EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000025393 (Gene tree)
Gene ID: 11947
Gene Symbol: Atp5b
Alias: -
Full Name: ATP synthase%2C H+ transporting mitochondrial F1 complex%2C beta subunit
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 7119
Position: chr10: 128083273-128090391
Accession: 107801
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000126040	-	1131	-	-	- (aa)	-	-
ENSMUST00000123803	-	768	-	-	- (aa)	-	-
ENSMUST00000125992	-	399	-	-	- (aa)	-	-
ENSMUST00000126751	-	478	-	-	- (aa)	-	-
ENSMUST00000026459	-	1916	-	ENSMUSP00000026459	529 (aa)	-	P56480
ENSMUST00000127439	-	343	-	-	- (aa)	-	-
ENSMUST00000139295	-	1288	-	-	- (aa)	-	-
ENSMUST00000144918	-	948	-	-	- (aa)	-	-
ENSMUST00000124993	-	600	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000025393's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu00190	Oxidative phosphorylation	KEGG
mmu01100	Metabolic pathways	KEGG
mmu04714	Thermogenesis	KEGG
mmu05010	Alzheimer disease	KEGG
mmu05012	Parkinson disease	KEGG
mmu05016	Huntington disease	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000025393's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000025393	Atp5b	98	81.285	WBGene00000229	atp-2	98	81.096	Caenorhabditis_elegans
ENSMUSG00000025393	Atp5b	100	96.219	ENSG00000110955	ATP5F1B	100	99.405	Homo_sapiens
ENSMUSG00000025393	Atp5b	90	77.895	YJR121W		91	79.701	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000275	mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	-	ISO	Component
GO:0001525	angiogenesis	-	ISO	Process
GO:0005509	calcium ion binding	-	ISO	Function
GO:0005515	protein binding	19941651.	IPI	Function
GO:0005524	ATP binding	-	ISO	Function
GO:0005739	mitochondrion	14651853.18614015.	HDA	Component
GO:0005739	mitochondrion	19808025.26767982.	IDA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005743	mitochondrial inner membrane	12865426.	HDA	Component
GO:0005743	mitochondrial inner membrane	-	ISO	Component
GO:0005753	mitochondrial proton-transporting ATP synthase complex	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006629	lipid metabolic process	17612527.	IMP	Process
GO:0006754	ATP biosynthetic process	-	ISO	Process
GO:0006811	ion transport	-	IEA	Process
GO:0006898	receptor-mediated endocytosis	-	ISO	Process
GO:0006933	negative regulation of cell adhesion involved in substrate-bound cell migration	17612527.	IMP	Process
GO:0009986	cell surface	-	ISO	Component
GO:0015986	ATP synthesis coupled proton transport	-	IEA	Process
GO:0016020	membrane	-	ISO	Component
GO:0016887	ATPase activity	-	ISO	Function
GO:0016887	ATPase activity	-	ISO	Function
GO:0030228	lipoprotein particle receptor activity	-	ISO	Function
GO:0031966	mitochondrial membrane	-	ISO	Component
GO:0042288	MHC class I protein binding	-	ISO	Function
GO:0042645	mitochondrial nucleoid	-	ISO	Component
GO:0043209	myelin sheath	17634366.	HDA	Component
GO:0043531	ADP binding	-	ISO	Function
GO:0043532	angiostatin binding	-	ISO	Function
GO:0043536	positive regulation of blood vessel endothelial cell migration	-	ISO	Process
GO:0045121	membrane raft	-	ISO	Component
GO:0045259	proton-transporting ATP synthase complex	-	ISO	Component
GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)	-	ISO	Component
GO:0046034	ATP metabolic process	-	ISO	Process
GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	-	ISO	Function
GO:0046961	proton-transporting ATPase activity, rotational mechanism	-	ISO	Function
GO:0051453	regulation of intracellular pH	-	ISO	Process
GO:0098761	cellular response to interleukin-7	29581031.	IDA	Process
GO:1902600	proton transmembrane transport	-	ISO	Process