EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000026245 (Gene tree)
Gene ID: 23874
Gene Symbol: Farsb
Alias: Farsl|Farslb|Frsb|PheRS alpha
Full Name: phenylalanyl-tRNA synthetase%2C beta subunit
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 70923 bases
Position: chr1:78417975-78488897
Accession: 1346035
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000139933	B3_4	PF03483.17	1.8e-26	1	1
ENSMUSP00000069508	B3_4	PF03483.17	1.6e-25	1	1
ENSMUSP00000129828	B3_4	PF03483.17	1.6e-25	1	1
ENSMUSP00000069508	B5	PF03484.15	3.1e-15	1	1
ENSMUSP00000129828	B5	PF03484.15	3.1e-15	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000068333	-	1951	-	ENSMUSP00000069508	589 (aa)	-	Q9WUA2
ENSMUST00000189529	-	1801	-	ENSMUSP00000140001	63 (aa)	-	A0A087WQ15
ENSMUST00000188247	-	970	-	ENSMUSP00000139933	237 (aa)	-	A0A087WPV4
ENSMUST00000190441	-	619	-	ENSMUSP00000140934	206 (aa)	-	A0A087WS80
ENSMUST00000170217	-	2036	-	ENSMUSP00000129828	589 (aa)	-	Q9WUA2
ENSMUST00000191021	-	656	-	-	- (aa)	-	-
ENSMUST00000189931	-	449	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000026245's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000026245's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000026245	Farsb	100	94.093	ENSG00000116120	FARSB	100	93.548	Homo_sapiens
ENSMUSG00000026245	Farsb	100	76.780	ENSAPOG00000013072	farsb	100	73.220	Acanthochromis_polyacanthus
ENSMUSG00000026245	Farsb	100	91.681	ENSAMEG00000005984	FARSB	100	91.681	Ailuropoda_melanoleuca
ENSMUSG00000026245	Farsb	100	74.576	ENSACIG00000021623	farsb	100	74.576	Amphilophus_citrinellus
ENSMUSG00000026245	Farsb	100	75.932	ENSAOCG00000004912	farsb	100	73.729	Amphiprion_ocellaris
ENSMUSG00000026245	Farsb	100	76.271	ENSAPEG00000001153	farsb	100	72.712	Amphiprion_percula
ENSMUSG00000026245	Farsb	100	77.458	ENSATEG00000021441	farsb	70	77.458	Anabas_testudineus
ENSMUSG00000026245	Farsb	73	34.759	ENSAPLG00000003167	LRRC47	52	34.759	Anas_platyrhynchos
ENSMUSG00000026245	Farsb	99	81.849	ENSAPLG00000010292	FARSB	99	81.849	Anas_platyrhynchos
ENSMUSG00000026245	Farsb	100	81.864	ENSACAG00000004769	FARSB	98	81.864	Anolis_carolinensis
ENSMUSG00000026245	Farsb	100	92.020	ENSANAG00000024637	FARSB	100	92.020	Aotus_nancymaae
ENSMUSG00000026245	Farsb	100	76.441	ENSACLG00000013951	farsb	100	74.336	Astatotilapia_calliptera
ENSMUSG00000026245	Farsb	99	71.915	ENSAMXG00000033881	farsb	100	73.800	Astyanax_mexicanus
ENSMUSG00000026245	Farsb	100	91.139	ENSBTAG00000045523	-	100	90.957	Bos_taurus
ENSMUSG00000026245	Farsb	100	91.681	ENSBTAG00000011649	FARSB	100	91.681	Bos_taurus
