EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000026193 (Gene tree)
Gene ID: 14268
Gene Symbol: Fn1
Alias: Fn|Fn-1
Full Name: fibronectin 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 67681
Position: chr1: 71585520-71653200
Accession: 95566
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000187938	-	7965	-	ENSMUSP00000140975	2361 (aa)	-	Q3UHL6
ENSMUST00000188674	-	7680	-	ENSMUSP00000140907	2266 (aa)	-	A0A087WS56
ENSMUST00000186613	-	426	-	ENSMUSP00000140153	71 (aa)	-	A0A087WQE0
ENSMUST00000188092	-	703	-	-	- (aa)	-	-
ENSMUST00000189160	-	2778	-	-	- (aa)	-	-
ENSMUST00000190780	-	7694	-	ENSMUSP00000140816	2271 (aa)	-	B9EHT6
ENSMUST00000185408	-	4022	-	-	- (aa)	-	-
ENSMUST00000186940	-	1350	-	ENSMUSP00000140315	383 (aa)	-	Q4KL80
ENSMUST00000189821	-	7410	XM_017315837	ENSMUSP00000139702	2176 (aa)	XP_017171326	B7ZNJ1
ENSMUST00000186879	-	2104	-	-	- (aa)	-	-
ENSMUST00000187627	-	1190	-	ENSMUSP00000140955	200 (aa)	-	A0A087WS99
ENSMUST00000055226	-	8315	XM_006495697	ENSMUSP00000054499	2477 (aa)	XP_006495760	P11276
ENSMUST00000186985	-	816	-	ENSMUSP00000141193	67 (aa)	-	A0A087WSU6
ENSMUST00000186575	-	495	-	-	- (aa)	-	-
ENSMUST00000186129	-	7797	XM_017315848	ENSMUSP00000141123	2296 (aa)	XP_017171337	A0A087WSN6
ENSMUST00000186736	-	671	-	ENSMUSP00000140372	160 (aa)	-	A0A087WQW8
ENSMUST00000188894	-	8043	-	ENSMUSP00000140471	2386 (aa)	-	A0A087WR50

Gene Model

Click here to download ENSMUSG00000026193's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04151	PI3K-Akt signaling pathway	KEGG
mmu04510	Focal adhesion	KEGG
mmu04512	ECM-receptor interaction	KEGG
mmu04810	Regulation of actin cytoskeleton	KEGG
mmu04933	AGE-RAGE signaling pathway in diabetic complications	KEGG
mmu05100	Bacterial invasion of epithelial cells	KEGG
mmu05146	Amoebiasis	KEGG
mmu05165	Human papillomavirus infection	KEGG
mmu05200	Pathways in cancer	KEGG
mmu05205	Proteoglycans in cancer	KEGG
mmu05222	Small cell lung cancer	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000026193's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000026193	Fn1	100	96.364	ENSG00000115414	FN1	100	94.690	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001525	angiogenesis	-	IEA	Process
GO:0001775	cell activation	-	ISO	Process
GO:0001932	regulation of protein phosphorylation	-	ISO	Process
GO:0002020	protease binding	-	ISO	Function
GO:0005102	signaling receptor binding	-	ISO	Function
GO:0005178	integrin binding	-	ISO	Function
GO:0005201	extracellular matrix structural constituent	22159717.28071719.	IEA	Function
GO:0005201	extracellular matrix structural constituent	22159717.28071719.	RCA	Function
GO:0005515	protein binding	15102471.18281502.	IPI	Function
GO:0005576	extracellular region	-	IEA	Component
GO:0005577	fibrinogen complex	-	ISO	Component
GO:0005604	basement membrane	8984825.11511678.24191021.	IDA	Component
GO:0005604	basement membrane	-	ISO	Component
GO:0005615	extracellular space	24006456.	HDA	Component
GO:0005615	extracellular space	-	ISO	Component
GO:0005793	endoplasmic reticulum-Golgi intermediate compartment	-	ISO	Component
GO:0006953	acute-phase response	-	IEA	Process
GO:0007044	cell-substrate junction assembly	12867986.	IDA	Process
GO:0007155	cell adhesion	9441684.12021259.	IDA	Process
GO:0007160	cell-matrix adhesion	15728191.	IDA	Process
GO:0007160	cell-matrix adhesion	-	ISO	Process
GO:0007161	calcium-independent cell-matrix adhesion	19651211.	IDA	Process
GO:0008022	protein C-terminus binding	-	ISO	Function
GO:0008201	heparin binding	-	IEA	Function
GO:0008284	positive regulation of cell proliferation	-	ISO	Process
GO:0008347	glial cell migration	-	ISO	Process
GO:0008360	regulation of cell shape	-	IEA	Process
GO:0010628	positive regulation of gene expression	-	ISO	Process
GO:0016324	apical plasma membrane	10742111.	IDA	Component
GO:0016504	peptidase activator activity	16061471.	IDA	Function
GO:0018149	peptide cross-linking	-	ISO	Process
GO:0019899	enzyme binding	-	ISO	Function
GO:0030198	extracellular matrix organization	-	ISO	Process
GO:0030335	positive regulation of cell migration	-	ISO	Process
GO:0031012	extracellular matrix	2209468.9421166.11511678.15065125.15728191.18559979.22821713.22984613.	IDA	Component
GO:0031012	extracellular matrix	26571399.	ISO	Component
GO:0031012	extracellular matrix	12153613.	TAS	Component
GO:0033622	integrin activation	-	ISO	Process
GO:0034446	substrate adhesion-dependent cell spreading	-	ISO	Process
GO:0035987	endodermal cell differentiation	-	ISO	Process
GO:0042060	wound healing	12847088.	IMP	Process
GO:0042802	identical protein binding	-	ISO	Function
GO:0043066	negative regulation of apoptotic process	-	ISO	Process
GO:0043394	proteoglycan binding	29030641.	ISO	Function
GO:0045340	mercury ion binding	-	ISO	Function
GO:0045773	positive regulation of axon extension	12879062.	IDA	Process
GO:0048146	positive regulation of fibroblast proliferation	-	ISO	Process
GO:0050921	positive regulation of chemotaxis	-	ISO	Process
GO:0051087	chaperone binding	-	ISO	Function
GO:0051702	interaction with symbiont	-	ISO	Process
GO:0052047	interaction with other organism via secreted substance involved in symbiotic interaction	-	ISO	Process
GO:0062023	collagen-containing extracellular matrix	22159717.23658023.28071719.	HDA	Component
GO:0062023	collagen-containing extracellular matrix	-	ISO	Component
GO:0070062	extracellular exosome	-	ISO	Component
GO:0070372	regulation of ERK1 and ERK2 cascade	-	ISO	Process
GO:0071288	cellular response to mercury ion	-	ISO	Process
GO:0071347	cellular response to interleukin-1	-	ISO	Process
GO:0097718	disordered domain specific binding	-	ISO	Function
GO:1901166	neural crest cell migration involved in autonomic nervous system development	26571399.	ISO	Process
GO:1904237	positive regulation of substrate-dependent cell migration, cell attachment to substrate	-	ISO	Process
GO:2001202	negative regulation of transforming growth factor-beta secretion	-	ISO	Process