EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000025571 (Gene tree)
Gene ID: 217351
Gene Symbol: Tnrc6c
Alias: 9930033H14Rik
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 109151 bases
Position: chr11:117654289-117763439
Accession: 2443265
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000026658	Ago_hook	PF10427.9	1.8e-23	1	1
ENSMUSP00000101951	Ago_hook	PF10427.9	1.8e-23	1	1
ENSMUSP00000115221	Ago_hook	PF10427.9	2e-23	1	1
ENSMUSP00000115221	RRM_1	PF00076.22	0.00053	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000141115	-	11590	-	-	- (aa)	-	-
ENSMUST00000026658	-	8724	XM_006533109	ENSMUSP00000026658	1900 (aa)	XP_006533172	B1ATC3
ENSMUST00000140347	-	742	-	-	- (aa)	-	-
ENSMUST00000141287	-	1829	-	-	- (aa)	-	-
ENSMUST00000106344	-	8847	XM_011248961	ENSMUSP00000101951	1900 (aa)	XP_011247263	B1ATC3
ENSMUST00000138299	-	6612	-	ENSMUSP00000115221	1732 (aa)	-	B7ZC94

Gene Model

Click here to download ENSMUSG00000025571's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000025571's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000025571	Tnrc6c	99	40.570	ENSMUSG00000052707	Tnrc6a	98	44.482
ENSMUSG00000025571	Tnrc6c	99	35.191	ENSMUSG00000047888	Tnrc6b	99	39.456

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000025571	Tnrc6c	100	88.509	ENSG00000078687	TNRC6C	100	91.006	Homo_sapiens
ENSMUSG00000025571	Tnrc6c	77	54.786	ENSAPOG00000019749	tnrc6c1	98	49.517	Acanthochromis_polyacanthus
ENSMUSG00000025571	Tnrc6c	99	85.420	ENSAMEG00000013756	TNRC6C	99	85.754	Ailuropoda_melanoleuca
ENSMUSG00000025571	Tnrc6c	94	50.727	ENSACIG00000008075	tnrc6c1	98	51.948	Amphilophus_citrinellus
ENSMUSG00000025571	Tnrc6c	75	68.871	ENSAOCG00000023968	tnrc6c1	99	48.531	Amphiprion_ocellaris
ENSMUSG00000025571	Tnrc6c	77	54.352	ENSAPEG00000009020	tnrc6c1	99	48.786	Amphiprion_percula
ENSMUSG00000025571	Tnrc6c	100	82.563	ENSAPLG00000005456	TNRC6C	100	81.724	Anas_platyrhynchos
ENSMUSG00000025571	Tnrc6c	100	83.408	ENSACAG00000016198	TNRC6C	98	82.292	Anolis_carolinensis
ENSMUSG00000025571	Tnrc6c	100	88.110	ENSANAG00000021554	TNRC6C	100	90.823	Aotus_nancymaae
ENSMUSG00000025571	Tnrc6c	99	47.046	ENSACLG00000000424	tnrc6c1	99	46.642	Astatotilapia_calliptera
ENSMUSG00000025571	Tnrc6c	100	85.273	ENSBTAG00000018658	TNRC6C	100	87.811	Bos_taurus
ENSMUSG00000025571	Tnrc6c	100	88.222	ENSCJAG00000019431	TNRC6C	100	90.645	Callithrix_jacchus
ENSMUSG00000025571	Tnrc6c	99	87.669	ENSCAFG00000005224	TNRC6C	99	87.149	Canis_familiaris
ENSMUSG00000025571	Tnrc6c	99	89.284	ENSCAFG00020006661	TNRC6C	100	88.922	Canis_lupus_dingo
ENSMUSG00000025571	Tnrc6c	100	85.953	ENSCHIG00000026004	TNRC6C	100	85.798	Capra_hircus
ENSMUSG00000025571	Tnrc6c	97	90.029	ENSTSYG00000005403	TNRC6C	100	90.145	Carlito_syrichta
