EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000025280 (Gene tree)
Gene ID: 218832
Gene Symbol: Polr3a
Alias: 9330175N20Rik|RPC1|RPC155
Full Name: polymerase (RNA) III (DNA directed) polypeptide A
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 38363 bases
Position: chr14:24448696-24487058
Accession: 2681836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000026322	RNA_pol_Rpb1_5	PF04998.17	1.1e-88	1	1
ENSMUSP00000026322	RNA_pol_Rpb1_4	PF05000.17	1.3e-31	1	1
ENSMUSP00000026322	RNA_pol_Rpb1_2	PF00623.20	2e-74	1	1
ENSMUSP00000026322	RNA_pol_Rpb1_3	PF04983.18	1.2e-41	1	1
ENSMUSP00000026322	RNA_pol_Rpb1_1	PF04997.12	3.5e-96	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000026322	-	4687	XM_006518819	ENSMUSP00000026322	1390 (aa)	XP_006518882	B2RXC6
ENSMUST00000225526	-	893	-	-	- (aa)	-	-
ENSMUST00000225014	-	775	-	-	- (aa)	-	-
ENSMUST00000223848	-	653	-	-	- (aa)	-	-
ENSMUST00000223718	-	4835	-	ENSMUSP00000153243	649 (aa)	-	Q7TSI4

Gene Model

Click here to download ENSMUSG00000025280's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03020	RNA polymerase	KEGG
mmu04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000025280's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000025280	Polr3a	93	37.236	ENSMUSG00000005198	Polr2a	67	38.079
ENSMUSG00000025280	Polr3a	70	32.623	ENSMUSG00000049553	Polr1a	63	31.876

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000025280	Polr3a	100	97.986	ENSG00000148606	POLR3A	100	97.986	Homo_sapiens
ENSMUSG00000025280	Polr3a	98	87.912	ENSAPOG00000022727	polr3a	99	86.179	Acanthochromis_polyacanthus
ENSMUSG00000025280	Polr3a	100	97.846	ENSAMEG00000017801	POLR3A	100	97.846	Ailuropoda_melanoleuca
ENSMUSG00000025280	Polr3a	98	88.697	ENSACIG00000024504	polr3a	97	90.517	Amphilophus_citrinellus
ENSMUSG00000025280	Polr3a	100	87.122	ENSAOCG00000003949	-	100	87.122	Amphiprion_ocellaris
ENSMUSG00000025280	Polr3a	100	90.432	ENSAOCG00000002071	polr3a	100	90.432	Amphiprion_ocellaris
ENSMUSG00000025280	Polr3a	100	90.288	ENSAPEG00000001966	-	100	90.288	Amphiprion_percula
ENSMUSG00000025280	Polr3a	100	90.432	ENSAPEG00000013351	polr3a	100	90.432	Amphiprion_percula
ENSMUSG00000025280	Polr3a	100	89.856	ENSATEG00000023277	polr3a	100	89.856	Anabas_testudineus
ENSMUSG00000025280	Polr3a	99	95.782	ENSAPLG00000015878	POLR3A	99	95.782	Anas_platyrhynchos
ENSMUSG00000025280	Polr3a	98	92.925	ENSACAG00000007985	POLR3A	99	93.277	Anolis_carolinensis
ENSMUSG00000025280	Polr3a	100	95.190	ENSANAG00000028922	POLR3A	96	99.363	Aotus_nancymaae
ENSMUSG00000025280	Polr3a	100	89.424	ENSACLG00000005914	polr3a	100	89.424	Astatotilapia_calliptera
