EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000025404 (Gene tree)
Gene ID
71750
Gene Symbol
R3hdm2
Alias
1300003K24Rik
Full Name
R3H domain containing 2
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
119058 bases
Position
chr10:127380327-127499384
Accession
1919000
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000131007R3HPF01424.228e-1011
ENSMUSP00000069724R3HPF01424.228.3e-1011
ENSMUSP00000128659R3HPF01424.228.4e-1011
ENSMUSP00000076303R3HPF01424.228.5e-1011
ENSMUSP00000126608R3HPF01424.228.5e-1011
ENSMUSP00000100884R3HPF01424.228.6e-1011
ENSMUSP00000100885R3HPF01424.228.9e-1011
ENSMUSP00000100886R3HPF01424.228.9e-1011
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
23912277The RNA binding protein repertoire of embryonic stem cellsIC & mESC2013 Aug 4Kwon SCDOI: 10.1038/nsmb.2638
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000164469-763--- (aa)--
ENSMUST00000105250-3975XM_006514158ENSMUSP000001008851026 (aa)XP_006514221Q80TM6
ENSMUST00000170336-3639XM_006514159ENSMUSP000001286591012 (aa)XP_006514222Q148X5
ENSMUST00000168079-462-ENSMUSP00000130506154 (aa)-F6QRV2
ENSMUST00000064793-4175-ENSMUSP00000069724999 (aa)-Q80TM6
ENSMUST00000077046-4029XM_006514153ENSMUSP000000763031044 (aa)XP_006514216Q80TM6
ENSMUST00000105249-3654XM_006514162ENSMUSP00000100884992 (aa)XP_006514225Q80TM6
ENSMUST00000169888-2906XM_006514165ENSMUSP00000126760743 (aa)XP_006514228F6Z9T5
ENSMUST00000170164-407-ENSMUSP0000013287927 (aa)-E9PX98
ENSMUST00000168780-447-ENSMUSP0000012787298 (aa)-E9Q013
ENSMUST00000164161-2906-ENSMUSP00000126185102 (aa)-E9Q0F6
ENSMUST00000105251-3739XM_017314103ENSMUSP000001008861026 (aa)XP_017169592Q80TM6
ENSMUST00000168268-537--- (aa)--
ENSMUST00000164831-2937XM_006514163ENSMUSP00000131007978 (aa)XP_006514226E9Q9D6
ENSMUST00000166820-4281XM_006514152ENSMUSP000001266081044 (aa)XP_006514215Q80TM6
ENSMUST00000171823-874--- (aa)--
ENSMUST00000171426-938-ENSMUSP00000132683264 (aa)-F6WY86
ENSMUST00000171434-322-ENSMUSP0000013125562 (aa)-E9PZ57
ENSMUST00000165440-273-ENSMUSP0000013311891 (aa)-F6TDX7
ENSMUST00000111628-590-ENSMUSP0000010725524 (aa)-E9Q995
ENSMUST00000163794-395--- (aa)--
Gene Model
Click here to download ENSMUSG00000025404's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000025404's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000025404R3hdm26256.647ENSMUSG00000032503Arpp218661.088
ENSMUSG00000025404R3hdm29657.457ENSMUSG00000056211R3hdm19759.149
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000025404R3hdm210095.652ENSG00000179912R3HDM2100100.000Homo_sapiens
ENSMUSG00000025404R3hdm25738.487ENSAPOG00000021873-8937.931Acanthochromis_polyacanthus
ENSMUSG00000025404R3hdm29965.409ENSAPOG00000020341r3hdm29965.685Acanthochromis_polyacanthus
ENSMUSG00000025404R3hdm210093.505ENSAMEG00000004812R3HDM210094.747Ailuropoda_melanoleuca
ENSMUSG00000025404R3hdm29366.167ENSACIG00000016146r3hdm29866.595Amphilophus_citrinellus
ENSMUSG00000025404R3hdm29965.317ENSAOCG00000023694r3hdm29965.593Amphiprion_ocellaris
