EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000025869 (Gene tree)
Gene ID: 28126
Gene Symbol: Nop16
Alias: D13Wsu177e
Full Name: NOP16 nucleolar protein
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 5906 bases
Position: chr13:54584185-54590090
Accession: 107862
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000026987	Nop16	PF09420.10	5.5e-23	1	2
ENSMUSP00000026987	Nop16	PF09420.10	5.5e-23	2	2
ENSMUSP00000122180	Nop16	PF09420.10	6.1e-23	1	2
ENSMUSP00000122180	Nop16	PF09420.10	6.1e-23	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000026987	-	1756	-	ENSMUSP00000026987	178 (aa)	-	Q9CPT5
ENSMUST00000148222	-	790	-	ENSMUSP00000122180	181 (aa)	-	D3Z7M5
ENSMUST00000149462	-	677	-	ENSMUSP00000114954	36 (aa)	-	D6RDE0

Gene Model

Click here to download ENSMUSG00000025869's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000025869's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000025869	Nop16	98	50.857	ENSAPOG00000010682	-	99	50.857	Acanthochromis_polyacanthus
ENSMUSG00000025869	Nop16	100	93.258	ENSAMEG00000006988	-	100	93.258	Ailuropoda_melanoleuca
ENSMUSG00000025869	Nop16	97	53.488	ENSACIG00000019263	nop16	97	54.070	Amphilophus_citrinellus
ENSMUSG00000025869	Nop16	98	51.429	ENSAOCG00000005504	nop16	99	51.429	Amphiprion_ocellaris
ENSMUSG00000025869	Nop16	98	51.429	ENSAPEG00000006605	nop16	99	51.429	Amphiprion_percula
ENSMUSG00000025869	Nop16	96	55.294	ENSATEG00000014089	nop16	95	55.294	Anabas_testudineus
ENSMUSG00000025869	Nop16	99	71.023	ENSACAG00000006333	-	99	71.023	Anolis_carolinensis
ENSMUSG00000025869	Nop16	100	81.461	ENSANAG00000027410	-	100	81.461	Aotus_nancymaae
ENSMUSG00000025869	Nop16	100	87.640	ENSANAG00000015743	-	100	87.640	Aotus_nancymaae
ENSMUSG00000025869	Nop16	96	55.294	ENSACLG00000025227	nop16	95	55.294	Astatotilapia_calliptera
ENSMUSG00000025869	Nop16	94	46.108	ENSAMXG00000006843	nop16	96	45.562	Astyanax_mexicanus
ENSMUSG00000025869	Nop16	100	92.135	ENSBTAG00000010734	NOP16	100	92.135	Bos_taurus
ENSMUSG00000025869	Nop16	66	31.655	WBGene00013958	ZK265.6	80	30.625	Caenorhabditis_elegans
ENSMUSG00000025869	Nop16	100	91.573	ENSCAFG00000016694	NOP16	100	91.573	Canis_familiaris
ENSMUSG00000025869	Nop16	99	92.045	ENSCAFG00020011505	-	98	89.189	Canis_lupus_dingo
ENSMUSG00000025869	Nop16	100	92.135	ENSCHIG00000022082	-	100	92.135	Capra_hircus
ENSMUSG00000025869	Nop16	100	73.596	ENSTSYG00000032690	-	100	73.596	Carlito_syrichta
ENSMUSG00000025869	Nop16	99	91.525	ENSTSYG00000030409	-	99	91.525	Carlito_syrichta
ENSMUSG00000025869	Nop16	100	90.449	ENSCPOG00000026072	-	100	90.449	Cavia_porcellus
ENSMUSG00000025869	Nop16	96	82.941	ENSCCAG00000026775	-	100	81.503	Cebus_capucinus
ENSMUSG00000025869	Nop16	100	89.888	ENSCLAG00000015405	-	100	89.888	Chinchilla_lanigera
ENSMUSG00000025869	Nop16	100	91.011	ENSCSAG00000009400	-	100	91.011	Chlorocebus_sabaeus
