EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000025289 (Gene tree)
Gene ID: 53381
Gene Symbol: Prdx4
Alias: AOE372|Prx IV|Prx-iv|Prx4
Full Name: peroxiredoxin 4
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 16837
Position: chrX: 155323918-155340754
Accession: 1859815
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000123915	-	1025	-	-	- (aa)	-	-
ENSMUST00000130349	-	935	-	ENSMUSP00000122997	229 (aa)	-	B1AZS9
ENSMUST00000026328	-	990	XM_011247844	ENSMUSP00000026328	274 (aa)	XP_011246146	O08807

Gene Model

Click here to download ENSMUSG00000025289's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000025289's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000025289	Prdx4	69	63.291	WBGene00011110	prdx-3	93	56.872	Caenorhabditis_elegans
ENSMUSG00000025289	Prdx4	71	59.259	YML028W	TSA1	98	55.959	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004601	peroxidase activity	-	IEA	Function
GO:0005515	protein binding	24462249.	IPI	Function
GO:0005615	extracellular space	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	11229364.	IDA	Component
GO:0005739	mitochondrion	14651853.	HDA	Component
GO:0005783	endoplasmic reticulum	21873635.	IBA	Component
GO:0005783	endoplasmic reticulum	21835919.	IDA	Component
GO:0005790	smooth endoplasmic reticulum	-	ISO	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005829	cytosol	21835919.	IDA	Component
GO:0006979	response to oxidative stress	21873635.	IBA	Process
GO:0007283	spermatogenesis	19105792.	IMP	Process
GO:0008379	thioredoxin peroxidase activity	21873635.	IBA	Function
GO:0008584	male gonad development	19105792.	IMP	Process
GO:0016209	antioxidant activity	-	IEA	Function
GO:0016491	oxidoreductase activity	-	IEA	Function
GO:0019471	4-hydroxyproline metabolic process	22981861.	IGI	Process
GO:0022417	protein maturation by protein folding	22981861.	IGI	Process
GO:0030198	extracellular matrix organization	22981861.	IGI	Process
GO:0042744	hydrogen peroxide catabolic process	21873635.	IBA	Process
GO:0042803	protein homodimerization activity	21835919.	IDA	Function
GO:0045454	cell redox homeostasis	21873635.	IBA	Process
GO:0045454	cell redox homeostasis	23589496.	IGI	Process
GO:0051920	peroxiredoxin activity	-	IEA	Function
GO:0055114	oxidation-reduction process	19105792.	IMP	Process
GO:0072593	reactive oxygen species metabolic process	11229364.	IDA	Process
GO:2000255	negative regulation of male germ cell proliferation	19105792.	IMP	Process