ENSMUSG00000025571	Tnrc6c	100	84.602	ENSCAPG00000007307	TNRC6C	99	85.348	Cavia_aperea
ENSMUSG00000025571	Tnrc6c	100	89.459	ENSCPOG00000000467	TNRC6C	100	89.862	Cavia_porcellus
ENSMUSG00000025571	Tnrc6c	100	88.615	ENSCCAG00000030524	TNRC6C	100	91.119	Cebus_capucinus
ENSMUSG00000025571	Tnrc6c	100	88.559	ENSCATG00000033135	TNRC6C	100	91.001	Cercocebus_atys
ENSMUSG00000025571	Tnrc6c	100	91.705	ENSCLAG00000011139	TNRC6C	99	90.803	Chinchilla_lanigera
ENSMUSG00000025571	Tnrc6c	99	88.895	ENSCSAG00000005167	TNRC6C	99	88.281	Chlorocebus_sabaeus
ENSMUSG00000025571	Tnrc6c	76	89.793	ENSCHOG00000000088	TNRC6C	75	89.050	Choloepus_hoffmanni
ENSMUSG00000025571	Tnrc6c	100	85.920	ENSCPBG00000027960	TNRC6C	100	86.036	Chrysemys_picta_bellii
ENSMUSG00000025571	Tnrc6c	100	88.278	ENSCANG00000041771	TNRC6C	100	90.705	Colobus_angolensis_palliatus
ENSMUSG00000025571	Tnrc6c	100	94.828	ENSCGRG00001022686	Tnrc6c	100	94.556	Cricetulus_griseus_chok1gshd
ENSMUSG00000025571	Tnrc6c	100	95.266	ENSCGRG00000018041	Tnrc6c	100	94.556	Cricetulus_griseus_crigri
ENSMUSG00000025571	Tnrc6c	77	52.617	ENSCSEG00000012744	tnrc6c1	98	47.672	Cynoglossus_semilaevis
ENSMUSG00000025571	Tnrc6c	100	51.947	ENSDARG00000076847	tnrc6c1	99	52.617	Danio_rerio
ENSMUSG00000025571	Tnrc6c	100	86.622	ENSDNOG00000003247	TNRC6C	99	84.563	Dasypus_novemcinctus
ENSMUSG00000025571	Tnrc6c	100	86.460	ENSDORG00000004558	Tnrc6c	100	87.478	Dipodomys_ordii
ENSMUSG00000025571	Tnrc6c	90	81.913	ENSETEG00000005527	TNRC6C	90	82.000	Echinops_telfairi
ENSMUSG00000025571	Tnrc6c	97	89.686	ENSEASG00005004799	TNRC6C	100	89.804	Equus_asinus_asinus
ENSMUSG00000025571	Tnrc6c	100	89.465	ENSECAG00000012486	TNRC6C	99	88.759	Equus_caballus
ENSMUSG00000025571	Tnrc6c	96	87.986	ENSEEUG00000010008	TNRC6C	96	87.986	Erinaceus_europaeus
ENSMUSG00000025571	Tnrc6c	100	85.003	ENSFCAG00000028358	TNRC6C	100	87.773	Felis_catus
ENSMUSG00000025571	Tnrc6c	97	82.473	ENSFALG00000000848	TNRC6C	100	82.303	Ficedula_albicollis
ENSMUSG00000025571	Tnrc6c	100	90.668	ENSFDAG00000010368	TNRC6C	100	91.187	Fukomys_damarensis
ENSMUSG00000025571	Tnrc6c	99	47.071	ENSFHEG00000002936	tnrc6c1	99	46.508	Fundulus_heteroclitus
ENSMUSG00000025571	Tnrc6c	100	84.403	ENSGALG00000001725	TNRC6C	100	86.307	Gallus_gallus
ENSMUSG00000025571	Tnrc6c	99	48.650	ENSGAFG00000019019	tnrc6c1	99	47.780	Gambusia_affinis
ENSMUSG00000025571	Tnrc6c	77	53.190	ENSGACG00000012320	tnrc6c1	97	48.062	Gasterosteus_aculeatus
ENSMUSG00000025571	Tnrc6c	100	85.353	ENSGAGG00000022043	TNRC6C	99	84.901	Gopherus_agassizii
ENSMUSG00000025571	Tnrc6c	100	87.892	ENSGGOG00000011304	TNRC6C	100	90.237	Gorilla_gorilla
ENSMUSG00000025571	Tnrc6c	97	50.204	ENSHBUG00000010846	tnrc6c1	99	46.755	Haplochromis_burtoni
ENSMUSG00000025571	Tnrc6c	100	91.129	ENSHGLG00000004809	TNRC6C	99	90.170	Heterocephalus_glaber_female