ENSMUSG00000025869	Nop16	99	74.157	ENSCPBG00000022647	-	99	74.157	Chrysemys_picta_bellii
ENSMUSG00000025869	Nop16	100	44.505	ENSCING00000006179	-	98	44.505	Ciona_intestinalis
ENSMUSG00000025869	Nop16	95	41.176	ENSCSAVG00000000269	-	93	41.176	Ciona_savignyi
ENSMUSG00000025869	Nop16	100	92.697	ENSCGRG00001004259	Nop16	100	92.697	Cricetulus_griseus_chok1gshd
ENSMUSG00000025869	Nop16	100	92.697	ENSCGRG00000010975	Nop16	100	92.697	Cricetulus_griseus_crigri
ENSMUSG00000025869	Nop16	97	50.581	ENSCSEG00000020523	nop16	98	50.581	Cynoglossus_semilaevis
ENSMUSG00000025869	Nop16	97	52.326	ENSCVAG00000020140	nop16	97	52.326	Cyprinodon_variegatus
ENSMUSG00000025869	Nop16	98	50.847	ENSDARG00000044402	nop16	99	50.847	Danio_rerio
ENSMUSG00000025869	Nop16	100	91.011	ENSDNOG00000042890	-	100	91.011	Dasypus_novemcinctus
ENSMUSG00000025869	Nop16	100	90.449	ENSDORG00000008872	Nop16	100	90.449	Dipodomys_ordii
ENSMUSG00000025869	Nop16	93	43.605	ENSEBUG00000011196	nop16	95	43.605	Eptatretus_burgeri
ENSMUSG00000025869	Nop16	100	92.697	ENSEASG00005011988	-	100	92.697	Equus_asinus_asinus
ENSMUSG00000025869	Nop16	100	93.820	ENSECAG00000021354	NOP16	100	93.820	Equus_caballus
ENSMUSG00000025869	Nop16	98	54.857	ENSELUG00000000401	nop16	98	54.857	Esox_lucius
ENSMUSG00000025869	Nop16	100	93.258	ENSFCAG00000025473	-	100	93.258	Felis_catus
ENSMUSG00000025869	Nop16	99	68.156	ENSFALG00000008553	-	99	68.156	Ficedula_albicollis
ENSMUSG00000025869	Nop16	100	89.888	ENSFDAG00000000193	-	100	89.888	Fukomys_damarensis
ENSMUSG00000025869	Nop16	96	54.706	ENSFHEG00000016452	nop16	95	54.706	Fundulus_heteroclitus
ENSMUSG00000025869	Nop16	99	72.626	ENSGALG00000003355	-	99	72.626	Gallus_gallus
ENSMUSG00000025869	Nop16	83	53.741	ENSGAFG00000011616	nop16	79	53.741	Gambusia_affinis
ENSMUSG00000025869	Nop16	97	51.744	ENSGACG00000020819	-	98	52.353	Gasterosteus_aculeatus
ENSMUSG00000025869	Nop16	96	48.824	ENSGACG00000020810	nop16	100	48.824	Gasterosteus_aculeatus
ENSMUSG00000025869	Nop16	96	52.941	ENSGACG00000002618	-	98	52.941	Gasterosteus_aculeatus
ENSMUSG00000025869	Nop16	97	51.149	ENSGACG00000003122	-	99	53.846	Gasterosteus_aculeatus
ENSMUSG00000025869	Nop16	96	54.706	ENSHBUG00000013527	nop16	95	54.706	Haplochromis_burtoni
ENSMUSG00000025869	Nop16	100	91.573	ENSHGLG00000013437	NOP16	100	91.573	Heterocephalus_glaber_female
ENSMUSG00000025869	Nop16	100	91.573	ENSHGLG00100011375	NOP16	100	91.573	Heterocephalus_glaber_male
ENSMUSG00000025869	Nop16	97	50.575	ENSHCOG00000019999	nop16	99	50.568	Hippocampus_comes
ENSMUSG00000025869	Nop16	96	48.235	ENSIPUG00000006682	nop16	96	48.235	Ictalurus_punctatus
ENSMUSG00000025869	Nop16	100	92.222	ENSSTOG00000004869	-	100	92.222	Ictidomys_tridecemlineatus
ENSMUSG00000025869	Nop16	100	93.258	ENSJJAG00000017655	Nop16	100	93.258	Jaculus_jaculus
