EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000026341 (Gene tree)
Gene ID: 74117
Gene Symbol: Actr3
Alias: 1200003A09Rik|Arp3
Full Name: ARP3 actin-related protein 3
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 42823
Position: chr1: 125392905-125435727
Accession: 1921367
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000189192	-	658	-	-	- (aa)	-	-
ENSMUST00000188362	-	1609	-	-	- (aa)	-	-
ENSMUST00000188827	-	517	-	-	- (aa)	-	-
ENSMUST00000178474	-	2565	-	ENSMUSP00000137503	418 (aa)	-	Q99JY9
ENSMUST00000185280	-	435	-	ENSMUSP00000140082	70 (aa)	-	A0A087WQ83
ENSMUST00000191004	-	610	-	ENSMUSP00000140953	129 (aa)	-	A0A087WS98
ENSMUST00000191544	-	654	-	ENSMUSP00000139674	155 (aa)	-	A0A087WP86
ENSMUST00000191578	-	1390	-	ENSMUSP00000139886	41 (aa)	-	A0A087WPR6
ENSMUST00000188497	-	856	-	ENSMUSP00000140535	216 (aa)	-	A0A087WRA1
ENSMUST00000027579	-	2554	-	ENSMUSP00000027579	418 (aa)	-	Q99JY9
ENSMUST00000186008	-	978	-	-	- (aa)	-	-
ENSMUST00000187460	-	667	-	ENSMUSP00000140000	161 (aa)	-	A0A087WQ14

Gene Model

Click here to download ENSMUSG00000026341's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000026341's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000026341	Actr3	97	92.647	FBgn0262716	Arp3	100	80.861	Drosophila_melanogaster
ENSMUSG00000026341	Actr3	100	100.000	ENSG00000115091	ACTR3	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000139	Golgi membrane	-	ISO	Component
GO:0000166	nucleotide binding	-	IEA	Function
GO:0001726	ruffle	-	ISO	Component
GO:0002102	podosome	-	ISO	Component
GO:0003779	actin binding	-	ISO	Function
GO:0005200	structural constituent of cytoskeleton	-	ISO	Function
GO:0005515	protein binding	11018051.11231575.15247266.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005884	actin filament	-	ISO	Component
GO:0005885	Arp2/3 protein complex	-	ISO	Component
GO:0005903	brush border	22114352.	IDA	Component
GO:0005911	cell-cell junction	23793062.	IDA	Component
GO:0005911	cell-cell junction	-	ISO	Component
GO:0007015	actin filament organization	-	IEA	Process
GO:0007163	establishment or maintenance of cell polarity	21494665.	IGI	Process
GO:0008356	asymmetric cell division	21494665.	IGI	Process
GO:0010592	positive regulation of lamellipodium assembly	-	ISO	Process
GO:0010763	positive regulation of fibroblast migration	-	ISO	Process
GO:0016344	meiotic chromosome movement towards spindle pole	23439682.	IGI	Process
GO:0030027	lamellipodium	14657280.	IDA	Component
GO:0030027	lamellipodium	-	ISO	Component
GO:0030030	cell projection organization	-	IEA	Process
GO:0030056	hemidesmosome	-	ISO	Component
GO:0030517	negative regulation of axon extension	-	ISO	Process
GO:0030838	positive regulation of actin filament polymerization	-	ISO	Process
GO:0031252	cell leading edge	-	ISO	Component
GO:0032092	positive regulation of protein binding	-	ISO	Process
GO:0033206	meiotic cytokinesis	21494665.	IGI	Process
GO:0034314	Arp2/3 complex-mediated actin nucleation	-	ISO	Process
GO:0042995	cell projection	-	IEA	Component
GO:0043519	regulation of myosin II filament organization	-	ISO	Process
GO:0045666	positive regulation of neuron differentiation	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0048471	perinuclear region of cytoplasm	-	ISO	Component
GO:0048708	astrocyte differentiation	-	ISO	Process
GO:0048711	positive regulation of astrocyte differentiation	-	ISO	Process
GO:0050775	positive regulation of dendrite morphogenesis	-	ISO	Process
GO:0051015	actin filament binding	-	ISO	Function
GO:0051117	ATPase binding	-	ISO	Function
GO:0051321	meiotic cell cycle	21494665.	IGI	Process
GO:0051491	positive regulation of filopodium assembly	-	ISO	Process
GO:0051653	spindle localization	21494665.	IGI	Process
GO:0051965	positive regulation of synapse assembly	-	ISO	Process
GO:0060076	excitatory synapse	-	ISO	Component
GO:0060271	cilium assembly	-	ISO	Process
GO:0061003	positive regulation of dendritic spine morphogenesis	-	ISO	Process
GO:0061825	podosome core	-	ISO	Component
GO:0061828	apical tubulobulbar complex	-	ISO	Component
GO:0061830	concave side of sperm head	-	ISO	Component
GO:0061831	apical ectoplasmic specialization	-	ISO	Component
GO:0061832	basal ectoplasmic specialization	-	ISO	Component
GO:0061851	leading edge of lamellipodium	-	ISO	Component
GO:0071346	cellular response to interferon-gamma	19144319.	IGI	Process
GO:0071356	cellular response to tumor necrosis factor	-	ISO	Process
GO:0071560	cellular response to transforming growth factor beta stimulus	-	ISO	Process
GO:0090314	positive regulation of protein targeting to membrane	-	ISO	Process
GO:0098794	postsynapse	-	ISO	Component
GO:0098974	postsynaptic actin cytoskeleton organization	-	ISO	Process
GO:0098978	glutamatergic synapse	-	ISO	Component
GO:1903078	positive regulation of protein localization to plasma membrane	-	ISO	Process
GO:1904171	negative regulation of bleb assembly	-	ISO	Process
GO:2000251	positive regulation of actin cytoskeleton reorganization	-	ISO	Process