ENSMUSG00000025571	Tnrc6c	100	90.424	ENSHGLG00100012597	TNRC6C	99	90.383	Heterocephalus_glaber_male
ENSMUSG00000025571	Tnrc6c	99	52.508	ENSIPUG00000000818	tnrc6c1	98	51.586	Ictalurus_punctatus
ENSMUSG00000025571	Tnrc6c	100	90.794	ENSSTOG00000009101	TNRC6C	100	91.082	Ictidomys_tridecemlineatus
ENSMUSG00000025571	Tnrc6c	100	91.264	ENSJJAG00000017055	Tnrc6c	99	90.580	Jaculus_jaculus
ENSMUSG00000025571	Tnrc6c	99	47.512	ENSKMAG00000021023	tnrc6c1	97	50.564	Kryptolebias_marmoratus
ENSMUSG00000025571	Tnrc6c	100	74.587	ENSLACG00000015283	TNRC6C	100	74.701	Latimeria_chalumnae
ENSMUSG00000025571	Tnrc6c	100	56.223	ENSLOCG00000013377	tnrc6c1	99	56.052	Lepisosteus_oculatus
ENSMUSG00000025571	Tnrc6c	100	88.991	ENSLAFG00000011122	TNRC6C	99	88.729	Loxodonta_africana
ENSMUSG00000025571	Tnrc6c	100	88.615	ENSMFAG00000043943	TNRC6C	100	91.060	Macaca_fascicularis
ENSMUSG00000025571	Tnrc6c	100	89.014	ENSMMUG00000011924	TNRC6C	100	91.060	Macaca_mulatta
ENSMUSG00000025571	Tnrc6c	100	88.559	ENSMNEG00000030405	TNRC6C	100	91.001	Macaca_nemestrina
ENSMUSG00000025571	Tnrc6c	100	88.615	ENSMLEG00000033436	TNRC6C	100	91.060	Mandrillus_leucophaeus
ENSMUSG00000025571	Tnrc6c	95	52.851	ENSMAMG00000023613	tnrc6c1	97	50.603	Mastacembelus_armatus
ENSMUSG00000025571	Tnrc6c	97	50.068	ENSMZEG00005010920	tnrc6c1	97	50.066	Maylandia_zebra
ENSMUSG00000025571	Tnrc6c	94	83.398	ENSMGAG00000003906	TNRC6C	100	76.803	Meleagris_gallopavo
ENSMUSG00000025571	Tnrc6c	97	94.615	ENSMAUG00000021618	Tnrc6c	100	95.089	Mesocricetus_auratus
ENSMUSG00000025571	Tnrc6c	100	89.176	ENSMICG00000003952	TNRC6C	100	91.593	Microcebus_murinus
ENSMUSG00000025571	Tnrc6c	100	96.824	ENSMOCG00000015879	Tnrc6c	100	96.824	Microtus_ochrogaster
ENSMUSG00000025571	Tnrc6c	76	55.227	ENSMMOG00000005203	tnrc6c1	97	50.203	Mola_mola
ENSMUSG00000025571	Tnrc6c	100	84.994	ENSMODG00000001785	TNRC6C	99	84.387	Monodelphis_domestica
ENSMUSG00000025571	Tnrc6c	100	99.158	MGP_CAROLIEiJ_G0017465	Tnrc6c	100	99.158	Mus_caroli
ENSMUSG00000025571	Tnrc6c	100	98.672	MGP_PahariEiJ_G0018593	Tnrc6c	100	98.672	Mus_pahari
ENSMUSG00000025571	Tnrc6c	100	99.737	MGP_SPRETEiJ_G0018309	Tnrc6c	100	99.737	Mus_spretus
ENSMUSG00000025571	Tnrc6c	99	84.685	ENSMPUG00000013348	TNRC6C	98	84.860	Mustela_putorius_furo
ENSMUSG00000025571	Tnrc6c	100	81.575	ENSMLUG00000014431	TNRC6C	98	80.733	Myotis_lucifugus
ENSMUSG00000025571	Tnrc6c	100	93.908	ENSNGAG00000012203	Tnrc6c	99	94.033	Nannospalax_galili
ENSMUSG00000025571	Tnrc6c	99	47.539	ENSNBRG00000005344	tnrc6c1	99	47.043	Neolamprologus_brichardi
ENSMUSG00000025571	Tnrc6c	99	85.915	ENSNLEG00000000047	TNRC6C	99	86.200	Nomascus_leucogenys
ENSMUSG00000025571	Tnrc6c	98	79.812	ENSMEUG00000005104	TNRC6C	100	79.812	Notamacropus_eugenii