ENSMUSG00000026245	Farsb	100	61.345	WBGene00001498	fars-3	100	59.022	Caenorhabditis_elegans
ENSMUSG00000026245	Farsb	100	92.699	ENSCJAG00000012181	FARSB	100	92.699	Callithrix_jacchus
ENSMUSG00000026245	Farsb	53	89.600	ENSCAFG00000029926	-	80	88.235	Canis_familiaris
ENSMUSG00000026245	Farsb	100	92.869	ENSCAFG00000016094	-	100	92.869	Canis_familiaris
ENSMUSG00000026245	Farsb	99	91.949	ENSCAFG00020026684	FARSB	100	92.718	Canis_lupus_dingo
ENSMUSG00000026245	Farsb	100	91.681	ENSCHIG00000014275	FARSB	100	91.681	Capra_hircus
ENSMUSG00000026245	Farsb	100	92.360	ENSTSYG00000008461	FARSB	100	92.360	Carlito_syrichta
ENSMUSG00000026245	Farsb	100	82.258	ENSCAPG00000016436	FARSB	99	85.192	Cavia_aperea
ENSMUSG00000026245	Farsb	83	32.710	ENSCAPG00000016517	LRRC47	56	33.796	Cavia_aperea
ENSMUSG00000026245	Farsb	100	93.249	ENSCPOG00000013109	FARSB	100	92.190	Cavia_porcellus
ENSMUSG00000026245	Farsb	100	91.983	ENSCCAG00000025840	FARSB	100	88.285	Cebus_capucinus
ENSMUSG00000026245	Farsb	100	94.093	ENSCATG00000036168	FARSB	100	93.718	Cercocebus_atys
ENSMUSG00000026245	Farsb	100	91.561	ENSCLAG00000011954	FARSB	100	91.002	Chinchilla_lanigera
ENSMUSG00000026245	Farsb	100	94.093	ENSCSAG00000007806	FARSB	100	93.718	Chlorocebus_sabaeus
ENSMUSG00000026245	Farsb	81	91.011	ENSCHOG00000011785	FARSB	81	91.011	Choloepus_hoffmanni
ENSMUSG00000026245	Farsb	100	82.712	ENSCPBG00000019346	FARSB	98	82.712	Chrysemys_picta_bellii
ENSMUSG00000026245	Farsb	99	57.692	ENSCING00000004180	-	99	57.692	Ciona_intestinalis
ENSMUSG00000026245	Farsb	99	60.368	ENSCSAVG00000005346	-	99	60.368	Ciona_savignyi
ENSMUSG00000026245	Farsb	100	94.937	ENSCANG00000036239	FARSB	100	93.673	Colobus_angolensis_palliatus
ENSMUSG00000026245	Farsb	100	96.624	ENSCGRG00001022928	Farsb	100	96.265	Cricetulus_griseus_chok1gshd
ENSMUSG00000026245	Farsb	100	96.624	ENSCGRG00000001513	Farsb	100	96.265	Cricetulus_griseus_crigri
ENSMUSG00000026245	Farsb	100	76.102	ENSCSEG00000005415	farsb	95	76.102	Cynoglossus_semilaevis
ENSMUSG00000026245	Farsb	99	72.650	ENSCVAG00000018815	farsb	98	74.444	Cyprinodon_variegatus
ENSMUSG00000026245	Farsb	100	76.481	ENSDARG00000016864	farsb	100	76.481	Danio_rerio
ENSMUSG00000026245	Farsb	100	90.492	ENSDNOG00000002511	FARSB	100	90.492	Dasypus_novemcinctus
ENSMUSG00000026245	Farsb	100	92.530	ENSDORG00000011102	Farsb	100	92.530	Dipodomys_ordii
ENSMUSG00000026245	Farsb	82	32.857	ENSDORG00000016594	Lrrc47	55	32.857	Dipodomys_ordii
ENSMUSG00000026245	Farsb	100	62.500	FBgn0039175	beta-PheRS	100	62.500	Drosophila_melanogaster
ENSMUSG00000026245	Farsb	100	86.498	ENSETEG00000015080	FARSB	100	86.467	Echinops_telfairi
