EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000025337 (Gene tree)
Gene ID: 66711
Gene Symbol: Sbds
Alias: 4733401P19Rik|Shwachman-Bodian-Diamond syndrome homolog (human)
Full Name: SBDS ribosome maturation factor
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 9800 bases
Position: chr5:130245731-130255530
Accession: 1913961
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000026387	SBDS	PF01172.18	7.8e-33	1	1
ENSMUSP00000115494	SBDS	PF01172.18	1.9e-18	1	1
ENSMUSP00000026387	SBDS_C	PF09377.10	6.5e-39	1	1
ENSMUSP00000115494	SBDS_C	PF09377.10	1.2e-31	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000139211	-	815	-	ENSMUSP00000117348	43 (aa)	-	D6REV5
ENSMUST00000125625	-	915	-	ENSMUSP00000115494	173 (aa)	-	F6TN03
ENSMUST00000026387	-	1548	XM_006504490	ENSMUSP00000026387	250 (aa)	XP_006504553	P70122
ENSMUST00000201598	-	360	-	-	- (aa)	-	-
ENSMUST00000200815	-	435	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000025337's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000025337's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000025337	Sbds	100	97.674	ENSG00000126524	SBDS	100	97.200	Homo_sapiens
ENSMUSG00000025337	Sbds	98	92.857	ENSAPOG00000014285	sbds	100	84.739	Acanthochromis_polyacanthus
ENSMUSG00000025337	Sbds	100	97.674	ENSAMEG00000018167	SBDS	100	96.800	Ailuropoda_melanoleuca
ENSMUSG00000025337	Sbds	98	92.857	ENSACIG00000007308	sbds	100	84.524	Amphilophus_citrinellus
ENSMUSG00000025337	Sbds	98	92.857	ENSAOCG00000016770	sbds	100	84.739	Amphiprion_ocellaris
ENSMUSG00000025337	Sbds	98	92.857	ENSAPEG00000015897	sbds	100	85.141	Amphiprion_percula
ENSMUSG00000025337	Sbds	98	90.476	ENSATEG00000006901	sbds	100	84.337	Anabas_testudineus
ENSMUSG00000025337	Sbds	96	96.988	ENSANAG00000037501	-	100	96.618	Aotus_nancymaae
ENSMUSG00000025337	Sbds	95	93.293	ENSANAG00000024342	-	97	90.043	Aotus_nancymaae
ENSMUSG00000025337	Sbds	98	92.857	ENSACLG00000018750	sbds	100	85.944	Astatotilapia_calliptera
ENSMUSG00000025337	Sbds	98	90.476	ENSAMXG00000005361	sbds	100	85.200	Astyanax_mexicanus
ENSMUSG00000025337	Sbds	100	97.674	ENSBTAG00000004051	SBDS	100	97.600	Bos_taurus
ENSMUSG00000025337	Sbds	93	80.000	WBGene00021063	sbds-1	97	58.130	Caenorhabditis_elegans
ENSMUSG00000025337	Sbds	100	97.674	ENSCJAG00000041007	SBDS	100	96.800	Callithrix_jacchus
ENSMUSG00000025337	Sbds	100	94.048	ENSCAFG00000010797	SBDS	100	94.048	Canis_familiaris
ENSMUSG00000025337	Sbds	100	97.674	ENSCAFG00020005357	SBDS	100	96.400	Canis_lupus_dingo
ENSMUSG00000025337	Sbds	100	97.674	ENSCHIG00000026854	SBDS	100	97.600	Capra_hircus