ENSMUSG00000025571	Tnrc6c	97	91.340	ENSODEG00000012499	TNRC6C	100	91.637	Octodon_degus
ENSMUSG00000025571	Tnrc6c	87	53.060	ENSONIG00000002210	tnrc6c1	96	54.022	Oreochromis_niloticus
ENSMUSG00000025571	Tnrc6c	100	82.979	ENSOANG00000009758	-	92	82.979	Ornithorhynchus_anatinus
ENSMUSG00000025571	Tnrc6c	85	78.756	ENSOCUG00000006122	TNRC6C	95	76.613	Oryctolagus_cuniculus
ENSMUSG00000025571	Tnrc6c	99	47.545	ENSORLG00000009837	tnrc6c1	100	67.658	Oryzias_latipes
ENSMUSG00000025571	Tnrc6c	99	46.391	ENSORLG00020016510	tnrc6c1	99	48.374	Oryzias_latipes_hni
ENSMUSG00000025571	Tnrc6c	81	42.465	ENSORLG00015000171	tnrc6c1	97	43.636	Oryzias_latipes_hsok
ENSMUSG00000025571	Tnrc6c	99	48.004	ENSOMEG00000000357	tnrc6c1	99	47.865	Oryzias_melastigma
ENSMUSG00000025571	Tnrc6c	97	88.754	ENSOGAG00000007197	TNRC6C	100	88.870	Otolemur_garnettii
ENSMUSG00000025571	Tnrc6c	96	82.048	ENSOARG00000006041	TNRC6C	97	82.022	Ovis_aries
ENSMUSG00000025571	Tnrc6c	100	88.446	ENSPPAG00000027160	TNRC6C	100	90.882	Pan_paniscus
ENSMUSG00000025571	Tnrc6c	100	85.115	ENSPPRG00000018881	TNRC6C	100	87.891	Panthera_pardus
ENSMUSG00000025571	Tnrc6c	100	88.446	ENSPTRG00000009699	TNRC6C	100	90.882	Pan_troglodytes
ENSMUSG00000025571	Tnrc6c	100	88.615	ENSPANG00000019994	TNRC6C	100	91.222	Papio_anubis
ENSMUSG00000025571	Tnrc6c	90	62.108	ENSPKIG00000005428	tnrc6c1	98	51.373	Paramormyrops_kingsleyae
ENSMUSG00000025571	Tnrc6c	100	83.908	ENSPSIG00000018069	TNRC6C	100	83.678	Pelodiscus_sinensis
ENSMUSG00000025571	Tnrc6c	63	54.839	ENSPMGG00000022911	tnrc6c1	97	64.372	Periophthalmus_magnuspinnatus
ENSMUSG00000025571	Tnrc6c	100	96.034	ENSPEMG00000009785	Tnrc6c	99	96.004	Peromyscus_maniculatus_bairdii
ENSMUSG00000025571	Tnrc6c	56	83.419	ENSPCIG00000017421	-	99	83.419	Phascolarctos_cinereus
ENSMUSG00000025571	Tnrc6c	99	48.949	ENSPFOG00000012560	tnrc6c1	97	54.088	Poecilia_formosa
ENSMUSG00000025571	Tnrc6c	94	50.086	ENSPLAG00000021055	tnrc6c1	97	49.857	Poecilia_latipinna
ENSMUSG00000025571	Tnrc6c	100	88.958	ENSPPYG00000008679	TNRC6C	98	88.490	Pongo_abelii
ENSMUSG00000025571	Tnrc6c	93	92.654	ENSPCAG00000012510	TNRC6C	90	92.654	Procavia_capensis
ENSMUSG00000025571	Tnrc6c	97	92.066	ENSPCOG00000021451	TNRC6C	100	92.126	Propithecus_coquereli
ENSMUSG00000025571	Tnrc6c	96	88.983	ENSPVAG00000002008	TNRC6C	95	88.983	Pteropus_vampyrus
ENSMUSG00000025571	Tnrc6c	99	46.713	ENSPNYG00000014477	tnrc6c1	97	50.132	Pundamilia_nyererei
ENSMUSG00000025571	Tnrc6c	97	97.447	ENSRNOG00000022395	Tnrc6c	100	97.447	Rattus_norvegicus
ENSMUSG00000025571	Tnrc6c	100	88.503	ENSRBIG00000027777	TNRC6C	100	90.941	Rhinopithecus_bieti
ENSMUSG00000025571	Tnrc6c	100	88.559	ENSRROG00000042912	TNRC6C	100	91.001	Rhinopithecus_roxellana
ENSMUSG00000025571	Tnrc6c	100	88.351	ENSSBOG00000023981	TNRC6C	100	88.580	Saimiri_boliviensis_boliviensis