ENSMUSG00000025280	Polr3a	100	87.410	ENSAMXG00000018852	polr3a	100	87.410	Astyanax_mexicanus
ENSMUSG00000025280	Polr3a	100	98.058	ENSBTAG00000013259	POLR3A	100	98.058	Bos_taurus
ENSMUSG00000025280	Polr3a	99	56.868	WBGene00004411	rpc-1	99	56.868	Caenorhabditis_elegans
ENSMUSG00000025280	Polr3a	100	97.986	ENSCJAG00000001015	POLR3A	100	97.986	Callithrix_jacchus
ENSMUSG00000025280	Polr3a	100	98.129	ENSCAFG00000015546	POLR3A	100	98.129	Canis_familiaris
ENSMUSG00000025280	Polr3a	100	98.129	ENSCAFG00020014711	POLR3A	100	98.129	Canis_lupus_dingo
ENSMUSG00000025280	Polr3a	100	97.626	ENSCHIG00000000352	POLR3A	100	97.626	Capra_hircus
ENSMUSG00000025280	Polr3a	100	97.554	ENSTSYG00000006671	POLR3A	100	97.554	Carlito_syrichta
ENSMUSG00000025280	Polr3a	99	97.236	ENSCAPG00000016031	POLR3A	100	97.236	Cavia_aperea
ENSMUSG00000025280	Polr3a	100	97.266	ENSCPOG00000022387	POLR3A	100	97.266	Cavia_porcellus
ENSMUSG00000025280	Polr3a	99	97.201	ENSCCAG00000032995	POLR3A	100	95.971	Cebus_capucinus
ENSMUSG00000025280	Polr3a	100	97.770	ENSCATG00000035842	POLR3A	100	97.770	Cercocebus_atys
ENSMUSG00000025280	Polr3a	100	97.122	ENSCLAG00000009629	POLR3A	100	97.122	Chinchilla_lanigera
ENSMUSG00000025280	Polr3a	100	97.914	ENSCSAG00000009292	POLR3A	100	97.914	Chlorocebus_sabaeus
ENSMUSG00000025280	Polr3a	85	82.517	ENSCHOG00000008368	POLR3A	100	82.517	Choloepus_hoffmanni
ENSMUSG00000025280	Polr3a	99	94.960	ENSCPBG00000002079	POLR3A	99	94.960	Chrysemys_picta_bellii
ENSMUSG00000025280	Polr3a	99	69.597	ENSCSAVG00000009925	-	99	69.597	Ciona_savignyi
ENSMUSG00000025280	Polr3a	86	96.535	ENSCANG00000041071	POLR3A	100	96.535	Colobus_angolensis_palliatus
ENSMUSG00000025280	Polr3a	99	98.600	ENSCGRG00001015599	-	92	99.462	Cricetulus_griseus_chok1gshd
ENSMUSG00000025280	Polr3a	99	98.600	ENSCGRG00000001019	Polr3a	100	98.925	Cricetulus_griseus_crigri
ENSMUSG00000025280	Polr3a	100	90.000	ENSCSEG00000016653	polr3a	100	90.000	Cynoglossus_semilaevis
ENSMUSG00000025280	Polr3a	100	89.496	ENSCVAG00000023049	polr3a	100	89.496	Cyprinodon_variegatus
ENSMUSG00000025280	Polr3a	99	90.425	ENSDARG00000102569	polr3a	99	90.425	Danio_rerio
ENSMUSG00000025280	Polr3a	100	97.338	ENSDNOG00000010194	POLR3A	100	97.338	Dasypus_novemcinctus
ENSMUSG00000025280	Polr3a	100	98.201	ENSDORG00000000184	Polr3a	100	98.201	Dipodomys_ordii
ENSMUSG00000025280	Polr3a	98	58.842	FBgn0030687	CG17209	99	57.236	Drosophila_melanogaster
ENSMUSG00000025280	Polr3a	88	97.166	ENSETEG00000007477	POLR3A	89	97.166	Echinops_telfairi
ENSMUSG00000025280	Polr3a	83	73.205	ENSEBUG00000013761	polr3a	98	76.698	Eptatretus_burgeri
ENSMUSG00000025280	Polr3a	100	98.273	ENSEASG00005023053	POLR3A	100	98.273	Equus_asinus_asinus