ENSMUSG00000025337	Sbds	100	97.674	ENSTSYG00000033822	SBDS	100	97.200	Carlito_syrichta
ENSMUSG00000025337	Sbds	71	97.561	ENSCAPG00000006634	SBDS	100	97.561	Cavia_aperea
ENSMUSG00000025337	Sbds	100	98.000	ENSCPOG00000036143	SBDS	100	98.000	Cavia_porcellus
ENSMUSG00000025337	Sbds	100	97.674	ENSCCAG00000020671	SBDS	100	96.800	Cebus_capucinus
ENSMUSG00000025337	Sbds	100	97.674	ENSCATG00000039026	SBDS	100	97.200	Cercocebus_atys
ENSMUSG00000025337	Sbds	95	78.049	ENSCLAG00000002113	-	99	70.968	Chinchilla_lanigera
ENSMUSG00000025337	Sbds	100	97.674	ENSCLAG00000005721	-	100	97.600	Chinchilla_lanigera
ENSMUSG00000025337	Sbds	100	97.674	ENSCSAG00000018275	SBDS	100	97.200	Chlorocebus_sabaeus
ENSMUSG00000025337	Sbds	100	97.674	ENSCHOG00000003795	SBDS	100	92.800	Choloepus_hoffmanni
ENSMUSG00000025337	Sbds	100	88.800	ENSCPBG00000014893	SBDS	100	88.800	Chrysemys_picta_bellii
ENSMUSG00000025337	Sbds	98	80.952	ENSCSAVG00000011811	-	100	66.800	Ciona_savignyi
ENSMUSG00000025337	Sbds	100	97.674	ENSCANG00000032368	SBDS	100	96.800	Colobus_angolensis_palliatus
ENSMUSG00000025337	Sbds	100	97.674	ENSCGRG00001000088	-	82	98.795	Cricetulus_griseus_chok1gshd
ENSMUSG00000025337	Sbds	71	98.374	ENSCGRG00001019886	Sbds	100	97.561	Cricetulus_griseus_chok1gshd
ENSMUSG00000025337	Sbds	100	98.844	ENSCGRG00000009211	Sbds	100	98.068	Cricetulus_griseus_crigri
ENSMUSG00000025337	Sbds	98	92.857	ENSCSEG00000005798	sbds	100	83.133	Cynoglossus_semilaevis
ENSMUSG00000025337	Sbds	98	95.238	ENSCVAG00000001053	sbds	100	83.534	Cyprinodon_variegatus
ENSMUSG00000025337	Sbds	98	92.857	ENSDARG00000027803	sbds	100	84.400	Danio_rerio
ENSMUSG00000025337	Sbds	100	97.674	ENSDNOG00000041174	SBDS	100	96.800	Dasypus_novemcinctus
ENSMUSG00000025337	Sbds	100	98.000	ENSDORG00000026218	Sbds	100	98.000	Dipodomys_ordii
ENSMUSG00000025337	Sbds	91	87.179	FBgn0035714	CG8549	99	59.438	Drosophila_melanogaster
ENSMUSG00000025337	Sbds	99	63.158	ENSEBUG00000015780	sbds	100	59.657	Eptatretus_burgeri
ENSMUSG00000025337	Sbds	100	97.674	ENSEASG00005008821	SBDS	100	97.600	Equus_asinus_asinus
ENSMUSG00000025337	Sbds	100	97.674	ENSECAG00000008202	SBDS	100	97.600	Equus_caballus
ENSMUSG00000025337	Sbds	100	95.349	ENSEEUG00000004768	SBDS	100	74.519	Erinaceus_europaeus
ENSMUSG00000025337	Sbds	98	92.857	ENSELUG00000008382	sbds	100	82.400	Esox_lucius
ENSMUSG00000025337	Sbds	100	97.674	ENSFCAG00000022142	SBDS	100	97.200	Felis_catus
ENSMUSG00000025337	Sbds	100	88.800	ENSFALG00000013808	SBDS	100	88.800	Ficedula_albicollis
ENSMUSG00000025337	Sbds	100	98.000	ENSFDAG00000018947	-	100	98.000	Fukomys_damarensis
