EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000151200	-	1001	-	-	- (aa)	-	-
ENSMUST00000140804	-	878	-	-	- (aa)	-	-
ENSMUST00000026289	-	962	-	ENSMUSP00000026289	261 (aa)	-	Q99N15
ENSMUST00000112617	-	992	-	ENSMUSP00000108236	271 (aa)	-	A2AFQ2

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu00280	Valine, leucine and isoleucine degradation	KEGG
mmu01100	Metabolic pathways	KEGG
mmu05010	Alzheimer disease	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000025260	Hsd17b10	97	67.717	FBgn0021765	scu	100	75.397	Drosophila_melanogaster
ENSMUSG00000025260	Hsd17b10	100	87.739	ENSG00000072506	HSD17B10	100	87.739	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000049	tRNA binding	-	ISO	Function
GO:0001540	amyloid-beta binding	-	ISO	Function
GO:0003857	3-hydroxyacyl-CoA dehydrogenase activity	-	ISO	Function
GO:0004303	estradiol 17-beta-dehydrogenase activity	-	ISO	Function
GO:0005496	steroid binding	-	ISO	Function
GO:0005739	mitochondrion	14651853.18614015.	HDA	Component
GO:0005739	mitochondrion	14651853.24703694.	IDA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005743	mitochondrial inner membrane	12865426.	HDA	Component
GO:0005783	endoplasmic reticulum	15962010.	IDA	Component
GO:0007005	mitochondrion organization	-	ISO	Process
GO:0008033	tRNA processing	-	IEA	Process
GO:0016491	oxidoreductase activity	-	IEA	Function
GO:0018454	acetoacetyl-CoA reductase activity	-	ISO	Function
GO:0030283	testosterone dehydrogenase [NAD(P)] activity	-	ISO	Function
GO:0030331	estrogen receptor binding	-	ISO	Function
GO:0030678	mitochondrial ribonuclease P complex	-	ISO	Component
GO:0042645	mitochondrial nucleoid	24703694.	IDA	Component
GO:0042802	identical protein binding	-	ISO	Function
GO:0047015	3-hydroxy-2-methylbutyryl-CoA dehydrogenase activity	-	IEA	Function
GO:0051287	NAD binding	-	ISO	Function
GO:0051289	protein homotetramerization	-	ISO	Process
GO:0055114	oxidation-reduction process	-	IEA	Process
GO:0070901	mitochondrial tRNA methylation	-	ISO	Process
GO:0097745	mitochondrial tRNA 5'-end processing	-	ISO	Process
GO:1990180	mitochondrial tRNA 3'-end processing	-	ISO	Process