ENSMUSG00000025280	Polr3a	99	97.045	ENSECAG00000019416	POLR3A	100	97.897	Equus_caballus
ENSMUSG00000025280	Polr3a	99	92.846	ENSEEUG00000001774	POLR3A	100	92.990	Erinaceus_europaeus
ENSMUSG00000025280	Polr3a	100	88.011	ENSELUG00000014016	polr3a	100	88.011	Esox_lucius
ENSMUSG00000025280	Polr3a	100	98.345	ENSFCAG00000000843	POLR3A	100	98.345	Felis_catus
ENSMUSG00000025280	Polr3a	100	95.615	ENSFALG00000006913	POLR3A	100	95.615	Ficedula_albicollis
ENSMUSG00000025280	Polr3a	100	97.338	ENSFDAG00000007813	POLR3A	100	97.338	Fukomys_damarensis
ENSMUSG00000025280	Polr3a	95	89.868	ENSFHEG00000011922	polr3a	99	89.868	Fundulus_heteroclitus
ENSMUSG00000025280	Polr3a	100	84.735	ENSGMOG00000000291	polr3a	99	84.735	Gadus_morhua
ENSMUSG00000025280	Polr3a	100	95.899	ENSGALG00000004947	POLR3A	100	95.899	Gallus_gallus
ENSMUSG00000025280	Polr3a	100	89.568	ENSGAFG00000005112	polr3a	100	89.568	Gambusia_affinis
ENSMUSG00000025280	Polr3a	100	89.281	ENSGACG00000002304	polr3a	100	89.281	Gasterosteus_aculeatus
ENSMUSG00000025280	Polr3a	95	95.231	ENSGAGG00000010386	POLR3A	98	95.231	Gopherus_agassizii
ENSMUSG00000025280	Polr3a	99	96.893	ENSGGOG00000027729	POLR3A	100	98.043	Gorilla_gorilla
ENSMUSG00000025280	Polr3a	100	89.424	ENSHBUG00000018098	polr3a	100	89.424	Haplochromis_burtoni
ENSMUSG00000025280	Polr3a	100	97.482	ENSHGLG00000017899	POLR3A	100	97.482	Heterocephalus_glaber_female
ENSMUSG00000025280	Polr3a	100	97.482	ENSHGLG00100008483	POLR3A	100	97.482	Heterocephalus_glaber_male
ENSMUSG00000025280	Polr3a	100	88.993	ENSHCOG00000001075	polr3a	100	88.993	Hippocampus_comes
ENSMUSG00000025280	Polr3a	98	86.991	ENSIPUG00000001706	polr3a	96	86.991	Ictalurus_punctatus
ENSMUSG00000025280	Polr3a	100	98.201	ENSSTOG00000012983	POLR3A	100	98.201	Ictidomys_tridecemlineatus
ENSMUSG00000025280	Polr3a	99	88.043	ENSJJAG00000016217	-	99	88.043	Jaculus_jaculus
ENSMUSG00000025280	Polr3a	100	89.856	ENSKMAG00000015290	polr3a	100	89.856	Kryptolebias_marmoratus
ENSMUSG00000025280	Polr3a	99	88.841	ENSLBEG00000017214	polr3a	99	88.841	Labrus_bergylta
ENSMUSG00000025280	Polr3a	97	89.740	ENSLACG00000018557	POLR3A	99	89.740	Latimeria_chalumnae
ENSMUSG00000025280	Polr3a	100	91.816	ENSLOCG00000004942	polr3a	100	91.816	Lepisosteus_oculatus
ENSMUSG00000025280	Polr3a	100	96.262	ENSLAFG00000016719	POLR3A	100	96.262	Loxodonta_africana
ENSMUSG00000025280	Polr3a	100	97.842	ENSMFAG00000032218	POLR3A	100	97.842	Macaca_fascicularis
ENSMUSG00000025280	Polr3a	100	97.842	ENSMMUG00000005514	POLR3A	100	97.842	Macaca_mulatta
ENSMUSG00000025280	Polr3a	96	96.945	ENSMNEG00000035163	POLR3A	99	97.687	Macaca_nemestrina