ENSMUSG00000025337	Sbds	98	90.476	ENSFHEG00000000708	sbds	100	80.321	Fundulus_heteroclitus
ENSMUSG00000025337	Sbds	98	95.238	ENSGMOG00000018356	sbds	99	84.800	Gadus_morhua
ENSMUSG00000025337	Sbds	100	88.400	ENSGALG00000027989	SBDS	100	88.400	Gallus_gallus
ENSMUSG00000025337	Sbds	92	80.435	ENSGAFG00000014204	sbds	100	80.435	Gambusia_affinis
ENSMUSG00000025337	Sbds	98	92.857	ENSGACG00000012697	sbds	100	83.936	Gasterosteus_aculeatus
ENSMUSG00000025337	Sbds	96	89.157	ENSGAGG00000022402	SBDS	100	89.252	Gopherus_agassizii
ENSMUSG00000025337	Sbds	79	97.059	ENSGGOG00000040023	-	92	76.763	Gorilla_gorilla
ENSMUSG00000025337	Sbds	100	97.674	ENSGGOG00000001472	-	87	97.701	Gorilla_gorilla
ENSMUSG00000025337	Sbds	98	92.857	ENSHBUG00000002660	sbds	100	85.944	Haplochromis_burtoni
ENSMUSG00000025337	Sbds	100	97.674	ENSHGLG00000009671	SBDS	100	96.400	Heterocephalus_glaber_female
ENSMUSG00000025337	Sbds	100	97.674	ENSHGLG00100011332	SBDS	100	96.400	Heterocephalus_glaber_male
ENSMUSG00000025337	Sbds	98	90.476	ENSHCOG00000018606	sbds	100	81.526	Hippocampus_comes
ENSMUSG00000025337	Sbds	98	95.238	ENSIPUG00000006536	sbds	100	86.000	Ictalurus_punctatus
ENSMUSG00000025337	Sbds	100	97.674	ENSSTOG00000022203	-	90	97.647	Ictidomys_tridecemlineatus
ENSMUSG00000025337	Sbds	100	72.093	ENSJJAG00000013791	-	100	87.619	Jaculus_jaculus
ENSMUSG00000025337	Sbds	86	97.297	ENSJJAG00000003934	-	100	69.565	Jaculus_jaculus
ENSMUSG00000025337	Sbds	100	94.000	ENSJJAG00000012033	-	100	94.000	Jaculus_jaculus
ENSMUSG00000025337	Sbds	98	90.476	ENSKMAG00000018542	sbds	100	84.337	Kryptolebias_marmoratus
ENSMUSG00000025337	Sbds	98	90.476	ENSLBEG00000016687	sbds	100	82.731	Labrus_bergylta
ENSMUSG00000025337	Sbds	98	90.476	ENSLACG00000018916	SBDS	100	70.472	Latimeria_chalumnae
ENSMUSG00000025337	Sbds	98	92.857	ENSLOCG00000004073	sbds	100	87.200	Lepisosteus_oculatus
ENSMUSG00000025337	Sbds	100	97.674	ENSLAFG00000008763	SBDS	100	95.600	Loxodonta_africana
ENSMUSG00000025337	Sbds	100	97.674	ENSMFAG00000032620	SBDS	100	97.200	Macaca_fascicularis
ENSMUSG00000025337	Sbds	100	97.674	ENSMMUG00000045653	SBDS	100	97.200	Macaca_mulatta
ENSMUSG00000025337	Sbds	100	97.674	ENSMNEG00000031523	SBDS	100	97.200	Macaca_nemestrina
ENSMUSG00000025337	Sbds	91	97.436	ENSMLEG00000036826	SBDS	100	74.016	Mandrillus_leucophaeus
ENSMUSG00000025337	Sbds	98	92.857	ENSMAMG00000016062	sbds	100	84.739	Mastacembelus_armatus
ENSMUSG00000025337	Sbds	98	92.857	ENSMZEG00005024385	sbds	100	85.944	Maylandia_zebra
ENSMUSG00000025337	Sbds	100	88.400	ENSMGAG00000002119	SBDS	100	88.400	Meleagris_gallopavo
