EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000025982 (Gene tree)
Gene ID
81898
Gene Symbol
Sf3b1
Alias
2810001M05Rik|Prp10|SAP155|SF3b155|Targ4
Full Name
splicing factor 3b%2C subunit 1
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Minus strand
Length
42313 bases
Position
chr1:54985169-55027481
Accession
1932339
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000027127SF3b1PF08920.109.6e-4711
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27768875High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem CellsnIC & mESC2016.09He CDOI: 10.1016/j.molcel.2016.09.034
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseRBDmap & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000187500-3403--- (aa)--
ENSMUST00000027127-6195XM_017312972ENSMUSP000000271271304 (aa)XP_017168461G5E866
ENSMUST00000190175-3350--- (aa)--
ENSMUST00000189051-804--- (aa)--
ENSMUST00000191303-600-ENSMUSP00000139469144 (aa)-A0A087WNS2
ENSMUST00000185429-3589--- (aa)--
ENSMUST00000188419-711--- (aa)--
ENSMUST00000188859-628--- (aa)--
Gene Model
Click here to download ENSMUSG00000025982's gene model file
Pathways
Pathway IDPathway NameSource
mmu03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000025982's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000025982Sf3b1100100.000ENSG00000115524SF3B1100100.000Homo_sapiens
ENSMUSG00000025982Sf3b110093.622ENSAPOG00000011894sf3b110093.622Acanthochromis_polyacanthus
ENSMUSG00000025982Sf3b19999.923ENSAMEG00000013809SF3B19999.923Ailuropoda_melanoleuca
ENSMUSG00000025982Sf3b110093.216ENSACIG00000020910sf3b19793.064Amphilophus_citrinellus
ENSMUSG00000025982Sf3b110093.622ENSAOCG00000004478sf3b110093.622Amphiprion_ocellaris
ENSMUSG00000025982Sf3b110093.622ENSAPEG00000012937sf3b110093.622Amphiprion_percula
ENSMUSG00000025982Sf3b110093.693ENSATEG00000020435sf3b110093.693Anabas_testudineus
ENSMUSG00000025982Sf3b19999.382ENSAPLG00000003993SF3B19999.382Anas_platyrhynchos
ENSMUSG00000025982Sf3b110098.850ENSACAG00000009612SF3B110098.850Anolis_carolinensis
ENSMUSG00000025982Sf3b1100100.000ENSANAG00000021577SF3B1100100.000Aotus_nancymaae
ENSMUSG00000025982Sf3b110092.857ENSACLG00000023470sf3b110092.705Astatotilapia_calliptera
ENSMUSG00000025982Sf3b110094.149ENSAMXG00000002219sf3b110093.997Astyanax_mexicanus
ENSMUSG00000025982Sf3b110099.923ENSBTAG00000008915SF3B110099.923Bos_taurus
ENSMUSG00000025982Sf3b19866.440WBGene00011605sftb-19866.516Caenorhabditis_elegans
ENSMUSG00000025982Sf3b1100100.000ENSCJAG00000003902SF3B1100100.000Callithrix_jacchus
ENSMUSG00000025982Sf3b1100100.000ENSCAFG00000010826SF3B1100100.000Canis_familiaris
ENSMUSG00000025982Sf3b1100100.000ENSCAFG00020004750SF3B1100100.000Canis_lupus_dingo
ENSMUSG00000025982Sf3b110099.923ENSCHIG00000015226SF3B110099.923Capra_hircus
ENSMUSG00000025982Sf3b110099.923ENSTSYG00000009214SF3B110099.923Carlito_syrichta