ENSMUSG00000026245	Farsb	99	69.492	ENSEBUG00000006846	farsb	100	65.424	Eptatretus_burgeri
ENSMUSG00000026245	Farsb	100	92.699	ENSEASG00005011297	FARSB	100	92.699	Equus_asinus_asinus
ENSMUSG00000026245	Farsb	100	92.405	ENSECAG00000023086	FARSB	99	92.463	Equus_caballus
ENSMUSG00000026245	Farsb	100	71.307	ENSEEUG00000007441	FARSB	100	71.307	Erinaceus_europaeus
ENSMUSG00000026245	Farsb	97	76.573	ENSELUG00000014767	farsb	99	76.573	Esox_lucius
ENSMUSG00000026245	Farsb	100	92.190	ENSFCAG00000026772	FARSB	100	92.190	Felis_catus
ENSMUSG00000026245	Farsb	97	81.404	ENSFALG00000006739	FARSB	96	81.404	Ficedula_albicollis
ENSMUSG00000026245	Farsb	100	93.671	ENSFDAG00000008871	FARSB	100	92.190	Fukomys_damarensis
ENSMUSG00000026245	Farsb	100	76.102	ENSFHEG00000020939	farsb	97	76.252	Fundulus_heteroclitus
ENSMUSG00000026245	Farsb	99	70.085	ENSGMOG00000013047	farsb	100	73.567	Gadus_morhua
ENSMUSG00000026245	Farsb	100	82.203	ENSGALG00000005236	FARSB	100	82.203	Gallus_gallus
ENSMUSG00000026245	Farsb	100	74.576	ENSGAFG00000020900	farsb	100	65.709	Gambusia_affinis
ENSMUSG00000026245	Farsb	99	73.077	ENSGACG00000000261	farsb	100	75.231	Gasterosteus_aculeatus
ENSMUSG00000026245	Farsb	100	83.220	ENSGAGG00000016575	FARSB	98	83.220	Gopherus_agassizii
ENSMUSG00000026245	Farsb	100	76.271	ENSHBUG00000022379	farsb	100	74.746	Haplochromis_burtoni
ENSMUSG00000026245	Farsb	100	94.093	ENSHGLG00000015965	FARSB	100	92.699	Heterocephalus_glaber_female
ENSMUSG00000026245	Farsb	100	94.093	ENSHGLG00100001035	FARSB	100	92.699	Heterocephalus_glaber_male
ENSMUSG00000026245	Farsb	98	67.241	ENSHCOG00000016462	farsb	100	70.709	Hippocampus_comes
ENSMUSG00000026245	Farsb	100	78.136	ENSIPUG00000002754	farsb	100	78.136	Ictalurus_punctatus
ENSMUSG00000026245	Farsb	100	93.888	ENSSTOG00000016169	FARSB	100	93.888	Ictidomys_tridecemlineatus
ENSMUSG00000026245	Farsb	100	93.209	ENSJJAG00000003267	Farsb	100	93.209	Jaculus_jaculus
ENSMUSG00000026245	Farsb	100	68.519	ENSKMAG00000005363	farsb	100	68.519	Kryptolebias_marmoratus
ENSMUSG00000026245	Farsb	100	76.102	ENSLBEG00000018127	farsb	70	76.102	Labrus_bergylta
ENSMUSG00000026245	Farsb	100	79.831	ENSLACG00000002551	FARSB	100	79.831	Latimeria_chalumnae
ENSMUSG00000026245	Farsb	100	77.929	ENSLOCG00000004136	farsb	100	77.929	Lepisosteus_oculatus
ENSMUSG00000026245	Farsb	100	92.020	ENSLAFG00000015659	FARSB	100	92.020	Loxodonta_africana
ENSMUSG00000026245	Farsb	100	94.093	ENSMFAG00000036645	FARSB	100	93.548	Macaca_fascicularis
ENSMUSG00000026245	Farsb	100	90.492	ENSMMUG00000007685	FARSB	100	90.492	Macaca_mulatta