ENSMUSG00000025337	Sbds	100	97.674	ENSMAUG00000004862	-	91	85.437	Mesocricetus_auratus
ENSMUSG00000025337	Sbds	100	93.023	ENSMAUG00000022214	-	100	77.510	Mesocricetus_auratus
ENSMUSG00000025337	Sbds	100	97.674	ENSMICG00000014366	SBDS	100	97.600	Microcebus_murinus
ENSMUSG00000025337	Sbds	100	98.800	ENSMOCG00000011739	Sbds	100	98.800	Microtus_ochrogaster
ENSMUSG00000025337	Sbds	98	92.857	ENSMMOG00000005061	sbds	100	74.400	Mola_mola
ENSMUSG00000025337	Sbds	100	97.674	ENSMODG00000006644	SBDS	100	95.600	Monodelphis_domestica
ENSMUSG00000025337	Sbds	98	92.857	ENSMALG00000010219	sbds	100	84.739	Monopterus_albus
ENSMUSG00000025337	Sbds	100	100.000	MGP_CAROLIEiJ_G0027800	Sbds	100	100.000	Mus_caroli
ENSMUSG00000025337	Sbds	100	100.000	MGP_PahariEiJ_G0024384	Sbds	100	100.000	Mus_pahari
ENSMUSG00000025337	Sbds	100	100.000	MGP_SPRETEiJ_G0028798	Sbds	100	100.000	Mus_spretus
ENSMUSG00000025337	Sbds	73	93.701	ENSMPUG00000016192	SBDS	97	94.048	Mustela_putorius_furo
ENSMUSG00000025337	Sbds	82	95.745	ENSMLUG00000013575	SBDS	100	94.505	Myotis_lucifugus
ENSMUSG00000025337	Sbds	100	98.800	ENSNGAG00000012093	Sbds	100	98.800	Nannospalax_galili
ENSMUSG00000025337	Sbds	98	92.857	ENSNBRG00000017027	sbds	100	85.944	Neolamprologus_brichardi
ENSMUSG00000025337	Sbds	100	97.674	ENSNLEG00000013288	SBDS	100	97.200	Nomascus_leucogenys
ENSMUSG00000025337	Sbds	100	96.400	ENSOPRG00000008721	SBDS	100	96.400	Ochotona_princeps
ENSMUSG00000025337	Sbds	100	97.674	ENSODEG00000015687	-	83	98.824	Octodon_degus
ENSMUSG00000025337	Sbds	100	87.600	ENSODEG00000019253	-	84	87.600	Octodon_degus
ENSMUSG00000025337	Sbds	99	72.691	ENSODEG00000000137	-	85	76.000	Octodon_degus
ENSMUSG00000025337	Sbds	100	81.395	ENSODEG00000001116	-	99	76.707	Octodon_degus
ENSMUSG00000025337	Sbds	98	92.857	ENSONIG00000005874	sbds	100	85.141	Oreochromis_niloticus
ENSMUSG00000025337	Sbds	96	91.566	ENSOANG00000007674	-	100	91.304	Ornithorhynchus_anatinus
ENSMUSG00000025337	Sbds	100	97.674	ENSOCUG00000003170	SBDS	100	96.400	Oryctolagus_cuniculus
ENSMUSG00000025337	Sbds	98	90.476	ENSORLG00000023489	sbds	100	82.329	Oryzias_latipes
ENSMUSG00000025337	Sbds	98	90.476	ENSORLG00020019282	sbds	100	81.928	Oryzias_latipes_hni
ENSMUSG00000025337	Sbds	98	90.476	ENSORLG00015008005	sbds	100	81.928	Oryzias_latipes_hsok
ENSMUSG00000025337	Sbds	98	90.476	ENSOMEG00000022747	sbds	100	82.731	Oryzias_melastigma
ENSMUSG00000025337	Sbds	100	100.000	ENSOGAG00000009011	-	100	98.000	Otolemur_garnettii
ENSMUSG00000025337	Sbds	96	88.554	ENSOGAG00000015036	-	100	81.200	Otolemur_garnettii
ENSMUSG00000025337	Sbds	100	97.674	ENSOARG00000010609	SBDS	100	97.600	Ovis_aries
