EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000025781 (Gene tree)
Gene ID: 11949
Gene Symbol: Atp5c1
Alias: 1700094F02Rik|F1 gamma
Full Name: ATP synthase%2C H+ transporting%2C mitochondrial F1 complex%2C gamma polypeptide 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 24495
Position: chr2: 10056016-10080510
Accession: 1261437
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000145530	-	1000	-	ENSMUSP00000116508	188 (aa)	-	A2AKV3
ENSMUST00000026887	-	1060	XM_006497310	ENSMUSP00000026887	297 (aa)	XP_006497373	A2AKU9
ENSMUST00000153554	-	770	-	ENSMUSP00000116368	171 (aa)	-	A2AKV2
ENSMUST00000130067	-	690	-	ENSMUSP00000117182	101 (aa)	-	A2AKV0
ENSMUST00000114896	-	1735	-	ENSMUSP00000110546	274 (aa)	-	Q8C2Q8
ENSMUST00000114897	-	1166	-	ENSMUSP00000110547	298 (aa)	-	Q91VR2
ENSMUST00000139810	-	635	-	ENSMUSP00000123100	154 (aa)	-	A2AKV1

Gene Model

Click here to download ENSMUSG00000025781's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu00190	Oxidative phosphorylation	KEGG
mmu01100	Metabolic pathways	KEGG
mmu04714	Thermogenesis	KEGG
mmu05010	Alzheimer disease	KEGG
mmu05012	Parkinson disease	KEGG
mmu05016	Huntington disease	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000025781's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000025781	Atp5c1	99	58.545	FBgn0020235	ATPsyngamma	93	58.423	Drosophila_melanogaster
ENSMUSG00000025781	Atp5c1	99	40.925	YBR039W		90	41.053	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000275	mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	21873635.	IBA	Component
GO:0000275	mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	-	ISO	Component
GO:0005739	mitochondrion	14651853.18614015.	HDA	Component
GO:0005743	mitochondrial inner membrane	12865426.	HDA	Component
GO:0005743	mitochondrial inner membrane	-	ISO	Component
GO:0005753	mitochondrial proton-transporting ATP synthase complex	-	ISO	Component
GO:0006754	ATP biosynthetic process	21873635.	IBA	Process
GO:0006811	ion transport	-	IEA	Process
GO:0015986	ATP synthesis coupled proton transport	21873635.	IBA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016887	ATPase activity	-	ISO	Function
GO:0043209	myelin sheath	17634366.	HDA	Component
GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)	-	ISO	Component
GO:0046034	ATP metabolic process	-	ISO	Process
GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	-	IEA	Function
GO:0046961	proton-transporting ATPase activity, rotational mechanism	21873635.	IBA	Function