatin	20300063.	IDA	Component
GO:0003713	transcription coactivator activity	11084035.	IDA	Function
GO:0005515	protein binding	11084035.11959851.15272023.19268530.20300063.	IPI	Function
GO:0005634	nucleus	20300063.	IDA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005886	plasma membrane	-	IEA	Component
GO:0006357	regulation of transcription by RNA polymerase II	11084035.	IDA	Process
GO:0016020	membrane	-	IEA	Component
GO:0032922	circadian regulation of gene expression	20300063.	IMP	Process
GO:0032991	protein-containing complex	-	ISO	Component
GO:0042752	regulation of circadian rhythm	20300063.	IMP	Process
GO:0042802	identical protein binding	-	ISO	Function
GO:0042981	regulation of apoptotic process	-	IEA	Process
GO:0043406	positive regulation of MAP kinase activity	19268530.	IMP	Process
GO:0045892	negative regulation of transcription, DNA-templated	19268530.	IMP	Process
GO:0045893	positive regulation of transcription, DNA-templated	19268530.	IMP	Process
GO:0048511	rhythmic process	-	IEA	Process
GO:0050680	negative regulation of epithelial cell proliferation	-	ISO	Process
GO:0090190	positive regulation of branching involved in ureteric bud morphogenesis	19268530.	IMP	Process
GO:2001235	positive regulation of apoptotic signaling pathway	19268530.	IMP	Process