ENSMUSG00000025280	Polr3a	100	93.247	ENSMLEG00000030014	POLR3A	98	98.734	Mandrillus_leucophaeus
ENSMUSG00000025280	Polr3a	100	89.712	ENSMAMG00000017497	polr3a	100	89.712	Mastacembelus_armatus
ENSMUSG00000025280	Polr3a	100	89.424	ENSMZEG00005000576	polr3a	100	89.424	Maylandia_zebra
ENSMUSG00000025280	Polr3a	100	77.486	ENSMGAG00000005713	-	100	77.486	Meleagris_gallopavo
ENSMUSG00000025280	Polr3a	99	98.756	ENSMAUG00000016247	Polr3a	100	97.122	Mesocricetus_auratus
ENSMUSG00000025280	Polr3a	100	98.201	ENSMICG00000005937	POLR3A	100	98.262	Microcebus_murinus
ENSMUSG00000025280	Polr3a	100	99.137	ENSMOCG00000012185	Polr3a	100	99.137	Microtus_ochrogaster
ENSMUSG00000025280	Polr3a	100	89.065	ENSMMOG00000013822	polr3a	100	89.065	Mola_mola
ENSMUSG00000025280	Polr3a	100	96.835	ENSMODG00000001036	POLR3A	100	96.835	Monodelphis_domestica
ENSMUSG00000025280	Polr3a	100	89.209	ENSMALG00000001249	polr3a	100	89.209	Monopterus_albus
ENSMUSG00000025280	Polr3a	100	99.856	MGP_CAROLIEiJ_G0019016	Polr3a	100	99.856	Mus_caroli
ENSMUSG00000025280	Polr3a	100	99.712	MGP_PahariEiJ_G0030029	Polr3a	100	99.712	Mus_pahari
ENSMUSG00000025280	Polr3a	100	97.266	MGP_SPRETEiJ_G0019894	Polr3a	100	97.266	Mus_spretus
ENSMUSG00000025280	Polr3a	100	97.432	ENSMPUG00000003790	POLR3A	100	97.432	Mustela_putorius_furo
ENSMUSG00000025280	Polr3a	100	97.122	ENSMLUG00000011522	POLR3A	100	97.122	Myotis_lucifugus
ENSMUSG00000025280	Polr3a	100	96.691	ENSNGAG00000015863	Polr3a	100	96.691	Nannospalax_galili
ENSMUSG00000025280	Polr3a	100	88.058	ENSNBRG00000014262	polr3a	100	88.058	Neolamprologus_brichardi
ENSMUSG00000025280	Polr3a	88	92.208	ENSNLEG00000010501	POLR3A	92	92.208	Nomascus_leucogenys
ENSMUSG00000025280	Polr3a	99	84.000	ENSMEUG00000012446	POLR3A	100	84.000	Notamacropus_eugenii
ENSMUSG00000025280	Polr3a	100	92.662	ENSOPRG00000001880	-	100	92.662	Ochotona_princeps
ENSMUSG00000025280	Polr3a	100	95.755	ENSODEG00000015146	POLR3A	100	95.755	Octodon_degus
ENSMUSG00000025280	Polr3a	100	89.856	ENSONIG00000016129	polr3a	100	89.856	Oreochromis_niloticus
ENSMUSG00000025280	Polr3a	98	96.129	ENSOANG00000007013	POLR3A	100	96.129	Ornithorhynchus_anatinus
ENSMUSG00000025280	Polr3a	100	97.698	ENSOCUG00000012450	POLR3A	100	97.698	Oryctolagus_cuniculus
ENSMUSG00000025280	Polr3a	100	90.000	ENSORLG00000008958	polr3a	100	90.000	Oryzias_latipes
ENSMUSG00000025280	Polr3a	100	87.770	ENSORLG00020007525	polr3a	98	90.313	Oryzias_latipes_hni
ENSMUSG00000025280	Polr3a	100	89.856	ENSORLG00015006633	polr3a	100	89.856	Oryzias_latipes_hsok
ENSMUSG00000025280	Polr3a	100	88.921	ENSOMEG00000012865	polr3a	100	88.921	Oryzias_melastigma