ENSMUSG00000025982Sf3b19999.846ENSCAPG00000006547SF3B19999.846Cavia_aperea
ENSMUSG00000025982Sf3b199100.000ENSCPOG00000009353SF3B1100100.000Cavia_porcellus
ENSMUSG00000025982Sf3b1100100.000ENSCCAG00000020506SF3B1100100.000Cebus_capucinus
ENSMUSG00000025982Sf3b1100100.000ENSCATG00000035735SF3B1100100.000Cercocebus_atys
ENSMUSG00000025982Sf3b199100.000ENSCLAG00000014767SF3B199100.000Chinchilla_lanigera
ENSMUSG00000025982Sf3b1100100.000ENSCSAG00000011505SF3B1100100.000Chlorocebus_sabaeus
ENSMUSG00000025982Sf3b17698.462ENSCHOG00000009860SF3B17698.438Choloepus_hoffmanni
ENSMUSG00000025982Sf3b110099.233ENSCPBG00000021902SF3B110099.233Chrysemys_picta_bellii
ENSMUSG00000025982Sf3b16878.060ENSCING00000002558-9978.771Ciona_intestinalis
ENSMUSG00000025982Sf3b19979.864ENSCSAVG00000002559-9979.470Ciona_savignyi
ENSMUSG00000025982Sf3b1100100.000ENSCANG00000029415SF3B1100100.000Colobus_angolensis_palliatus
ENSMUSG00000025982Sf3b1100100.000ENSCGRG00001016990Sf3b1100100.000Cricetulus_griseus_chok1gshd
ENSMUSG00000025982Sf3b1100100.000ENSCGRG00000005301Sf3b1100100.000Cricetulus_griseus_crigri
ENSMUSG00000025982Sf3b110090.015ENSCSEG00000003860sf3b110089.939Cynoglossus_semilaevis
ENSMUSG00000025982Sf3b19693.676ENSCVAG00000003680sf3b19993.676Cyprinodon_variegatus
ENSMUSG00000025982Sf3b110093.470ENSDARG00000056138sf3b110093.394Danio_rerio
ENSMUSG00000025982Sf3b110099.923ENSDNOG00000011754SF3B110099.923Dasypus_novemcinctus
ENSMUSG00000025982Sf3b19997.297ENSDORG00000002399Sf3b110097.297Dipodomys_ordii
ENSMUSG00000025982Sf3b110076.618FBgn0031266Sf3b110076.618Drosophila_melanogaster
ENSMUSG00000025982Sf3b18399.351ENSETEG00000009188SF3B110099.351Echinops_telfairi
ENSMUSG00000025982Sf3b19987.270ENSEBUG00000004325sf3b110090.191Eptatretus_burgeri
ENSMUSG00000025982Sf3b110099.923ENSEASG00005020159SF3B19899.923Equus_asinus_asinus
ENSMUSG00000025982Sf3b110099.923ENSECAG00000021657SF3B19899.923Equus_caballus
ENSMUSG00000025982Sf3b187100.000ENSEEUG00000000836SF3B181100.000Erinaceus_europaeus
ENSMUSG00000025982Sf3b110093.132ENSELUG00000005977sf3b19892.981Esox_lucius
ENSMUSG00000025982Sf3b1100100.000ENSFCAG00000005038SF3B1100100.000Felis_catus
ENSMUSG00000025982Sf3b19999.459ENSFALG00000004281SF3B19999.459Ficedula_albicollis
ENSMUSG00000025982Sf3b1100100.000ENSFDAG00000017510SF3B1100100.000Fukomys_damarensis
ENSMUSG00000025982Sf3b110092.938ENSFHEG00000014333sf3b110092.938Fundulus_heteroclitus
ENSMUSG00000025982Sf3b110093.531ENSGMOG00000006773sf3b110093.531Gadus_morhua
ENSMUSG00000025982Sf3b110099.387ENSGALG00000008038SF3B110099.387Gallus_gallus
ENSMUSG00000025982Sf3b110091.915ENSGAFG00000000704sf3b19993.441Gambusia_affinis
ENSMUSG00000025982Sf3b110093.674ENSGACG00000008839sf3b110093.674Gasterosteus_aculeatus
ENSMUSG00000025982Sf3b110098.553ENSGAGG00000017478SF3B110098.553Gopherus_agassizii
ENSMUSG00000025982Sf3b19993.170ENSGGOG00000009264SF3B19994.231Gorilla_gorilla
