EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000026234 (Gene tree)
Gene ID: 17975
Gene Symbol: Ncl
Alias: B530004O11Rik|C23
Full Name: nucleolin
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 14682 bases
Position: chr1:86344719-86359400
Accession: 97286
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000027438	RRM_1	PF00076.22	7.2e-59	1	4
ENSMUSP00000027438	RRM_1	PF00076.22	7.2e-59	2	4
ENSMUSP00000027438	RRM_1	PF00076.22	7.2e-59	3	4
ENSMUSP00000027438	RRM_1	PF00076.22	7.2e-59	4	4

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000185676	-	3072	-	-	- (aa)	-	-
ENSMUST00000188682	-	601	-	-	- (aa)	-	-
ENSMUST00000186050	-	1054	-	-	- (aa)	-	-
ENSMUST00000185785	-	661	-	ENSMUSP00000140696	76 (aa)	-	A0A087WRM5
ENSMUST00000027438	-	8202	XM_006529238	ENSMUSP00000027438	707 (aa)	XP_006529301	P09405
ENSMUST00000189504	-	502	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000026234's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000026234's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000026234	Ncl	61	83.220	ENSG00000115053	NCL	97	80.137	Homo_sapiens
ENSMUSG00000026234	Ncl	53	86.280	ENSAMEG00000016289	NCL	92	77.812	Ailuropoda_melanoleuca
ENSMUSG00000026234	Ncl	53	86.807	ENSANAG00000035814	-	92	77.626	Aotus_nancymaae
ENSMUSG00000026234	Ncl	99	64.580	ENSANAG00000024378	-	94	74.242	Aotus_nancymaae
ENSMUSG00000026234	Ncl	64	39.394	ENSBTAG00000051320	-	87	40.000	Bos_taurus
ENSMUSG00000026234	Ncl	69	81.213	ENSBTAG00000016174	NCL	92	76.541	Bos_taurus
ENSMUSG00000026234	Ncl	54	82.716	ENSBTAG00000050728	-	81	82.716	Bos_taurus
ENSMUSG00000026234	Ncl	68	82.845	ENSBTAG00000026909	-	82	83.193	Bos_taurus
ENSMUSG00000026234	Ncl	53	86.807	ENSCJAG00000013538	NCL	92	77.190	Callithrix_jacchus
ENSMUSG00000026234	Ncl	92	79.666	ENSCAFG00000011037	NCL	92	77.390	Canis_familiaris
ENSMUSG00000026234	Ncl	84	79.208	ENSCAFG00020023145	NCL	89	76.733	Canis_lupus_dingo
ENSMUSG00000026234	Ncl	92	70.588	ENSCHIG00000026149	-	93	70.437	Capra_hircus
ENSMUSG00000026234	Ncl	85	73.984	ENSCHIG00000010894	-	91	76.634	Capra_hircus
ENSMUSG00000026234	Ncl	92	58.742	ENSCHIG00000012143	-	92	67.328	Capra_hircus
ENSMUSG00000026234	Ncl	92	87.225	ENSCHIG00000021052	-	81	87.225	Capra_hircus
ENSMUSG00000026234	Ncl	59	74.883	ENSTSYG00000036886	-	91	66.972	Carlito_syrichta
ENSMUSG00000026234	Ncl	92	77.005	ENSTSYG00000004355	-	92	76.061	Carlito_syrichta
ENSMUSG00000026234	Ncl	95	73.196	ENSTSYG00000029779	-	98	71.672	Carlito_syrichta
ENSMUSG00000026234	Ncl	53	80.475	ENSCAPG00000009405	NCL	91	71.736	Cavia_aperea
ENSMUSG00000026234	Ncl	53	85.488	ENSCPOG00000001034	NCL	92	75.190	Cavia_porcellus
ENSMUSG00000026234	Ncl	53	86.807	ENSCCAG00000021040	-	92	77.896	Cebus_capucinus
ENSMUSG00000026234	Ncl	72	82.927	ENSCCAG00000000551	-	84	82.927	Cebus_capucinus
ENSMUSG00000026234	Ncl	92	80.061	ENSCATG00000037033	NCL	92	78.082	Cercocebus_atys