ENSMUSG00000026245	Farsb	100	94.093	ENSMNEG00000030672	FARSB	100	93.548	Macaca_nemestrina
ENSMUSG00000026245	Farsb	100	94.093	ENSMLEG00000042060	FARSB	100	93.718	Mandrillus_leucophaeus
ENSMUSG00000026245	Farsb	100	77.119	ENSMAMG00000011835	farsb	100	71.356	Mastacembelus_armatus
ENSMUSG00000026245	Farsb	96	74.291	ENSMZEG00005004544	farsb	100	74.291	Maylandia_zebra
ENSMUSG00000026245	Farsb	95	81.607	ENSMGAG00000004670	FARSB	100	81.607	Meleagris_gallopavo
ENSMUSG00000026245	Farsb	65	34.731	ENSMGAG00000001670	LRRC47	75	34.731	Meleagris_gallopavo
ENSMUSG00000026245	Farsb	72	87.500	ENSMAUG00000017805	Farsb	100	87.500	Mesocricetus_auratus
ENSMUSG00000026245	Farsb	100	93.548	ENSMICG00000002495	FARSB	100	93.548	Microcebus_murinus
ENSMUSG00000026245	Farsb	100	94.228	ENSMOCG00000003181	Farsb	100	94.228	Microtus_ochrogaster
ENSMUSG00000026245	Farsb	100	71.115	ENSMMOG00000006265	farsb	100	71.115	Mola_mola
ENSMUSG00000026245	Farsb	100	86.441	ENSMODG00000021192	FARSB	100	86.441	Monodelphis_domestica
ENSMUSG00000026245	Farsb	99	71.795	ENSMALG00000021188	farsb	100	68.235	Monopterus_albus
ENSMUSG00000026245	Farsb	100	98.472	MGP_CAROLIEiJ_G0014310	Farsb	100	98.472	Mus_caroli
ENSMUSG00000026245	Farsb	100	99.156	MGP_PahariEiJ_G0027548	Farsb	100	99.156	Mus_pahari
ENSMUSG00000026245	Farsb	100	99.578	MGP_SPRETEiJ_G0015116	Farsb	100	99.578	Mus_spretus
ENSMUSG00000026245	Farsb	100	92.190	ENSMPUG00000016677	FARSB	100	92.190	Mustela_putorius_furo
ENSMUSG00000026245	Farsb	100	94.093	ENSMLUG00000010904	FARSB	100	92.869	Myotis_lucifugus
ENSMUSG00000026245	Farsb	100	93.209	ENSNGAG00000014602	Farsb	100	93.209	Nannospalax_galili
ENSMUSG00000026245	Farsb	100	76.441	ENSNBRG00000003198	farsb	100	72.666	Neolamprologus_brichardi
ENSMUSG00000026245	Farsb	100	93.671	ENSNLEG00000009638	FARSB	100	93.548	Nomascus_leucogenys
ENSMUSG00000026245	Farsb	100	75.424	ENSMEUG00000010798	FARSB	100	75.424	Notamacropus_eugenii
ENSMUSG00000026245	Farsb	89	76.978	ENSOPRG00000003292	FARSB	89	76.978	Ochotona_princeps
ENSMUSG00000026245	Farsb	100	90.323	ENSODEG00000005451	FARSB	100	90.323	Octodon_degus
ENSMUSG00000026245	Farsb	100	76.441	ENSONIG00000014639	farsb	100	76.441	Oreochromis_niloticus
ENSMUSG00000026245	Farsb	99	81.197	ENSOANG00000015387	FARSB	99	82.991	Ornithorhynchus_anatinus
ENSMUSG00000026245	Farsb	100	92.405	ENSOCUG00000007828	FARSB	95	93.346	Oryctolagus_cuniculus
ENSMUSG00000026245	Farsb	100	75.932	ENSORLG00000009135	farsb	100	73.729	Oryzias_latipes
ENSMUSG00000026245	Farsb	100	75.763	ENSORLG00015001072	farsb	100	68.136	Oryzias_latipes_hsok