ENSMUSG00000025404R3hdm26737.363ENSAOCG00000003840-9337.174Amphiprion_ocellaris
ENSMUSG00000025404R3hdm26038.813ENSAPEG00000014325-8739.150Amphiprion_percula
ENSMUSG00000025404R3hdm29965.201ENSAPEG00000008851r3hdm210068.143Amphiprion_percula
ENSMUSG00000025404R3hdm29963.846ENSATEG00000025024r3hdm210068.134Anabas_testudineus
ENSMUSG00000025404R3hdm210086.978ENSAPLG00000004298R3HDM29483.130Anas_platyrhynchos
ENSMUSG00000025404R3hdm210080.980ENSACAG00000006388R3HDM210081.275Anolis_carolinensis
ENSMUSG00000025404R3hdm210095.455ENSANAG00000025397-10095.455Aotus_nancymaae
ENSMUSG00000025404R3hdm29890.844ENSANAG00000031310-10090.844Aotus_nancymaae
ENSMUSG00000025404R3hdm29964.377ENSACLG00000019106r3hdm29965.777Astatotilapia_calliptera
ENSMUSG00000025404R3hdm28870.822ENSAMXG00000017180r3hdm29962.724Astyanax_mexicanus
ENSMUSG00000025404R3hdm210095.161ENSBTAG00000018361R3HDM210095.161Bos_taurus
ENSMUSG00000025404R3hdm210095.158ENSCJAG00000007365R3HDM210095.158Callithrix_jacchus
ENSMUSG00000025404R3hdm210094.071ENSCAFG00000000215R3HDM210094.960Canis_familiaris
ENSMUSG00000025404R3hdm210093.649ENSCAFG00020023713R3HDM210094.556Canis_lupus_dingo
ENSMUSG00000025404R3hdm210094.657ENSCHIG00000014022R3HDM210094.657Capra_hircus
ENSMUSG00000025404R3hdm210092.885ENSTSYG00000001449R3HDM210093.972Carlito_syrichta
ENSMUSG00000025404R3hdm210092.788ENSCPOG00000009217R3HDM210092.788Cavia_porcellus
ENSMUSG00000025404R3hdm28995.106ENSCCAG00000026083R3HDM210094.881Cebus_capucinus
ENSMUSG00000025404R3hdm210095.455ENSCATG00000036929R3HDM210095.455Cercocebus_atys
ENSMUSG00000025404R3hdm210094.067ENSCLAG00000011997R3HDM210094.067Chinchilla_lanigera
ENSMUSG00000025404R3hdm210095.525ENSCSAG00000004911R3HDM210095.525Chlorocebus_sabaeus
ENSMUSG00000025404R3hdm27690.438ENSCHOG00000005636R3HDM29191.434Choloepus_hoffmanni
ENSMUSG00000025404R3hdm210080.093ENSCPBG00000013922R3HDM210081.023Chrysemys_picta_bellii
ENSMUSG00000025404R3hdm210095.060ENSCANG00000043807R3HDM210095.060Colobus_angolensis_palliatus
ENSMUSG00000025404R3hdm210095.670ENSCGRG00001017324R3hdm210095.670Cricetulus_griseus_chok1gshd
ENSMUSG00000025404R3hdm210095.812ENSCGRG00000003862R3hdm210095.812Cricetulus_griseus_crigri
ENSMUSG00000025404R3hdm29665.805ENSCSEG00000010925r3hdm210064.747Cynoglossus_semilaevis
ENSMUSG00000025404R3hdm29963.449ENSCVAG00000009058r3hdm29964.568Cyprinodon_variegatus
ENSMUSG00000025404R3hdm29363.549ENSDARG00000102610r3hdm29965.042Danio_rerio
ENSMUSG00000025404R3hdm210094.579ENSDNOG00000015033R3HDM210095.082Dasypus_novemcinctus
ENSMUSG00000025404R3hdm29495.228ENSDORG00000011462R3hdm29995.228Dipodomys_ordii
ENSMUSG00000025404R3hdm210094.923ENSEASG00005007091R3HDM210094.923Equus_asinus_asinus
ENSMUSG00000025404R3hdm210094.732ENSECAG00000003157R3HDM210094.732Equus_caballus
ENSMUSG00000025404R3hdm29863.115ENSELUG00000015969r3hdm29864.572Esox_lucius
ENSMUSG00000025404R3hdm210094.157ENSFCAG00000000192R3HDM29994.629Felis_catus