ENSMUSG00000025982Sf3b19992.922ENSHBUG00000007705sf3b19992.770Haplochromis_burtoni
ENSMUSG00000025982Sf3b199100.000ENSHGLG00000008285-99100.000Heterocephalus_glaber_female
ENSMUSG00000025982Sf3b19997.992ENSHGLG00100005535-9997.992Heterocephalus_glaber_male
ENSMUSG00000025982Sf3b110092.976ENSHCOG00000016775sf3b110092.825Hippocampus_comes
ENSMUSG00000025982Sf3b110093.997ENSIPUG00000013171sf3b110093.997Ictalurus_punctatus
ENSMUSG00000025982Sf3b1100100.000ENSSTOG00000011034SF3B1100100.000Ictidomys_tridecemlineatus
ENSMUSG00000025982Sf3b19999.922ENSJJAG00000010903Sf3b19999.922Jaculus_jaculus
ENSMUSG00000025982Sf3b110093.106ENSKMAG00000004009sf3b110093.030Kryptolebias_marmoratus
ENSMUSG00000025982Sf3b110093.588ENSLBEG00000022208sf3b110093.435Labrus_bergylta
ENSMUSG00000025982Sf3b19992.490ENSLACG00000014832SF3B19992.490Latimeria_chalumnae
ENSMUSG00000025982Sf3b110094.917ENSLOCG00000003899sf3b110094.765Lepisosteus_oculatus
ENSMUSG00000025982Sf3b1100100.000ENSLAFG00000001956SF3B1100100.000Loxodonta_africana
ENSMUSG00000025982Sf3b199100.000ENSMMUG00000022430SF3B199100.000Macaca_mulatta
ENSMUSG00000025982Sf3b1100100.000ENSMNEG00000042333SF3B1100100.000Macaca_nemestrina
ENSMUSG00000025982Sf3b19593.478ENSMLEG00000026141SF3B19994.027Mandrillus_leucophaeus
ENSMUSG00000025982Sf3b110093.617ENSMAMG00000010241sf3b110093.617Mastacembelus_armatus
ENSMUSG00000025982Sf3b110092.857ENSMZEG00005021254sf3b110092.705Maylandia_zebra
ENSMUSG00000025982Sf3b19998.764ENSMGAG00000007017SF3B19998.764Meleagris_gallopavo
ENSMUSG00000025982Sf3b19995.753ENSMAUG00000009071Sf3b19995.753Mesocricetus_auratus
ENSMUSG00000025982Sf3b110099.923ENSMICG00000013879SF3B110099.923Microcebus_murinus
ENSMUSG00000025982Sf3b19995.525ENSMOCG00000000455Sf3b19995.525Microtus_ochrogaster
ENSMUSG00000025982Sf3b18493.059ENSMMOG00000000475sf3b110093.059Mola_mola
ENSMUSG00000025982Sf3b110099.310ENSMODG00000012275SF3B110099.310Monodelphis_domestica
ENSMUSG00000025982Sf3b110093.541ENSMALG00000017211sf3b110093.541Monopterus_albus
ENSMUSG00000025982Sf3b1100100.000MGP_CAROLIEiJ_G0014141Sf3b1100100.000Mus_caroli
ENSMUSG00000025982Sf3b1100100.000MGP_SPRETEiJ_G0014947Sf3b1100100.000Mus_spretus
ENSMUSG00000025982Sf3b1100100.000ENSMPUG00000007799SF3B1100100.000Mustela_putorius_furo
ENSMUSG00000025982Sf3b110098.773ENSMLUG00000000840SF3B110098.773Myotis_lucifugus
ENSMUSG00000025982Sf3b19999.692ENSNGAG00000021884-10099.692Nannospalax_galili
ENSMUSG00000025982Sf3b110089.109ENSNBRG00000015816sf3b110089.109Neolamprologus_brichardi
ENSMUSG00000025982Sf3b1100100.000ENSNLEG00000006861SF3B1100100.000Nomascus_leucogenys
ENSMUSG00000025982Sf3b170100.000ENSMEUG00000015848-67100.000Notamacropus_eugenii
ENSMUSG00000025982Sf3b110088.113ENSOPRG00000008596SF3B110088.113Ochotona_princeps
ENSMUSG00000025982Sf3b1100100.000ENSODEG00000011153-100100.000Octodon_degus
ENSMUSG00000025982Sf3b110092.857ENSONIG00000013758sf3b110092.705Oreochromis_niloticus