ENSMUSG00000026234	Ncl	92	75.152	ENSCLAG00000013080	NCL	92	74.962	Chinchilla_lanigera
ENSMUSG00000026234	Ncl	53	86.579	ENSCSAG00000006660	NCL	95	88.155	Chlorocebus_sabaeus
ENSMUSG00000026234	Ncl	61	69.977	ENSCHOG00000012860	NCL	89	69.037	Choloepus_hoffmanni
ENSMUSG00000026234	Ncl	63	83.077	ENSCANG00000036756	NCL	88	85.455	Colobus_angolensis_palliatus
ENSMUSG00000026234	Ncl	92	73.853	ENSCGRG00001022350	-	95	75.077	Cricetulus_griseus_chok1gshd
ENSMUSG00000026234	Ncl	92	87.423	ENSCGRG00001024315	-	91	87.423	Cricetulus_griseus_chok1gshd
ENSMUSG00000026234	Ncl	85	86.623	ENSCGRG00000017894	-	88	86.667	Cricetulus_griseus_crigri
ENSMUSG00000026234	Ncl	92	73.813	ENSCGRG00000000507	-	93	73.344	Cricetulus_griseus_crigri
ENSMUSG00000026234	Ncl	100	69.608	ENSDNOG00000046347	-	99	67.647	Dasypus_novemcinctus
ENSMUSG00000026234	Ncl	92	77.156	ENSDNOG00000010783	-	92	75.794	Dasypus_novemcinctus
ENSMUSG00000026234	Ncl	51	75.890	ENSDORG00000023596	-	92	68.056	Dipodomys_ordii
ENSMUSG00000026234	Ncl	53	86.243	ENSDORG00000012513	-	91	77.710	Dipodomys_ordii
ENSMUSG00000026234	Ncl	71	59.563	ENSETEG00000008139	-	89	59.401	Echinops_telfairi
ENSMUSG00000026234	Ncl	53	83.155	ENSETEG00000014756	-	86	83.245	Echinops_telfairi
ENSMUSG00000026234	Ncl	53	83.113	ENSETEG00000018937	-	85	72.920	Echinops_telfairi
ENSMUSG00000026234	Ncl	70	55.090	ENSETEG00000008553	-	88	57.011	Echinops_telfairi
ENSMUSG00000026234	Ncl	89	77.795	ENSEASG00005008488	NCL	91	77.950	Equus_asinus_asinus
ENSMUSG00000026234	Ncl	92	78.182	ENSECAG00000021868	NCL	92	78.030	Equus_caballus
ENSMUSG00000026234	Ncl	53	81.217	ENSEEUG00000005913	NCL	85	73.102	Erinaceus_europaeus
ENSMUSG00000026234	Ncl	92	78.788	ENSFCAG00000027622	NCL	92	77.576	Felis_catus
ENSMUSG00000026234	Ncl	91	77.982	ENSFDAG00000014291	NCL	92	75.841	Fukomys_damarensis
ENSMUSG00000026234	Ncl	75	89.091	ENSGGOG00000004300	NCL	96	86.275	Gorilla_gorilla
ENSMUSG00000026234	Ncl	92	77.086	ENSHGLG00000002031	-	92	74.962	Heterocephalus_glaber_female
ENSMUSG00000026234	Ncl	91	69.124	ENSHGLG00000011069	-	62	74.600	Heterocephalus_glaber_female
ENSMUSG00000026234	Ncl	92	77.134	ENSHGLG00100014537	-	92	75.152	Heterocephalus_glaber_male
ENSMUSG00000026234	Ncl	72	78.133	ENSHGLG00100000745	-	82	78.249	Heterocephalus_glaber_male
ENSMUSG00000026234	Ncl	53	84.800	ENSJJAG00000016165	Ncl	91	78.154	Jaculus_jaculus
ENSMUSG00000026234	Ncl	91	66.361	ENSLAFG00000013061	NCL	91	65.138	Loxodonta_africana
ENSMUSG00000026234	Ncl	92	80.091	ENSMFAG00000040385	NCL	92	78.116	Macaca_fascicularis
ENSMUSG00000026234	Ncl	92	80.091	ENSMMUG00000018094	NCL	93	86.319	Macaca_mulatta
ENSMUSG00000026234	Ncl	74	89.091	ENSMNEG00000023839	NCL	97	86.319	Macaca_nemestrina
ENSMUSG00000026234	Ncl	92	80.213	ENSMLEG00000028935	NCL	92	78.234	Mandrillus_leucophaeus
ENSMUSG00000026234	Ncl	92	63.594	ENSMICG00000029975	-	87	75.177	Microcebus_murinus