ENSMUSG00000025404R3hdm28977.419ENSFALG00000000255R3HDM210075.798Ficedula_albicollis
ENSMUSG00000025404R3hdm210093.314ENSFDAG00000019385R3HDM210094.460Fukomys_damarensis
ENSMUSG00000025404R3hdm25138.838ENSFHEG00000007936-7637.148Fundulus_heteroclitus
ENSMUSG00000025404R3hdm29962.534ENSFHEG00000016484r3hdm29964.510Fundulus_heteroclitus
ENSMUSG00000025404R3hdm29565.256ENSGMOG00000007961r3hdm210064.764Gadus_morhua
ENSMUSG00000025404R3hdm210079.628ENSGALG00000043736R3HDM210079.261Gallus_gallus
ENSMUSG00000025404R3hdm29964.907ENSGAFG00000013887r3hdm210064.181Gambusia_affinis
ENSMUSG00000025404R3hdm26236.556ENSGAFG00000015558-8836.012Gambusia_affinis
ENSMUSG00000025404R3hdm29566.797ENSGACG00000006442r3hdm210068.173Gasterosteus_aculeatus
ENSMUSG00000025404R3hdm210080.372ENSGAGG00000017797R3HDM210081.036Gopherus_agassizii
ENSMUSG00000025404R3hdm210095.553ENSGGOG00000015007R3HDM210095.553Gorilla_gorilla
ENSMUSG00000025404R3hdm210094.157ENSHGLG00000010434-10094.157Heterocephalus_glaber_female
ENSMUSG00000025404R3hdm28886.887ENSHGLG00000010421-9786.887Heterocephalus_glaber_female
ENSMUSG00000025404R3hdm210094.061ENSHGLG00100004183-10094.061Heterocephalus_glaber_male
ENSMUSG00000025404R3hdm29682.827ENSHGLG00100018871-9983.474Heterocephalus_glaber_male
ENSMUSG00000025404R3hdm29963.472ENSHCOG00000001142r3hdm29664.238Hippocampus_comes
ENSMUSG00000025404R3hdm29962.231ENSIPUG00000023873r3hdm29963.977Ictalurus_punctatus
ENSMUSG00000025404R3hdm210092.748ENSSTOG00000013424R3HDM210093.769Ictidomys_tridecemlineatus
ENSMUSG00000025404R3hdm210094.540ENSJJAG00000010001R3hdm210095.019Jaculus_jaculus
ENSMUSG00000025404R3hdm29964.603ENSKMAG00000012695r3hdm29967.405Kryptolebias_marmoratus
ENSMUSG00000025404R3hdm25437.607ENSKMAG00000004052-7837.153Kryptolebias_marmoratus
ENSMUSG00000025404R3hdm29964.793ENSLBEG00000013115r3hdm29664.977Labrus_bergylta
ENSMUSG00000025404R3hdm29572.818ENSLACG00000019064r3hdm210072.555Latimeria_chalumnae
ENSMUSG00000025404R3hdm210070.600ENSLOCG00000005976r3hdm210071.780Lepisosteus_oculatus
ENSMUSG00000025404R3hdm210093.678ENSLAFG00000006510R3HDM210093.678Loxodonta_africana
ENSMUSG00000025404R3hdm210095.501ENSMFAG00000036385R3HDM210095.501Macaca_fascicularis
ENSMUSG00000025404R3hdm210095.690ENSMMUG00000021789R3HDM210095.690Macaca_mulatta
ENSMUSG00000025404R3hdm210095.751ENSMNEG00000025314R3HDM210095.751Macaca_nemestrina
ENSMUSG00000025404R3hdm210095.553ENSMLEG00000028915R3HDM210095.553Mandrillus_leucophaeus
ENSMUSG00000025404R3hdm29964.161ENSMAMG00000009793r3hdm29964.614Mastacembelus_armatus
ENSMUSG00000025404R3hdm25537.175ENSMAMG00000011755-8837.349Mastacembelus_armatus
ENSMUSG00000025404R3hdm29964.377ENSMZEG00005007319r3hdm29965.777Maylandia_zebra
ENSMUSG00000025404R3hdm210095.074ENSMICG00000012389R3HDM210095.074Microcebus_murinus
ENSMUSG00000025404R3hdm210095.712ENSMOCG00000014425R3hdm210095.712Microtus_ochrogaster
ENSMUSG00000025404R3hdm29467.197ENSMMOG00000007448r3hdm29967.197Mola_mola
ENSMUSG00000025404R3hdm28676.190ENSMALG00000010211r3hdm29860.108Monopterus_albus
