EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000026021 (Gene tree)
Gene ID: 22218
Gene Symbol: Sumo1
Alias: PIC1|SENTRIN|Smt3C|Ubl1
Full Name: small ubiquitin-like modifier 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 84277
Position: chr1: 59586558-59670834
Accession: 1197010
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000123857	-	829	-	-	- (aa)	-	-
ENSMUST00000091374	-	1215	-	ENSMUSP00000088935	101 (aa)	-	P63166
ENSMUST00000191158	-	528	-	-	- (aa)	-	-
ENSMUST00000185265	-	532	-	ENSMUSP00000140729	75 (aa)	-	A0A087WRQ4

Gene Model

Click here to download ENSMUSG00000026021's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG
mmu05418	Fluid shear stress and atherosclerosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000026021's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000026021	Sumo1	100	100.000	ENSG00000116030	SUMO1	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000792	heterochromatin	-	ISO	Component
GO:0001222	transcription corepressor binding	-	ISO	Function
GO:0001650	fibrillar center	-	ISO	Component
GO:0001741	XY body	25634095.	IDA	Component
GO:0001741	XY body	-	ISO	Component
GO:0005515	protein binding	11591653.15767674.17159996.17187077.18682553.21084637.24379443.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	15767674.21931855.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006355	regulation of transcription, DNA-templated	15767674.	IDA	Process
GO:0008022	protein C-terminus binding	-	ISO	Function
GO:0008076	voltage-gated potassium channel complex	-	ISO	Component
GO:0008134	transcription factor binding	15023536.	IMP	Function
GO:0008134	transcription factor binding	15767674.	IPI	Function
GO:0015459	potassium channel regulator activity	-	ISO	Function
GO:0016020	membrane	-	IEA	Component
GO:0016604	nuclear body	18681895.	IDA	Component
GO:0016604	nuclear body	-	ISO	Component
GO:0016605	PML body	21873635.	IBA	Component
GO:0016605	PML body	-	ISO	Component
GO:0016605	PML body	-	ISO	Component
GO:0016605	PML body	14555234.	TAS	Component
GO:0016925	protein sumoylation	21873635.	IBA	Process
GO:0016925	protein sumoylation	15767674.18644859.	IDA	Process
GO:0016925	protein sumoylation	15023536.19033381.	IMP	Process
GO:0016925	protein sumoylation	-	ISO	Process
GO:0019899	enzyme binding	-	ISO	Function
GO:0030425	dendrite	-	ISO	Component
GO:0030578	PML body organization	19033381.	IMP	Process
GO:0030674	protein binding, bridging	-	ISO	Function
GO:0031334	positive regulation of protein complex assembly	-	ISO	Process
GO:0031386	protein tag	21873635.	IBA	Function
GO:0031510	SUMO activating enzyme complex	-	ISO	Component
GO:0031625	ubiquitin protein ligase binding	-	ISO	Function
GO:0031647	regulation of protein stability	21900893.	IMP	Process
GO:0031965	nuclear membrane	-	ISO	Component
GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	-	ISO	Process
GO:0034605	cellular response to heat	-	ISO	Process
GO:0035259	glucocorticoid receptor binding	-	ISO	Function
GO:0043392	negative regulation of DNA binding	-	ISO	Process
GO:0043433	negative regulation of DNA-binding transcription factor activity	-	ISO	Process
GO:0044388	small protein activating enzyme binding	-	ISO	Function
GO:0044389	ubiquitin-like protein ligase binding	21873635.	IBA	Function
GO:0045202	synapse	-	ISO	Component
GO:0045759	negative regulation of action potential	-	ISO	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0050821	protein stabilization	-	ISO	Process
GO:0060021	roof of mouth development	16990542.	IMP	Process
GO:0071276	cellular response to cadmium ion	-	ISO	Process
GO:0086004	regulation of cardiac muscle cell contraction	21900893.	IMP	Process
GO:0090204	protein localization to nuclear pore	19033381.	IMP	Process
GO:0097165	nuclear stress granule	-	ISO	Component
GO:1901896	positive regulation of calcium-transporting ATPase activity	21900893.	IMP	Process
GO:1902260	negative regulation of delayed rectifier potassium channel activity	-	ISO	Process
GO:1903169	regulation of calcium ion transmembrane transport	21900893.	IMP	Process