ENSMUSG00000026234	Ncl	92	78.995	ENSMICG00000002538	-	92	78.234	Microcebus_murinus
ENSMUSG00000026234	Ncl	100	97.737	MGP_CAROLIEiJ_G0014362	Ncl	100	97.737	Mus_caroli
ENSMUSG00000026234	Ncl	92	91.680	MGP_PahariEiJ_G0027599	Ncl	92	92.604	Mus_pahari
ENSMUSG00000026234	Ncl	100	99.011	MGP_SPRETEiJ_G0015164	Ncl	100	99.011	Mus_spretus
ENSMUSG00000026234	Ncl	92	75.831	ENSMLUG00000014547	NCL	92	77.879	Myotis_lucifugus
ENSMUSG00000026234	Ncl	52	78.342	ENSNGAG00000006188	-	54	78.610	Nannospalax_galili
ENSMUSG00000026234	Ncl	92	85.281	ENSNGAG00000002454	-	91	85.106	Nannospalax_galili
ENSMUSG00000026234	Ncl	61	72.654	ENSNLEG00000014107	-	85	65.074	Nomascus_leucogenys
ENSMUSG00000026234	Ncl	81	72.706	ENSODEG00000002441	-	87	77.119	Octodon_degus
ENSMUSG00000026234	Ncl	53	81.963	ENSODEG00000003281	-	91	72.936	Octodon_degus
ENSMUSG00000026234	Ncl	91	59.855	ENSODEG00000007803	-	90	58.664	Octodon_degus
ENSMUSG00000026234	Ncl	92	71.319	ENSOCUG00000004312	NCL	100	73.174	Oryctolagus_cuniculus
ENSMUSG00000026234	Ncl	62	70.295	ENSOARG00000004072	-	71	70.507	Ovis_aries
ENSMUSG00000026234	Ncl	61	82.028	ENSOARG00000013710	-	95	70.066	Ovis_aries
ENSMUSG00000026234	Ncl	88	59.859	ENSOARG00000013270	-	100	58.904	Ovis_aries
ENSMUSG00000026234	Ncl	61	82.232	ENSOARG00000020709	-	92	73.652	Ovis_aries
ENSMUSG00000026234	Ncl	75	89.091	ENSPPAG00000011619	NCL	91	86.275	Pan_paniscus
ENSMUSG00000026234	Ncl	92	78.452	ENSPPRG00000012603	NCL	92	77.238	Panthera_pardus
ENSMUSG00000026234	Ncl	91	78.254	ENSPTIG00000010393	NCL	91	77.029	Panthera_tigris_altaica
ENSMUSG00000026234	Ncl	75	89.091	ENSPTRG00000013025	NCL	92	85.993	Pan_troglodytes
ENSMUSG00000026234	Ncl	92	80.091	ENSPANG00000010292	NCL	92	78.116	Papio_anubis
ENSMUSG00000026234	Ncl	92	80.880	ENSPCOG00000003051	-	91	79.363	Propithecus_coquereli
ENSMUSG00000026234	Ncl	91	75.697	ENSPCOG00000004160	-	94	74.000	Propithecus_coquereli
ENSMUSG00000026234	Ncl	92	80.000	ENSPVAG00000000297	NCL	92	78.626	Pteropus_vampyrus
ENSMUSG00000026234	Ncl	92	90.854	ENSRNOG00000018273	Ncl	92	90.549	Rattus_norvegicus
ENSMUSG00000026234	Ncl	69	87.197	ENSRBIG00000035396	-	80	85.570	Rhinopithecus_bieti
ENSMUSG00000026234	Ncl	92	76.560	ENSRBIG00000037525	-	91	74.581	Rhinopithecus_bieti
ENSMUSG00000026234	Ncl	92	78.539	ENSRROG00000028756	-	91	77.508	Rhinopithecus_roxellana
ENSMUSG00000026234	Ncl	95	75.085	ENSRROG00000036103	-	99	74.074	Rhinopithecus_roxellana
ENSMUSG00000026234	Ncl	53	86.544	ENSSBOG00000029193	-	92	76.818	Saimiri_boliviensis_boliviensis
ENSMUSG00000026234	Ncl	61	76.310	ENSSBOG00000027549	-	91	70.884	Saimiri_boliviensis_boliviensis
ENSMUSG00000026234	Ncl	92	76.727	ENSSSCG00000016275	NCL	92	76.276	Sus_scrofa
ENSMUSG00000026234	Ncl	65	71.955	ENSTBEG00000002469	-	66	71.714	Tupaia_belangeri
ENSMUSG00000026234	Ncl	55	74.406	ENSTBEG00000001546	-	85	69.508	Tupaia_belangeri
ENSMUSG00000026234	Ncl	92	76.596	ENSTTRG00000009094	NCL	91	76.220	Tursiops_truncatus