ENSMUSG00000025404R3hdm210099.139MGP_CAROLIEiJ_G0015896R3hdm210099.139Mus_caroli
ENSMUSG00000025404R3hdm210098.180MGP_PahariEiJ_G0031189R3hdm210098.180Mus_pahari
ENSMUSG00000025404R3hdm210099.618MGP_SPRETEiJ_G0016722R3hdm210099.618Mus_spretus
ENSMUSG00000025404R3hdm29892.412ENSMPUG00000001818R3HDM29793.288Mustela_putorius_furo
ENSMUSG00000025404R3hdm210094.157ENSMLUG00000004980R3HDM210094.157Myotis_lucifugus
ENSMUSG00000025404R3hdm210095.690ENSNGAG00000018800R3hdm210095.690Nannospalax_galili
ENSMUSG00000025404R3hdm29464.731ENSNBRG00000004483r3hdm29966.667Neolamprologus_brichardi
ENSMUSG00000025404R3hdm210095.356ENSNLEG00000017351R3HDM210095.356Nomascus_leucogenys
ENSMUSG00000025404R3hdm29980.784ENSMEUG00000008588R3HDM210080.784Notamacropus_eugenii
ENSMUSG00000025404R3hdm210087.526ENSOPRG00000013670R3HDM210087.526Ochotona_princeps
ENSMUSG00000025404R3hdm29965.034ENSONIG00000005075r3hdm29966.535Oreochromis_niloticus
ENSMUSG00000025404R3hdm210094.179ENSOCUG00000013258R3HDM210094.179Oryctolagus_cuniculus
ENSMUSG00000025404R3hdm29964.438ENSORLG00000005502r3hdm29964.903Oryzias_latipes
ENSMUSG00000025404R3hdm29964.253ENSORLG00020017069r3hdm29964.717Oryzias_latipes_hni
ENSMUSG00000025404R3hdm29964.345ENSORLG00015012735r3hdm29964.810Oryzias_latipes_hsok
ENSMUSG00000025404R3hdm29960.939ENSOMEG00000018079r3hdm29962.024Oryzias_melastigma
ENSMUSG00000025404R3hdm210095.059ENSOGAG00000012055R3HDM210095.059Otolemur_garnettii
ENSMUSG00000025404R3hdm29681.420ENSOGAG00000027966-9981.420Otolemur_garnettii
ENSMUSG00000025404R3hdm210094.171ENSOARG00000006929R3HDM210094.171Ovis_aries
ENSMUSG00000025404R3hdm210095.652ENSPPAG00000034395R3HDM210095.652Pan_paniscus
ENSMUSG00000025404R3hdm210094.071ENSPPRG00000009240R3HDM210094.960Panthera_pardus
ENSMUSG00000025404R3hdm210094.071ENSPTIG00000008752R3HDM210094.960Panthera_tigris_altaica
ENSMUSG00000025404R3hdm210095.603ENSPTRG00000046457R3HDM210095.603Pan_troglodytes
ENSMUSG00000025404R3hdm29894.266ENSPANG00000024002R3HDM210094.266Papio_anubis
ENSMUSG00000025404R3hdm29966.826ENSPKIG00000003171r3hdm29967.433Paramormyrops_kingsleyae
ENSMUSG00000025404R3hdm26372.727ENSPSIG00000006954R3HDM210073.824Pelodiscus_sinensis
ENSMUSG00000025404R3hdm29368.162ENSPMGG00000007061r3hdm29968.162Periophthalmus_magnuspinnatus
ENSMUSG00000025404R3hdm210094.928ENSPEMG00000015964R3hdm210094.928Peromyscus_maniculatus_bairdii
ENSMUSG00000025404R3hdm210089.045ENSPCIG00000023841R3HDM210089.045Phascolarctos_cinereus
ENSMUSG00000025404R3hdm29580.115ENSPFOG00000006077r3hdm29576.369Poecilia_formosa
ENSMUSG00000025404R3hdm29964.064ENSPLAG00000002971r3hdm29964.507Poecilia_latipinna
ENSMUSG00000025404R3hdm29964.064ENSPMEG00000005330r3hdm29964.507Poecilia_mexicana
ENSMUSG00000025404R3hdm25538.167ENSPMEG00000014457-8637.724Poecilia_mexicana
ENSMUSG00000025404R3hdm29964.200ENSPREG00000008424r3hdm29964.635Poecilia_reticulata
ENSMUSG00000025404R3hdm29892.372ENSPPYG00000004685R3HDM28192.372Pongo_abelii
