EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000026219 (Gene tree)
Gene ID: 14897
Gene Symbol: Trip12
Alias: 1110036I07Rik|6720416K24Rik|Gtl6
Full Name: thyroid hormone receptor interactor 12
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 119328
Position: chr1: 84721189-84840516
Accession: 1309481
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000191187	-	859	-	-	- (aa)	-	-
ENSMUST00000185672	-	682	-	-	- (aa)	-	-
ENSMUST00000190067	-	521	-	ENSMUSP00000140817	146 (aa)	-	Q3TP48
ENSMUST00000186465	-	9590	XM_011238655	ENSMUSP00000140224	2025 (aa)	XP_011236957	G5E870
ENSMUST00000185720	-	2242	-	-	- (aa)	-	-
ENSMUST00000190125	-	378	-	-	- (aa)	-	-
ENSMUST00000190474	-	1938	-	-	- (aa)	-	-
ENSMUST00000189670	-	2847	-	ENSMUSP00000140789	830 (aa)	-	A0A087WRV6
ENSMUST00000185567	-	2513	-	-	- (aa)	-	-
ENSMUST00000186894	-	3073	-	ENSMUSP00000140267	982 (aa)	-	A0A0B4J1N9
ENSMUST00000027421	-	9632	XM_006496409	ENSMUSP00000027421	2025 (aa)	XP_006496472	G5E870
ENSMUST00000189841	-	524	-	ENSMUSP00000140879	98 (aa)	-	A0A087WS33
ENSMUST00000187818	-	365	-	ENSMUSP00000140917	65 (aa)	-	A0A087WS65
ENSMUST00000187733	-	865	-	ENSMUSP00000140675	33 (aa)	-	A0A087WRK9
ENSMUST00000190464	-	640	-	ENSMUSP00000141035	213 (aa)	-	A0A087WSG4
ENSMUST00000186648	-	6442	XM_006496422	ENSMUSP00000139563	1992 (aa)	XP_006496485	A0A087WNZ7
ENSMUST00000189496	-	1392	-	ENSMUSP00000139682	423 (aa)	-	A0A087WP92
ENSMUST00000185909	-	1641	-	ENSMUSP00000139986	346 (aa)	-	A0A087WQ02

Gene Model

Click here to download ENSMUSG00000026219's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04120	Ubiquitin mediated proteolysis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000026219's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000026219	Trip12	100	100.000	ENSG00000153827	TRIP12	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004842	ubiquitin-protein transferase activity	-	ISO	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006511	ubiquitin-dependent protein catabolic process	21873635.	IBA	Process
GO:0006511	ubiquitin-dependent protein catabolic process	-	ISO	Process
GO:0006974	cellular response to DNA damage stimulus	21873635.	IBA	Process
GO:0006974	cellular response to DNA damage stimulus	-	ISO	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0016740	transferase activity	-	IEA	Function
GO:0045995	regulation of embryonic development	22028794.	IMP	Process
GO:0046966	thyroid hormone receptor binding	-	ISO	Function
GO:1901315	negative regulation of histone H2A K63-linked ubiquitination	21873635.	IBA	Process
GO:1901315	negative regulation of histone H2A K63-linked ubiquitination	-	ISO	Process
GO:2000780	negative regulation of double-strand break repair	-	ISO	Process