ENSMUSG00000025982Sf3b18398.985ENSOCUG00000012722-9698.985Oryctolagus_cuniculus
ENSMUSG00000025982Sf3b110093.389ENSORLG00000020219sf3b110093.389Oryzias_latipes
ENSMUSG00000025982Sf3b110093.389ENSORLG00020001746sf3b110093.389Oryzias_latipes_hni
ENSMUSG00000025982Sf3b16490.952ENSORLG00015001759sf3b19890.952Oryzias_latipes_hsok
ENSMUSG00000025982Sf3b110093.394ENSOMEG00000019231sf3b110093.394Oryzias_melastigma
ENSMUSG00000025982Sf3b110099.923ENSOARG00000015374SF3B110099.923Ovis_aries
ENSMUSG00000025982Sf3b1100100.000ENSPPAG00000035007SF3B1100100.000Pan_paniscus
ENSMUSG00000025982Sf3b1100100.000ENSPPRG00000009090SF3B1100100.000Panthera_pardus
ENSMUSG00000025982Sf3b1100100.000ENSPTIG00000021557SF3B1100100.000Panthera_tigris_altaica
ENSMUSG00000025982Sf3b19991.455ENSPTRG00000012771SF3B19991.455Pan_troglodytes
ENSMUSG00000025982Sf3b1100100.000ENSPANG00000013417SF3B1100100.000Papio_anubis
ENSMUSG00000025982Sf3b110095.053ENSPKIG00000000784sf3b110094.901Paramormyrops_kingsleyae
ENSMUSG00000025982Sf3b19997.991ENSPSIG00000017222SF3B19897.991Pelodiscus_sinensis
ENSMUSG00000025982Sf3b19094.019ENSPMGG00000004330sf3b19993.850Periophthalmus_magnuspinnatus
ENSMUSG00000025982Sf3b199100.000ENSPEMG00000010699Sf3b1100100.000Peromyscus_maniculatus_bairdii
ENSMUSG00000025982Sf3b110090.053ENSPMAG00000001311sf3b110090.205Petromyzon_marinus
ENSMUSG00000025982Sf3b110099.233ENSPCIG00000010642SF3B110099.233Phascolarctos_cinereus
ENSMUSG00000025982Sf3b110093.323ENSPFOG00000000073sf3b110093.323Poecilia_formosa
ENSMUSG00000025982Sf3b110093.394ENSPLAG00000002293sf3b110093.394Poecilia_latipinna
ENSMUSG00000025982Sf3b110093.394ENSPMEG00000000446sf3b19893.394Poecilia_mexicana
ENSMUSG00000025982Sf3b110093.470ENSPREG00000019652sf3b110093.470Poecilia_reticulata
ENSMUSG00000025982Sf3b110098.814ENSPPYG00000013044SF3B19698.814Pongo_abelii
ENSMUSG00000025982Sf3b110099.847ENSPCAG00000009292SF3B110099.847Procavia_capensis
ENSMUSG00000025982Sf3b110099.923ENSPCOG00000024074SF3B110099.923Propithecus_coquereli
ENSMUSG00000025982Sf3b1100100.000ENSPVAG00000008302SF3B1100100.000Pteropus_vampyrus
ENSMUSG00000025982Sf3b110092.781ENSPNYG00000014939sf3b110092.629Pundamilia_nyererei
ENSMUSG00000025982Sf3b110093.997ENSPNAG00000008288sf3b110093.997Pygocentrus_nattereri
ENSMUSG00000025982Sf3b1100100.000ENSRNOG00000013516Sf3b1100100.000Rattus_norvegicus
ENSMUSG00000025982Sf3b19996.237ENSRBIG00000026096SF3B110096.237Rhinopithecus_bieti
ENSMUSG00000025982Sf3b1100100.000ENSRROG00000031308SF3B1100100.000Rhinopithecus_roxellana
ENSMUSG00000025982Sf3b1100100.000ENSSBOG00000020080SF3B1100100.000Saimiri_boliviensis_boliviensis
ENSMUSG00000025982Sf3b110099.310ENSSHAG00000017564SF3B110099.310Sarcophilus_harrisii
ENSMUSG00000025982Sf3b110094.609ENSSFOG00015021535sf3b110094.761Scleropages_formosus
ENSMUSG00000025982Sf3b19992.955ENSSMAG00000013977sf3b19992.803Scophthalmus_maximus