ENSMUSG00000025571	Tnrc6c	51	85.823	ENSSHAG00000018330	-	100	85.173	Sarcophilus_harrisii
ENSMUSG00000025571	Tnrc6c	65	55.889	ENSSFOG00015004735	-	99	60.574	Scleropages_formosus
ENSMUSG00000025571	Tnrc6c	99	47.611	ENSSMAG00000012761	tnrc6c1	99	50.405	Scophthalmus_maximus
ENSMUSG00000025571	Tnrc6c	99	49.585	ENSSDUG00000002366	tnrc6c1	98	49.946	Seriola_dumerili
ENSMUSG00000025571	Tnrc6c	91	49.675	ENSSLDG00000025613	tnrc6c1	97	50.171	Seriola_lalandi_dorsalis
ENSMUSG00000025571	Tnrc6c	91	89.655	ENSSARG00000006816	TNRC6C	91	89.427	Sorex_araneus
ENSMUSG00000025571	Tnrc6c	80	82.083	ENSSPUG00000007341	TNRC6C	98	82.292	Sphenodon_punctatus
ENSMUSG00000025571	Tnrc6c	76	53.715	ENSSPAG00000014977	tnrc6c1	98	48.148	Stegastes_partitus
ENSMUSG00000025571	Tnrc6c	97	84.410	ENSSSCG00000034373	TNRC6C	100	84.647	Sus_scrofa
ENSMUSG00000025571	Tnrc6c	100	86.445	ENSTGUG00000007733	TNRC6C	100	86.330	Taeniopygia_guttata
ENSMUSG00000025571	Tnrc6c	76	53.061	ENSTRUG00000011685	tnrc6c1	97	49.432	Takifugu_rubripes
ENSMUSG00000025571	Tnrc6c	95	54.618	ENSTNIG00000005273	tnrc6c1	100	59.666	Tetraodon_nigroviridis
ENSMUSG00000025571	Tnrc6c	62	90.234	ENSTBEG00000005046	TNRC6C	99	81.954	Tupaia_belangeri
ENSMUSG00000025571	Tnrc6c	100	88.857	ENSTTRG00000010828	TNRC6C	99	89.029	Tursiops_truncatus
ENSMUSG00000025571	Tnrc6c	99	87.557	ENSUMAG00000013614	TNRC6C	99	87.507	Ursus_maritimus
ENSMUSG00000025571	Tnrc6c	50	79.613	ENSVPAG00000006765	-	99	79.840	Vicugna_pacos
ENSMUSG00000025571	Tnrc6c	97	90.107	ENSVVUG00000015268	TNRC6C	100	90.284	Vulpes_vulpes
ENSMUSG00000025571	Tnrc6c	97	73.724	ENSXETG00000019470	tnrc6c	100	73.208	Xenopus_tropicalis
ENSMUSG00000025571	Tnrc6c	99	49.610	ENSXMAG00000025971	tnrc6c1	99	49.609	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000932	P-body	21873635.	IBA	Component
GO:0001706	endoderm formation	22187428.	IMP	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0006417	regulation of translation	-	IEA	Process
GO:0007492	endoderm development	22187428.	IMP	Process
GO:0031047	gene silencing by RNA	-	IEA	Process
GO:0035068	micro-ribonucleoprotein complex	21873635.	IBA	Component
GO:0035162	embryonic hemopoiesis	22187428.	IMP	Process
GO:0035195	gene silencing by miRNA	21873635.	IBA	Process
GO:0035195	gene silencing by miRNA	-	ISO	Process
GO:0035278	miRNA mediated inhibition of translation	-	IEA	Process
GO:0048568	embryonic organ development	22187428.	IMP	Process
GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	21873635.	IBA	Process
GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	-	ISO	Process
GO:0060964	regulation of gene silencing by miRNA	22187428.	IMP	Process
GO:1900153	positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	-	ISO	Process