ENSMUSG00000026245	Farsb	100	76.271	ENSOMEG00000019009	farsb	100	72.391	Oryzias_melastigma
ENSMUSG00000026245	Farsb	100	85.762	ENSOGAG00000010125	FARSB	100	85.762	Otolemur_garnettii
ENSMUSG00000026245	Farsb	100	91.983	ENSOARG00000020329	FARSB	100	91.851	Ovis_aries
ENSMUSG00000026245	Farsb	100	94.093	ENSPPAG00000039268	FARSB	100	93.718	Pan_paniscus
ENSMUSG00000026245	Farsb	100	91.851	ENSPPRG00000010687	FARSB	100	91.851	Panthera_pardus
ENSMUSG00000026245	Farsb	100	91.681	ENSPTIG00000004299	FARSB	100	91.681	Panthera_tigris_altaica
ENSMUSG00000026245	Farsb	100	94.093	ENSPTRG00000012974	FARSB	100	93.718	Pan_troglodytes
ENSMUSG00000026245	Farsb	100	94.093	ENSPANG00000016304	FARSB	100	93.718	Papio_anubis
ENSMUSG00000026245	Farsb	100	75.254	ENSPKIG00000006661	farsb	100	75.254	Paramormyrops_kingsleyae
ENSMUSG00000026245	Farsb	99	80.782	ENSPSIG00000006248	FARSB	99	80.782	Pelodiscus_sinensis
ENSMUSG00000026245	Farsb	78	32.673	ENSPSIG00000004196	LRRC47	53	32.673	Pelodiscus_sinensis
ENSMUSG00000026245	Farsb	99	71.795	ENSPMGG00000002815	farsb	99	74.333	Periophthalmus_magnuspinnatus
ENSMUSG00000026245	Farsb	100	94.737	ENSPEMG00000003131	Farsb	100	94.737	Peromyscus_maniculatus_bairdii
ENSMUSG00000026245	Farsb	100	85.932	ENSPCIG00000019458	FARSB	100	85.932	Phascolarctos_cinereus
ENSMUSG00000026245	Farsb	100	76.271	ENSPLAG00000001104	farsb	100	69.965	Poecilia_latipinna
ENSMUSG00000026245	Farsb	100	76.441	ENSPMEG00000017658	farsb	100	70.141	Poecilia_mexicana
ENSMUSG00000026245	Farsb	100	75.932	ENSPREG00000010583	farsb	100	70.339	Poecilia_reticulata
ENSMUSG00000026245	Farsb	100	94.093	ENSPPYG00000013221	FARSB	100	93.548	Pongo_abelii
ENSMUSG00000026245	Farsb	100	77.637	ENSPCAG00000002757	FARSB	85	84.970	Procavia_capensis
ENSMUSG00000026245	Farsb	67	92.857	ENSPCOG00000028852	FARSB	100	92.857	Propithecus_coquereli
ENSMUSG00000026245	Farsb	100	92.869	ENSPVAG00000006985	FARSB	100	92.869	Pteropus_vampyrus
ENSMUSG00000026245	Farsb	100	64.746	ENSPNYG00000011433	farsb	100	64.746	Pundamilia_nyererei
ENSMUSG00000026245	Farsb	100	77.119	ENSPNAG00000021802	farsb	100	77.119	Pygocentrus_nattereri
ENSMUSG00000026245	Farsb	100	96.774	ENSRNOG00000014119	Farsb	100	96.774	Rattus_norvegicus
ENSMUSG00000026245	Farsb	100	94.515	ENSRBIG00000033191	FARSB	98	93.566	Rhinopithecus_bieti
ENSMUSG00000026245	Farsb	100	94.515	ENSRROG00000029388	FARSB	100	93.888	Rhinopithecus_roxellana
ENSMUSG00000026245	Farsb	97	52.137	YLR060W	FRS1	100	45.649	Saccharomyces_cerevisiae
ENSMUSG00000026245	Farsb	100	83.531	ENSSBOG00000019084	FARSB	100	83.531	Saimiri_boliviensis_boliviensis