ENSMUSG00000025982Sf3b110093.389ENSSDUG00000017422sf3b110093.389Seriola_dumerili
ENSMUSG00000025982Sf3b110093.313ENSSLDG00000019495sf3b110093.313Seriola_lalandi_dorsalis
ENSMUSG00000025982Sf3b176100.000ENSSARG00000007016SF3B176100.000Sorex_araneus
ENSMUSG00000025982Sf3b110099.080ENSSPUG00000000410SF3B110099.080Sphenodon_punctatus
ENSMUSG00000025982Sf3b110093.693ENSSPAG00000010451sf3b19993.693Stegastes_partitus
ENSMUSG00000025982Sf3b19199.579ENSSSCG00000016075SF3B1100100.000Sus_scrofa
ENSMUSG00000025982Sf3b110099.310ENSTGUG00000010553SF3B110099.310Taeniopygia_guttata
ENSMUSG00000025982Sf3b110093.389ENSTRUG00000015534sf3b110093.237Takifugu_rubripes
ENSMUSG00000025982Sf3b188100.000ENSTBEG00000008714SF3B193100.000Tupaia_belangeri
ENSMUSG00000025982Sf3b19294.185ENSTTRG00000003414SF3B19294.185Tursiops_truncatus
ENSMUSG00000025982Sf3b19495.688ENSUAMG00000018506SF3B19999.190Ursus_americanus
ENSMUSG00000025982Sf3b1100100.000ENSUMAG00000020945SF3B1100100.000Ursus_maritimus
ENSMUSG00000025982Sf3b110091.871ENSVPAG00000005798SF3B110091.871Vicugna_pacos
ENSMUSG00000025982Sf3b1100100.000ENSVVUG00000025948SF3B195100.000Vulpes_vulpes
ENSMUSG00000025982Sf3b110096.628ENSXETG00000013339sf3b110096.628Xenopus_tropicalis
ENSMUSG00000025982Sf3b110089.908ENSXCOG00000018086sf3b110089.794Xiphophorus_couchianus
ENSMUSG00000025982Sf3b110093.394ENSXMAG00000007369sf3b110093.692Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000245spliceosomal complex assembly-IEAProcess
GO:0000398mRNA splicing, via spliceosome23211737.IMPProcess
GO:0000398mRNA splicing, via spliceosome11252167.ISOProcess
GO:0000785chromatin20153721.IDAComponent
GO:0001825blastocyst formation23211737.27869233.IMPProcess
GO:0003682chromatin binding15741318.20153721.IDAFunction
GO:0003723RNA binding-IEAFunction
GO:0003729mRNA binding21873635.IBAFunction
GO:0005515protein binding15741318.IPIFunction
GO:0005634nucleus20153721.23211737.IDAComponent
GO:0005634nucleus-ISOComponent
GO:0005634nucleus18559850.ISSComponent
GO:0005681spliceosomal complex-IEAComponent
GO:0005686U2 snRNP21873635.IBAComponent
GO:0005686U2 snRNP11252167.ISOComponent
GO:0005689U12-type spliceosomal complex21873635.IBAComponent
GO:0005689U12-type spliceosomal complex-ISOComponent
GO:0006397mRNA processing-IEAProcess
GO:0008380RNA splicing-IEAProcess
GO:0009952anterior/posterior pattern specification15741318.IGIProcess
GO:0016363nuclear matrix20153721.IDAComponent
GO:0016607nuclear speck-ISOComponent
GO:0030532small nuclear ribonucleoprotein complex20153721.IDAComponent
GO:0034693U11/U12 snRNP11252167.ISOComponent
GO:0071004U2-type prespliceosome21873635.IBAComponent
GO:0071005U2-type precatalytic spliceosome-ISOComponent
GO:0071013catalytic step 2 spliceosome21873635.IBAComponent
GO:0071013catalytic step 2 spliceosome-ISOComponent

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