ENSMUSG00000025280	Polr3a	100	97.914	ENSOGAG00000010995	POLR3A	100	97.914	Otolemur_garnettii
ENSMUSG00000025280	Polr3a	100	97.629	ENSOARG00000009656	POLR3A	100	97.629	Ovis_aries
ENSMUSG00000025280	Polr3a	98	97.013	ENSPPAG00000041726	-	99	97.013	Pan_paniscus
ENSMUSG00000025280	Polr3a	100	98.345	ENSPPRG00000002128	POLR3A	100	98.345	Panthera_pardus
ENSMUSG00000025280	Polr3a	100	98.345	ENSPTIG00000020916	POLR3A	100	98.345	Panthera_tigris_altaica
ENSMUSG00000025280	Polr3a	100	97.914	ENSPTRG00000002664	POLR3A	100	97.914	Pan_troglodytes
ENSMUSG00000025280	Polr3a	100	97.770	ENSPANG00000022508	POLR3A	100	97.770	Papio_anubis
ENSMUSG00000025280	Polr3a	100	91.511	ENSPKIG00000008140	polr3a	100	91.511	Paramormyrops_kingsleyae
ENSMUSG00000025280	Polr3a	98	94.960	ENSPSIG00000002092	POLR3A	100	94.960	Pelodiscus_sinensis
ENSMUSG00000025280	Polr3a	95	81.331	ENSPMGG00000010601	polr3a	97	81.331	Periophthalmus_magnuspinnatus
ENSMUSG00000025280	Polr3a	100	99.065	ENSPEMG00000006768	Polr3a	100	99.065	Peromyscus_maniculatus_bairdii
ENSMUSG00000025280	Polr3a	100	96.691	ENSPCIG00000015842	POLR3A	100	96.691	Phascolarctos_cinereus
ENSMUSG00000025280	Polr3a	54	90.872	ENSPFOG00000006458	polr3a	100	90.872	Poecilia_formosa
ENSMUSG00000025280	Polr3a	98	88.836	ENSPFOG00000022090	POLR3A	99	88.836	Poecilia_formosa
ENSMUSG00000025280	Polr3a	98	88.836	ENSPFOG00000021951	polr3a	100	88.836	Poecilia_formosa
ENSMUSG00000025280	Polr3a	98	88.836	ENSPLAG00000008311	-	96	88.836	Poecilia_latipinna
ENSMUSG00000025280	Polr3a	100	89.784	ENSPLAG00000000997	polr3a	100	89.784	Poecilia_latipinna
ENSMUSG00000025280	Polr3a	100	89.712	ENSPMEG00000006821	polr3a	100	89.712	Poecilia_mexicana
ENSMUSG00000025280	Polr3a	73	88.470	ENSPMEG00000021564	-	99	88.470	Poecilia_mexicana
ENSMUSG00000025280	Polr3a	100	89.712	ENSPREG00000002385	polr3a	100	89.712	Poecilia_reticulata
ENSMUSG00000025280	Polr3a	93	97.602	ENSPPYG00000002305	POLR3A	99	97.602	Pongo_abelii
ENSMUSG00000025280	Polr3a	84	85.115	ENSPCAG00000005690	POLR3A	87	85.115	Procavia_capensis
ENSMUSG00000025280	Polr3a	100	97.842	ENSPCOG00000028311	POLR3A	100	97.842	Propithecus_coquereli
ENSMUSG00000025280	Polr3a	100	96.763	ENSPVAG00000015553	POLR3A	100	96.763	Pteropus_vampyrus
ENSMUSG00000025280	Polr3a	100	89.424	ENSPNYG00000020987	polr3a	100	89.424	Pundamilia_nyererei
ENSMUSG00000025280	Polr3a	99	86.537	ENSPNAG00000006629	polr3a	99	86.537	Pygocentrus_nattereri
ENSMUSG00000025280	Polr3a	100	99.353	ENSRNOG00000010008	Polr3a	100	99.353	Rattus_norvegicus
ENSMUSG00000025280	Polr3a	100	93.453	ENSRBIG00000034967	POLR3A	98	98.734	Rhinopithecus_bieti
ENSMUSG00000025280	Polr3a	100	97.698	ENSRROG00000025527	POLR3A	100	97.698	Rhinopithecus_roxellana