ENSMUSG00000025869	Nop16	96	54.706	ENSKMAG00000006164	nop16	95	54.706	Kryptolebias_marmoratus
ENSMUSG00000025869	Nop16	98	52.874	ENSLBEG00000018355	nop16	80	52.874	Labrus_bergylta
ENSMUSG00000025869	Nop16	99	63.842	ENSLACG00000014884	nop16	100	63.842	Latimeria_chalumnae
ENSMUSG00000025869	Nop16	99	55.367	ENSLOCG00000012348	nop16	98	55.367	Lepisosteus_oculatus
ENSMUSG00000025869	Nop16	100	92.135	ENSLAFG00000017886	-	100	92.135	Loxodonta_africana
ENSMUSG00000025869	Nop16	97	56.395	ENSMAMG00000021868	nop16	97	56.395	Mastacembelus_armatus
ENSMUSG00000025869	Nop16	96	55.294	ENSMZEG00005012112	nop16	95	55.294	Maylandia_zebra
ENSMUSG00000025869	Nop16	57	68.317	ENSMGAG00000004726	-	99	68.317	Meleagris_gallopavo
ENSMUSG00000025869	Nop16	94	85.119	ENSMAUG00000015569	-	99	85.119	Mesocricetus_auratus
ENSMUSG00000025869	Nop16	60	93.396	ENSMAUG00000009852	-	100	93.396	Mesocricetus_auratus
ENSMUSG00000025869	Nop16	100	94.944	ENSMOCG00000020788	Nop16	100	94.944	Microtus_ochrogaster
ENSMUSG00000025869	Nop16	96	53.529	ENSMMOG00000016054	nop16	99	53.529	Mola_mola
ENSMUSG00000025869	Nop16	100	79.444	ENSMODG00000005214	-	100	79.444	Monodelphis_domestica
ENSMUSG00000025869	Nop16	96	52.047	ENSMALG00000021263	nop16	95	52.047	Monopterus_albus
ENSMUSG00000025869	Nop16	100	99.438	MGP_CAROLIEiJ_G0018538	Nop16	100	99.438	Mus_caroli
ENSMUSG00000025869	Nop16	100	97.191	MGP_PahariEiJ_G0019603	Nop16	100	97.191	Mus_pahari
ENSMUSG00000025869	Nop16	100	99.438	MGP_SPRETEiJ_G0019418	Nop16	100	99.438	Mus_spretus
ENSMUSG00000025869	Nop16	100	93.820	ENSMPUG00000012552	-	100	93.820	Mustela_putorius_furo
ENSMUSG00000025869	Nop16	100	91.573	ENSMPUG00000016964	-	100	91.573	Mustela_putorius_furo
ENSMUSG00000025869	Nop16	99	90.960	ENSMLUG00000003504	-	99	90.960	Myotis_lucifugus
ENSMUSG00000025869	Nop16	100	92.135	ENSNGAG00000018045	Nop16	100	92.135	Nannospalax_galili
ENSMUSG00000025869	Nop16	96	54.118	ENSNBRG00000015181	nop16	96	54.118	Neolamprologus_brichardi
ENSMUSG00000025869	Nop16	100	91.011	ENSODEG00000009586	-	100	91.011	Octodon_degus
ENSMUSG00000025869	Nop16	96	57.059	ENSONIG00000016417	nop16	95	57.059	Oreochromis_niloticus
ENSMUSG00000025869	Nop16	100	91.011	ENSOCUG00000013171	-	100	91.011	Oryctolagus_cuniculus
ENSMUSG00000025869	Nop16	96	54.706	ENSORLG00000026611	nop16	95	54.706	Oryzias_latipes
ENSMUSG00000025869	Nop16	96	58.235	ENSOMEG00000023001	nop16	95	58.235	Oryzias_melastigma
ENSMUSG00000025869	Nop16	100	93.820	ENSOGAG00000000824	-	100	93.820	Otolemur_garnettii
ENSMUSG00000025869	Nop16	100	92.135	ENSOARG00000002165	-	100	92.135	Ovis_aries
ENSMUSG00000025869	Nop16	100	91.011	ENSPPAG00000035473	-	100	91.011	Pan_paniscus
ENSMUSG00000025869	Nop16	100	93.258	ENSPPRG00000016600	-	100	93.258	Panthera_pardus
ENSMUSG00000025869	Nop16	100	92.697	ENSPTIG00000011708	-	100	92.697	Panthera_tigris_altaica
