EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000025465 (Gene tree)
Gene ID: 93747
Gene Symbol: Echs1
Alias: -
Full Name: enoyl Coenzyme A hydratase%2C short chain%2C 1%2C mitochondrial
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 10767
Position: chr7: 140105710-140116476
Accession: 2136460
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000026538	-	1557	-	ENSMUSP00000026538	290 (aa)	-	Q8BH95
ENSMUST00000211120	-	3128	-	-	- (aa)	-	-
ENSMUST00000147643	-	4088	-	-	- (aa)	-	-
ENSMUST00000151505	-	3890	-	-	- (aa)	-	-
ENSMUST00000155647	-	2474	-	-	- (aa)	-	-
ENSMUST00000125337	-	373	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000025465's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu00062	Fatty acid elongation	KEGG
mmu00071	Fatty acid degradation	KEGG
mmu00280	Valine, leucine and isoleucine degradation	KEGG
mmu00310	Lysine degradation	KEGG
mmu00380	Tryptophan metabolism	KEGG
mmu00410	beta-Alanine metabolism	KEGG
mmu00640	Propanoate metabolism	KEGG
mmu00650	Butanoate metabolism	KEGG
mmu01100	Metabolic pathways	KEGG
mmu01200	Carbon metabolism	KEGG
mmu01212	Fatty acid metabolism	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000025465's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000025465	Echs1	95	60.145	WBGene00001155	ech-6	95	60.145	Caenorhabditis_elegans
ENSMUSG00000025465	Echs1	97	59.298	FBgn0033879	CG6543	97	59.298	Drosophila_melanogaster
ENSMUSG00000025465	Echs1	100	87.586	ENSG00000127884	ECHS1	100	87.586	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003824	catalytic activity	-	IEA	Function
GO:0004300	enoyl-CoA hydratase activity	21873635.	IBA	Function
GO:0004300	enoyl-CoA hydratase activity	-	ISO	Function
GO:0005739	mitochondrion	14651853.18614015.	HDA	Component
GO:0005739	mitochondrion	21873635.	IBA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0006629	lipid metabolic process	-	IEA	Process
GO:0006631	fatty acid metabolic process	-	IEA	Process
GO:0006635	fatty acid beta-oxidation	21873635.	IBA	Process
GO:0006635	fatty acid beta-oxidation	-	ISO	Process
GO:0016829	lyase activity	-	IEA	Function