ENSMUSG00000025280	Polr3a	99	50.345	YOR116C	RPO31	99	50.345	Saccharomyces_cerevisiae
ENSMUSG00000025280	Polr3a	100	98.058	ENSSBOG00000022199	POLR3A	100	98.058	Saimiri_boliviensis_boliviensis
ENSMUSG00000025280	Polr3a	100	96.547	ENSSHAG00000007588	POLR3A	94	96.547	Sarcophilus_harrisii
ENSMUSG00000025280	Polr3a	100	91.727	ENSSFOG00015014357	polr3a	100	91.727	Scleropages_formosus
ENSMUSG00000025280	Polr3a	100	89.496	ENSSMAG00000001780	polr3a	100	89.496	Scophthalmus_maximus
ENSMUSG00000025280	Polr3a	100	90.144	ENSSDUG00000019840	polr3a	100	90.144	Seriola_dumerili
ENSMUSG00000025280	Polr3a	100	90.144	ENSSLDG00000023908	polr3a	100	90.144	Seriola_lalandi_dorsalis
ENSMUSG00000025280	Polr3a	69	98.746	ENSSARG00000009916	POLR3A	89	98.746	Sorex_araneus
ENSMUSG00000025280	Polr3a	100	93.237	ENSSPUG00000013209	POLR3A	100	93.237	Sphenodon_punctatus
ENSMUSG00000025280	Polr3a	100	90.288	ENSSPAG00000017712	polr3a	100	90.288	Stegastes_partitus
ENSMUSG00000025280	Polr3a	100	97.914	ENSSSCG00000010327	POLR3A	100	97.914	Sus_scrofa
ENSMUSG00000025280	Polr3a	100	95.468	ENSTGUG00000006423	-	100	95.468	Taeniopygia_guttata
ENSMUSG00000025280	Polr3a	100	89.209	ENSTRUG00000013488	polr3a	100	89.209	Takifugu_rubripes
ENSMUSG00000025280	Polr3a	100	89.440	ENSTNIG00000013151	polr3a	100	89.440	Tetraodon_nigroviridis
ENSMUSG00000025280	Polr3a	71	96.809	ENSTBEG00000015288	POLR3A	75	96.809	Tupaia_belangeri
ENSMUSG00000025280	Polr3a	100	97.381	ENSTTRG00000007817	POLR3A	100	98.555	Tursiops_truncatus
ENSMUSG00000025280	Polr3a	99	97.512	ENSUAMG00000011283	POLR3A	100	95.755	Ursus_americanus
ENSMUSG00000025280	Polr3a	100	98.129	ENSUMAG00000013913	POLR3A	100	98.129	Ursus_maritimus
ENSMUSG00000025280	Polr3a	97	97.293	ENSVPAG00000003285	POLR3A	100	89.891	Vicugna_pacos
ENSMUSG00000025280	Polr3a	100	98.058	ENSVVUG00000025523	POLR3A	100	98.058	Vulpes_vulpes
ENSMUSG00000025280	Polr3a	99	90.187	ENSXETG00000018101	polr3a	100	92.314	Xenopus_tropicalis
ENSMUSG00000025280	Polr3a	98	88.365	ENSXCOG00000006098	polr3a	98	88.365	Xiphophorus_couchianus
ENSMUSG00000025280	Polr3a	100	89.568	ENSXMAG00000015213	polr3a	100	89.568	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001056	RNA polymerase III activity	21873635.	IBA	Function
GO:0003682	chromatin binding	22287103.	IDA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	21873635.	IBA	Function
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005666	RNA polymerase III complex	21873635.	IBA	Component
GO:0005666	RNA polymerase III complex	-	ISO	Component
GO:0032728	positive regulation of interferon-beta production	-	ISO	Process
GO:0045087	innate immune response	-	ISO	Process