ENSMUSG00000026234	Ncl	67	86.316	ENSUAMG00000005639	NCL	88	82.393	Ursus_americanus
ENSMUSG00000026234	Ncl	53	86.544	ENSUMAG00000015789	NCL	92	77.287	Ursus_maritimus
ENSMUSG00000026234	Ncl	69	78.873	ENSVPAG00000001796	NCL	69	78.873	Vicugna_pacos
ENSMUSG00000026234	Ncl	92	77.301	ENSVVUG00000025564	NCL	91	75.000	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001525	angiogenesis	-	ISO	Process
GO:0001650	fibrillar center	-	ISO	Component
GO:0001651	dense fibrillar component	-	ISO	Component
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003697	single-stranded DNA binding	-	ISO	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	17971306.	IDA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0005102	signaling receptor binding	-	ISO	Function
GO:0005509	calcium ion binding	-	ISO	Function
GO:0005515	protein binding	10567518.12176995.15102471.19710015.20415667.21048921.21518874.24515436.28784777.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	9102301.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	17971306.	IDA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	2100262.14729462.15364958.17971306.23712942.	IDA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005938	cell cortex	-	ISO	Component
GO:0006897	endocytosis	-	ISO	Process
GO:0008022	protein C-terminus binding	-	ISO	Function
GO:0009986	cell surface	-	ISO	Component
GO:0017148	negative regulation of translation	-	ISO	Process
GO:0032760	positive regulation of tumor necrosis factor production	-	ISO	Process
GO:0035368	selenocysteine insertion sequence binding	-	ISO	Function
GO:0036464	cytoplasmic ribonucleoprotein granule	-	ISO	Component
GO:0042134	rRNA primary transcript binding	-	ISO	Function
GO:0042162	telomeric DNA binding	-	ISO	Function
GO:0042393	histone binding	-	ISO	Function
GO:0042802	identical protein binding	-	ISO	Function
GO:0043066	negative regulation of apoptotic process	-	ISO	Process
GO:0043236	laminin binding	-	ISO	Function
GO:0043565	sequence-specific DNA binding	-	ISO	Function
GO:0044547	DNA topoisomerase binding	-	ISO	Function
GO:0045944	positive regulation of transcription by RNA polymerase II	24530304.	IGI	Process
GO:0048027	mRNA 5'-UTR binding	-	ISO	Function
GO:0071222	cellular response to lipopolysaccharide	-	ISO	Process
GO:0071364	cellular response to epidermal growth factor stimulus	8702723.	IDA	Process
GO:1901838	positive regulation of transcription of nucleolar large rRNA by RNA polymerase I	-	ISO	Process
GO:1990631	ErbB-4 class receptor binding	-	ISO	Function
GO:1990830	cellular response to leukemia inhibitory factor	20439489.	IEP	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component
GO:1990904	ribonucleoprotein complex	18809582.	ISO	Component
GO:2000232	regulation of rRNA processing	-	ISO	Process
GO:2000778	positive regulation of interleukin-6 secretion	-	ISO	Process