ENSMUSG00000025337	Sbds	100	97.674	ENSPPAG00000043889	-	100	96.400	Pan_paniscus
ENSMUSG00000025337	Sbds	100	97.674	ENSPPRG00000002307	SBDS	100	97.200	Panthera_pardus
ENSMUSG00000025337	Sbds	100	97.674	ENSPTIG00000021308	SBDS	100	97.200	Panthera_tigris_altaica
ENSMUSG00000025337	Sbds	100	97.674	ENSPTRG00000019254	SBDS	100	97.200	Pan_troglodytes
ENSMUSG00000025337	Sbds	100	97.674	ENSPTRG00000048174	-	96	94.931	Pan_troglodytes
ENSMUSG00000025337	Sbds	98	97.619	ENSPTRG00000050835	-	100	82.400	Pan_troglodytes
ENSMUSG00000025337	Sbds	98	97.619	ENSPTRG00000047744	-	100	82.000	Pan_troglodytes
ENSMUSG00000025337	Sbds	100	97.674	ENSPANG00000004078	SBDS	100	96.800	Papio_anubis
ENSMUSG00000025337	Sbds	98	92.857	ENSPKIG00000006489	sbds	100	86.000	Paramormyrops_kingsleyae
ENSMUSG00000025337	Sbds	96	89.759	ENSPSIG00000014603	SBDS	99	89.855	Pelodiscus_sinensis
ENSMUSG00000025337	Sbds	98	92.857	ENSPMGG00000004246	sbds	100	83.534	Periophthalmus_magnuspinnatus
ENSMUSG00000025337	Sbds	100	98.400	ENSPEMG00000008728	Sbds	100	98.400	Peromyscus_maniculatus_bairdii
ENSMUSG00000025337	Sbds	100	100.000	ENSPCIG00000029718	SBDS	100	95.600	Phascolarctos_cinereus
ENSMUSG00000025337	Sbds	98	92.857	ENSPFOG00000015837	sbds	100	82.731	Poecilia_formosa
ENSMUSG00000025337	Sbds	98	92.857	ENSPLAG00000003641	sbds	100	82.731	Poecilia_latipinna
ENSMUSG00000025337	Sbds	98	92.857	ENSPMEG00000019483	sbds	100	82.731	Poecilia_mexicana
ENSMUSG00000025337	Sbds	98	92.857	ENSPREG00000018758	sbds	100	82.329	Poecilia_reticulata
ENSMUSG00000025337	Sbds	100	97.674	ENSPPYG00000017513	SBDS	100	97.200	Pongo_abelii
ENSMUSG00000025337	Sbds	100	97.674	ENSPCOG00000021098	SBDS	100	97.600	Propithecus_coquereli
ENSMUSG00000025337	Sbds	100	97.674	ENSPVAG00000009369	SBDS	100	97.200	Pteropus_vampyrus
ENSMUSG00000025337	Sbds	98	92.857	ENSPNYG00000022403	sbds	100	85.542	Pundamilia_nyererei
ENSMUSG00000025337	Sbds	98	92.857	ENSPNAG00000001120	sbds	100	86.000	Pygocentrus_nattereri
ENSMUSG00000025337	Sbds	100	100.000	ENSRNOG00000000888	Sbds	100	99.200	Rattus_norvegicus
ENSMUSG00000025337	Sbds	100	97.674	ENSRBIG00000035557	SBDS	100	97.200	Rhinopithecus_bieti
ENSMUSG00000025337	Sbds	100	69.767	ENSRBIG00000041549	-	63	82.716	Rhinopithecus_bieti
ENSMUSG00000025337	Sbds	100	97.674	ENSRROG00000040842	-	100	97.200	Rhinopithecus_roxellana
ENSMUSG00000025337	Sbds	100	88.372	ENSRROG00000041986	-	100	77.600	Rhinopithecus_roxellana
ENSMUSG00000025337	Sbds	100	55.814	YLR022C	-	96	41.463	Saccharomyces_cerevisiae
ENSMUSG00000025337	Sbds	96	96.386	ENSSBOG00000022460	SBDS	100	96.121	Saimiri_boliviensis_boliviensis