ENSMUSG00000025869	Nop16	100	91.011	ENSPTRG00000017560	NOP16	100	91.011	Pan_troglodytes
ENSMUSG00000025869	Nop16	99	53.107	ENSPKIG00000009587	nop16	99	53.107	Paramormyrops_kingsleyae
ENSMUSG00000025869	Nop16	79	66.197	ENSPSIG00000013546	-	99	66.197	Pelodiscus_sinensis
ENSMUSG00000025869	Nop16	94	54.438	ENSPMGG00000003443	nop16	98	54.438	Periophthalmus_magnuspinnatus
ENSMUSG00000025869	Nop16	100	95.506	ENSPEMG00000020268	Nop16	100	95.506	Peromyscus_maniculatus_bairdii
ENSMUSG00000025869	Nop16	100	82.222	ENSPCIG00000009782	-	100	82.222	Phascolarctos_cinereus
ENSMUSG00000025869	Nop16	96	52.353	ENSPFOG00000010549	nop16	95	52.353	Poecilia_formosa
ENSMUSG00000025869	Nop16	78	51.079	ENSPLAG00000007124	nop16	71	51.079	Poecilia_latipinna
ENSMUSG00000025869	Nop16	96	52.353	ENSPMEG00000008611	nop16	95	52.353	Poecilia_mexicana
ENSMUSG00000025869	Nop16	97	51.744	ENSPREG00000012940	nop16	97	52.326	Poecilia_reticulata
ENSMUSG00000025869	Nop16	99	92.090	ENSPPYG00000016070	-	99	92.090	Pongo_abelii
ENSMUSG00000025869	Nop16	96	55.294	ENSPNYG00000013529	nop16	95	55.294	Pundamilia_nyererei
ENSMUSG00000025869	Nop16	93	49.112	ENSPNAG00000016233	nop16	95	49.112	Pygocentrus_nattereri
ENSMUSG00000025869	Nop16	100	96.067	ENSRNOG00000017284	Nop16	100	96.067	Rattus_norvegicus
ENSMUSG00000025869	Nop16	100	81.564	ENSSHAG00000001724	-	100	81.564	Sarcophilus_harrisii
ENSMUSG00000025869	Nop16	92	52.761	ENSSFOG00015010537	nop16	79	52.000	Scleropages_formosus
ENSMUSG00000025869	Nop16	96	54.118	ENSSDUG00000022349	nop16	95	54.118	Seriola_dumerili
ENSMUSG00000025869	Nop16	96	54.706	ENSSLDG00000025171	nop16	95	54.706	Seriola_lalandi_dorsalis
ENSMUSG00000025869	Nop16	73	77.692	ENSSARG00000006699	-	61	77.692	Sorex_araneus
ENSMUSG00000025869	Nop16	99	70.455	ENSSPUG00000006508	-	98	70.455	Sphenodon_punctatus
ENSMUSG00000025869	Nop16	96	54.118	ENSSPAG00000011772	nop16	95	54.118	Stegastes_partitus
ENSMUSG00000025869	Nop16	100	91.573	ENSSSCG00000029577	-	100	91.573	Sus_scrofa
ENSMUSG00000025869	Nop16	99	72.067	ENSTGUG00000000543	-	99	72.067	Taeniopygia_guttata
ENSMUSG00000025869	Nop16	96	53.216	ENSTRUG00000020255	nop16	95	53.216	Takifugu_rubripes
ENSMUSG00000025869	Nop16	96	54.386	ENSTNIG00000007616	nop16	95	54.386	Tetraodon_nigroviridis
ENSMUSG00000025869	Nop16	100	92.697	ENSUAMG00000005139	-	100	92.697	Ursus_americanus
ENSMUSG00000025869	Nop16	99	92.614	ENSVVUG00000001697	-	98	89.730	Vulpes_vulpes
ENSMUSG00000025869	Nop16	92	58.282	ENSXETG00000022342	nop16	95	58.282	Xenopus_tropicalis
ENSMUSG00000025869	Nop16	96	53.801	ENSXCOG00000018829	nop16	97	53.801	Xiphophorus_couchianus
ENSMUSG00000025869	Nop16	96	54.386	ENSXMAG00000029113	nop16	95	54.386	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0042273	ribosomal large subunit biogenesis	21873635.	IBA	Process
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component