EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000025428 (Gene tree)
Gene ID: 11946
Gene Symbol: Atp5a1
Alias: Atpm|D18Ertd206e|Mom2
Full Name: ATP synthase%2C H+ transporting%2C mitochondrial F1 complex%2C alpha subunit 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 9141
Position: chr18: 77773729-77782869
Accession: 88115
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000128073	-	765	-	-	- (aa)	-	-
ENSMUST00000026495	-	2471	-	ENSMUSP00000026495	553 (aa)	-	Q03265
ENSMUST00000114748	-	2674	-	ENSMUSP00000110396	503 (aa)	-	D3Z6F5
ENSMUST00000146869	-	816	-	-	- (aa)	-	-
ENSMUST00000135678	-	774	-	ENSMUSP00000120436	89 (aa)	-	D6RJ16

Gene Model

Click here to download ENSMUSG00000025428's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu00190	Oxidative phosphorylation	KEGG
mmu01100	Metabolic pathways	KEGG
mmu04714	Thermogenesis	KEGG
mmu05010	Alzheimer disease	KEGG
mmu05012	Parkinson disease	KEGG
mmu05016	Huntington disease	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000025428's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000025428	Atp5a1	99	85.458	FBgn0011211	blw	96	82.176	Drosophila_melanogaster
ENSMUSG00000025428	Atp5a1	99	98.606	ENSG00000152234	ATP5F1A	100	99.346	Homo_sapiens
ENSMUSG00000025428	Atp5a1	99	74.052	YBL099W		95	73.062	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000275	mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	21873635.	IBA	Component
GO:0000275	mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	-	ISO	Component
GO:0001937	negative regulation of endothelial cell proliferation	-	ISO	Process
GO:0002020	protease binding	-	ISO	Function
GO:0005515	protein binding	19941651.	IPI	Function
GO:0005524	ATP binding	21873635.	IBA	Function
GO:0005524	ATP binding	7916601.	IMP	Function
GO:0005524	ATP binding	-	ISO	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005739	mitochondrion	14651853.18614015.	HDA	Component
GO:0005739	mitochondrion	19808025.26767982.	IDA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005743	mitochondrial inner membrane	12865426.	HDA	Component
GO:0005743	mitochondrial inner membrane	-	ISO	Component
GO:0005753	mitochondrial proton-transporting ATP synthase complex	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006629	lipid metabolic process	17612527.	IMP	Process
GO:0006754	ATP biosynthetic process	21873635.	IBA	Process
GO:0006754	ATP biosynthetic process	-	ISO	Process
GO:0006811	ion transport	-	IEA	Process
GO:0006979	response to oxidative stress	21873635.	IBA	Process
GO:0008180	COP9 signalosome	-	ISO	Component
GO:0009986	cell surface	-	ISO	Component
GO:0015986	ATP synthesis coupled proton transport	21873635.	IBA	Process
GO:0016020	membrane	20080761.	IMP	Component
GO:0016020	membrane	-	ISO	Component
GO:0016887	ATPase activity	21873635.	IBA	Function
GO:0016887	ATPase activity	-	ISO	Function
GO:0022900	electron transport chain	21873635.	IBA	Process
GO:0032559	adenyl ribonucleotide binding	-	IEA	Function
GO:0042288	MHC class I protein binding	-	ISO	Function
GO:0043209	myelin sheath	17634366.	HDA	Component
GO:0043531	ADP binding	21873635.	IBA	Function
GO:0043531	ADP binding	-	ISO	Function
GO:0043532	angiostatin binding	-	ISO	Function
GO:0043536	positive regulation of blood vessel endothelial cell migration	-	ISO	Process
GO:0045121	membrane raft	-	ISO	Component
GO:0045259	proton-transporting ATP synthase complex	-	ISO	Component
GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)	-	ISO	Component
GO:0046034	ATP metabolic process	21873635.	IBA	Process
GO:0046034	ATP metabolic process	-	ISO	Process
GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	21873635.	IBA	Function
GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	17612527.	IMP	Function
GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	-	ISO	Function
GO:1902600	proton transmembrane transport	-	IEA	Process