ENSMUSG00000025404R3hdm28893.015ENSPCAG00000014642R3HDM210086.047Procavia_capensis
ENSMUSG00000025404R3hdm210095.059ENSPCOG00000013201R3HDM210095.059Propithecus_coquereli
ENSMUSG00000025404R3hdm210094.540ENSPVAG00000003967R3HDM210094.540Pteropus_vampyrus
ENSMUSG00000025404R3hdm29464.382ENSPNYG00000013479r3hdm210066.180Pundamilia_nyererei
ENSMUSG00000025404R3hdm29963.948ENSPNAG00000017473r3hdm29965.374Pygocentrus_nattereri
ENSMUSG00000025404R3hdm210097.321ENSRNOG00000007801R3hdm210097.321Rattus_norvegicus
ENSMUSG00000025404R3hdm210092.984ENSRBIG00000037403R3HDM210092.688Rhinopithecus_bieti
ENSMUSG00000025404R3hdm210095.594ENSRROG00000022271R3HDM210095.553Rhinopithecus_roxellana
ENSMUSG00000025404R3hdm210095.455ENSSBOG00000023547R3HDM210095.455Saimiri_boliviensis_boliviensis
ENSMUSG00000025404R3hdm210086.299ENSSHAG00000003511R3HDM29989.796Sarcophilus_harrisii
ENSMUSG00000025404R3hdm29469.671ENSSFOG00015011219r3hdm29969.561Scleropages_formosus
ENSMUSG00000025404R3hdm29964.246ENSSMAG00000012073r3hdm210065.393Scophthalmus_maximus
ENSMUSG00000025404R3hdm25836.527ENSSDUG00000009188-9136.164Seriola_dumerili
ENSMUSG00000025404R3hdm29965.569ENSSDUG00000019269r3hdm210065.817Seriola_dumerili
ENSMUSG00000025404R3hdm29965.894ENSSLDG00000005252r3hdm210066.170Seriola_lalandi_dorsalis
ENSMUSG00000025404R3hdm29388.007ENSSARG00000003958R3HDM29488.007Sorex_araneus
ENSMUSG00000025404R3hdm210077.864ENSSPUG00000014132R3HDM210078.058Sphenodon_punctatus
ENSMUSG00000025404R3hdm29964.888ENSSPAG00000022594r3hdm210067.206Stegastes_partitus
ENSMUSG00000025404R3hdm26534.075ENSSPAG00000016856-9434.777Stegastes_partitus
ENSMUSG00000025404R3hdm210094.859ENSSSCG00000026498R3HDM210095.200Sus_scrofa
ENSMUSG00000025404R3hdm27380.208ENSTGUG00000015881R3HDM210080.208Taeniopygia_guttata
ENSMUSG00000025404R3hdm29562.384ENSTRUG00000015075r3hdm29964.786Takifugu_rubripes
ENSMUSG00000025404R3hdm28781.322ENSTNIG00000007057r3hdm28977.586Tetraodon_nigroviridis
ENSMUSG00000025404R3hdm28194.982ENSTBEG00000015967R3HDM28194.982Tupaia_belangeri
ENSMUSG00000025404R3hdm29688.034ENSTTRG00000013082R3HDM29388.675Tursiops_truncatus
ENSMUSG00000025404R3hdm210093.665ENSUAMG00000020913R3HDM210094.932Ursus_americanus
ENSMUSG00000025404R3hdm210088.732ENSUMAG00000019179R3HDM210090.141Ursus_maritimus
ENSMUSG00000025404R3hdm210088.697ENSVPAG00000008656R3HDM210088.697Vicugna_pacos
ENSMUSG00000025404R3hdm29893.756ENSVVUG00000018014R3HDM29794.634Vulpes_vulpes
ENSMUSG00000025404R3hdm210073.365ENSXETG00000017153r3hdm210073.848Xenopus_tropicalis
ENSMUSG00000025404R3hdm28663.326ENSXCOG00000013882r3hdm210063.636Xiphophorus_couchianus
ENSMUSG00000025404R3hdm26236.254ENSXMAG00000002994-8835.714Xiphophorus_maculatus
ENSMUSG00000025404R3hdm29964.385ENSXMAG00000017978r3hdm29965.005Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003676nucleic acid binding-IEAFunction
GO:0005575cellular_component-NDComponent
GO:0005634nucleus-IEAComponent
GO:0008150biological_process-NDProcess

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