ENSMUSG00000026245	Farsb	99	82.906	ENSSHAG00000015752	FARSB	100	79.455	Sarcophilus_harrisii
ENSMUSG00000026245	Farsb	100	75.552	ENSSFOG00015007850	farsb	100	75.552	Scleropages_formosus
ENSMUSG00000026245	Farsb	100	76.780	ENSSMAG00000020668	farsb	100	75.763	Scophthalmus_maximus
ENSMUSG00000026245	Farsb	100	77.872	ENSSDUG00000009685	farsb	100	74.497	Seriola_dumerili
ENSMUSG00000026245	Farsb	100	77.534	ENSSLDG00000025206	farsb	100	74.831	Seriola_lalandi_dorsalis
ENSMUSG00000026245	Farsb	84	78.000	ENSSARG00000005655	-	66	91.096	Sorex_araneus
ENSMUSG00000026245	Farsb	100	76.471	ENSSPUG00000002245	FARSB	100	76.690	Sphenodon_punctatus
ENSMUSG00000026245	Farsb	100	76.780	ENSSPAG00000007367	farsb	69	76.780	Stegastes_partitus
ENSMUSG00000026245	Farsb	100	90.832	ENSSSCG00000016226	-	100	90.832	Sus_scrofa
ENSMUSG00000026245	Farsb	100	83.390	ENSSSCG00000032016	-	100	83.390	Sus_scrofa
ENSMUSG00000026245	Farsb	97	80.877	ENSTGUG00000007788	FARSB	99	80.877	Taeniopygia_guttata
ENSMUSG00000026245	Farsb	100	76.102	ENSTRUG00000009483	farsb	70	76.102	Takifugu_rubripes
ENSMUSG00000026245	Farsb	100	75.763	ENSTNIG00000014310	farsb	100	75.763	Tetraodon_nigroviridis
ENSMUSG00000026245	Farsb	100	64.856	ENSTBEG00000003136	FARSB	100	64.856	Tupaia_belangeri
ENSMUSG00000026245	Farsb	88	90.955	ENSTTRG00000009082	FARSB	88	90.955	Tursiops_truncatus
ENSMUSG00000026245	Farsb	100	83.193	ENSUAMG00000024613	FARSB	99	87.800	Ursus_americanus
ENSMUSG00000026245	Farsb	100	91.681	ENSUMAG00000017995	FARSB	100	91.681	Ursus_maritimus
ENSMUSG00000026245	Farsb	100	83.966	ENSVPAG00000006844	FARSB	99	87.778	Vicugna_pacos
ENSMUSG00000026245	Farsb	100	92.530	ENSVVUG00000024025	FARSB	100	92.530	Vulpes_vulpes
ENSMUSG00000026245	Farsb	100	78.003	ENSXETG00000002934	farsb	100	78.003	Xenopus_tropicalis
ENSMUSG00000026245	Farsb	100	75.254	ENSXMAG00000008280	farsb	100	67.572	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000287	magnesium ion binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0004812	aminoacyl-tRNA ligase activity	-	IEA	Function
GO:0004826	phenylalanine-tRNA ligase activity	21873635.	IBA	Function
GO:0004826	phenylalanine-tRNA ligase activity	-	ISO	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0006412	translation	-	IEA	Process
GO:0006432	phenylalanyl-tRNA aminoacylation	21873635.	IBA	Process
GO:0006432	phenylalanyl-tRNA aminoacylation	-	ISO	Process
GO:0009328	phenylalanine-tRNA ligase complex	21873635.	IBA	Component
GO:0009328	phenylalanine-tRNA ligase complex	-	ISO	Component
GO:0016874	ligase activity	-	IEA	Function
GO:0051290	protein heterotetramerization	-	ISO	Process