ENSMUSG00000025337	Sbds	100	97.674	ENSSHAG00000010263	SBDS	100	82.000	Sarcophilus_harrisii
ENSMUSG00000025337	Sbds	98	92.857	ENSSFOG00015001108	sbds	100	86.400	Scleropages_formosus
ENSMUSG00000025337	Sbds	98	92.857	ENSSMAG00000020506	sbds	100	85.542	Scophthalmus_maximus
ENSMUSG00000025337	Sbds	98	92.857	ENSSDUG00000001528	sbds	100	84.337	Seriola_dumerili
ENSMUSG00000025337	Sbds	98	92.857	ENSSLDG00000003659	sbds	100	84.739	Seriola_lalandi_dorsalis
ENSMUSG00000025337	Sbds	100	100.000	ENSSARG00000001899	-	73	100.000	Sorex_araneus
ENSMUSG00000025337	Sbds	100	100.000	ENSSARG00000013132	-	100	98.693	Sorex_araneus
ENSMUSG00000025337	Sbds	98	88.095	ENSSPUG00000002699	SBDS	100	86.000	Sphenodon_punctatus
ENSMUSG00000025337	Sbds	98	92.857	ENSSPAG00000016419	sbds	100	77.200	Stegastes_partitus
ENSMUSG00000025337	Sbds	100	97.674	ENSSSCG00000007732	SBDS	100	97.200	Sus_scrofa
ENSMUSG00000025337	Sbds	72	88.710	ENSTGUG00000003426	SBDS	99	89.091	Taeniopygia_guttata
ENSMUSG00000025337	Sbds	98	92.857	ENSTRUG00000021443	sbds	100	84.739	Takifugu_rubripes
ENSMUSG00000025337	Sbds	98	92.857	ENSTNIG00000019000	sbds	100	83.534	Tetraodon_nigroviridis
ENSMUSG00000025337	Sbds	100	100.000	ENSTBEG00000001178	SBDS	100	84.135	Tupaia_belangeri
ENSMUSG00000025337	Sbds	100	97.674	ENSTTRG00000003921	SBDS	100	77.600	Tursiops_truncatus
ENSMUSG00000025337	Sbds	100	97.674	ENSUAMG00000001326	SBDS	100	96.800	Ursus_americanus
ENSMUSG00000025337	Sbds	100	97.674	ENSUMAG00000015353	SBDS	100	96.800	Ursus_maritimus
ENSMUSG00000025337	Sbds	100	97.674	ENSVVUG00000016478	SBDS	100	96.400	Vulpes_vulpes
ENSMUSG00000025337	Sbds	98	92.857	ENSXETG00000010093	sbds	100	86.400	Xenopus_tropicalis
ENSMUSG00000025337	Sbds	98	92.857	ENSXCOG00000010639	sbds	100	75.502	Xiphophorus_couchianus
ENSMUSG00000025337	Sbds	98	92.857	ENSXMAG00000006065	sbds	100	83.133	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000922	spindle pole	-	ISO	Component
GO:0001833	inner cell mass cell proliferation	16914746.	IMP	Process
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0006364	rRNA processing	-	ISO	Process
GO:0007052	mitotic spindle organization	-	ISO	Process
GO:0008017	microtubule binding	-	ISO	Function
GO:0008283	cell proliferation	-	ISO	Process
GO:0019843	rRNA binding	-	ISO	Function
GO:0030282	bone mineralization	-	ISO	Process
GO:0030595	leukocyte chemotaxis	-	ISO	Process
GO:0042254	ribosome biogenesis	-	IEA	Process
GO:0042256	mature ribosome assembly	-	ISO	Process
GO:0043022	ribosome binding	-	ISO	Function
GO:0048539	bone marrow development	-	ISO	Process