EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000026374 (Gene tree)
Gene ID: 22099
Gene Symbol: Tsn
Alias: 2610034C24Rik|TB-RBP
Full Name: translin
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 16962 bases
Position: chr1:118294778-118311739
Accession: 109263
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000027623	Translin	PF01997.16	9.3e-57	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000186608	-	2997	-	-	- (aa)	-	-
ENSMUST00000186163	-	1059	-	-	- (aa)	-	-
ENSMUST00000027623	-	7063	-	ENSMUSP00000027623	228 (aa)	-	Q62348
ENSMUST00000188512	-	656	-	-	- (aa)	-	-
ENSMUST00000188882	-	465	-	-	- (aa)	-	-
ENSMUST00000189768	-	617	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000026374's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000026374's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000026374	Tsn	100	98.684	ENSG00000211460	TSN	100	98.684	Homo_sapiens
ENSMUSG00000026374	Tsn	100	78.509	ENSAPOG00000002063	tsn	100	78.509	Acanthochromis_polyacanthus
ENSMUSG00000026374	Tsn	100	98.246	ENSAMEG00000005055	TSN	100	98.246	Ailuropoda_melanoleuca
ENSMUSG00000026374	Tsn	100	79.386	ENSACIG00000021694	tsn	100	79.386	Amphilophus_citrinellus
ENSMUSG00000026374	Tsn	100	78.509	ENSAOCG00000015574	tsn	100	80.097	Amphiprion_ocellaris
ENSMUSG00000026374	Tsn	100	78.509	ENSAPEG00000001677	tsn	100	78.509	Amphiprion_percula
ENSMUSG00000026374	Tsn	99	77.333	ENSATEG00000004115	tsn	99	77.333	Anabas_testudineus
ENSMUSG00000026374	Tsn	60	30.519	ENSAPLG00000013433	-	53	30.519	Anas_platyrhynchos
ENSMUSG00000026374	Tsn	94	84.475	ENSACAG00000004757	TSN	99	84.475	Anolis_carolinensis
ENSMUSG00000026374	Tsn	100	99.123	ENSANAG00000026842	TSN	100	99.123	Aotus_nancymaae
ENSMUSG00000026374	Tsn	100	79.386	ENSACLG00000020831	tsn	100	79.386	Astatotilapia_calliptera
ENSMUSG00000026374	Tsn	100	78.509	ENSAMXG00000035417	tsn	100	78.509	Astyanax_mexicanus
ENSMUSG00000026374	Tsn	100	98.246	ENSBTAG00000006059	TSN	100	98.246	Bos_taurus
ENSMUSG00000026374	Tsn	50	88.496	ENSCJAG00000008511	-	88	88.496	Callithrix_jacchus
ENSMUSG00000026374	Tsn	100	98.684	ENSCJAG00000044533	-	100	98.684	Callithrix_jacchus
ENSMUSG00000026374	Tsn	100	99.123	ENSCJAG00000047222	-	100	99.123	Callithrix_jacchus
ENSMUSG00000026374	Tsn	99	98.238	ENSCAFG00000004700	TSN	94	98.238	Canis_familiaris
ENSMUSG00000026374	Tsn	100	98.246	ENSCAFG00020011747	TSN	100	98.246	Canis_lupus_dingo
ENSMUSG00000026374	Tsn	100	98.246	ENSCHIG00000010715	TSN	100	98.246	Capra_hircus
ENSMUSG00000026374	Tsn	100	97.807	ENSTSYG00000004395	TSN	100	97.807	Carlito_syrichta
ENSMUSG00000026374	Tsn	90	79.612	ENSCAPG00000015595	TSN	81	79.612	Cavia_aperea
ENSMUSG00000026374	Tsn	100	98.684	ENSCPOG00000035645	TSN	100	98.684	Cavia_porcellus
ENSMUSG00000026374	Tsn	66	84.211	ENSCCAG00000034886	-	84	84.211	Cebus_capucinus
ENSMUSG00000026374	Tsn	100	98.684	ENSCCAG00000026371	TSN	100	98.684	Cebus_capucinus
ENSMUSG00000026374	Tsn	100	98.684	ENSCATG00000032155	TSN	100	98.684	Cercocebus_atys
ENSMUSG00000026374	Tsn	100	98.684	ENSCLAG00000006171	TSN	100	98.684	Chinchilla_lanigera
ENSMUSG00000026374	Tsn	100	98.684	ENSCSAG00000016712	TSN	100	98.684	Chlorocebus_sabaeus
ENSMUSG00000026374	Tsn	97	75.676	ENSCPBG00000018116	-	97	75.676	Chrysemys_picta_bellii
ENSMUSG00000026374	Tsn	66	86.755	ENSCPBG00000013741	-	80	86.755	Chrysemys_picta_bellii
ENSMUSG00000026374	Tsn	95	45.161	ENSCING00000012612	-	99	45.161	Ciona_intestinalis
ENSMUSG00000026374	Tsn	97	43.498	ENSCSAVG00000009485	-	99	43.498	Ciona_savignyi
ENSMUSG00000026374	Tsn	100	98.684	ENSCANG00000041881	TSN	100	98.684	Colobus_angolensis_palliatus
ENSMUSG00000026374	Tsn	100	99.561	ENSCGRG00001018233	Tsn	100	99.561	Cricetulus_griseus_chok1gshd
ENSMUSG00000026374	Tsn	100	99.561	ENSCGRG00000008331	Tsn	100	99.561	Cricetulus_griseus_crigri
ENSMUSG00000026374	Tsn	100	75.877	ENSCSEG00000005825	tsn	100	75.877	Cynoglossus_semilaevis
ENSMUSG00000026374	Tsn	98	70.536	ENSCVAG00000022024	tsn	99	70.982	Cyprinodon_variegatus
ENSMUSG00000026374	Tsn	98	79.911	ENSDARG00000041830	tsn	99	79.911	Danio_rerio
ENSMUSG00000026374	Tsn	100	97.807	ENSDNOG00000025740	TSN	100	97.807	Dasypus_novemcinctus
ENSMUSG00000026374	Tsn	100	98.684	ENSDORG00000026251	-	100	98.684	Dipodomys_ordii
ENSMUSG00000026374	Tsn	94	53.271	FBgn0033528	trsn	90	53.271	Drosophila_melanogaster
ENSMUSG00000026374	Tsn	100	98.246	ENSEASG00005004774	TSN	100	98.246	Equus_asinus_asinus
ENSMUSG00000026374	Tsn	100	98.246	ENSECAG00000015930	TSN	100	98.246	Equus_caballus
ENSMUSG00000026374	Tsn	76	98.276	ENSEEUG00000013935	TSN	100	98.276	Erinaceus_europaeus
ENSMUSG00000026374	Tsn	100	79.386	ENSELUG00000007669	tsn	100	79.386	Esox_lucius
ENSMUSG00000026374	Tsn	73	74.850	ENSFCAG00000022306	-	94	74.850	Felis_catus
ENSMUSG00000026374	Tsn	100	98.246	ENSFCAG00000027149	TSN	100	98.246	Felis_catus
ENSMUSG00000026374	Tsn	91	85.646	ENSFALG00000013247	TSN	96	82.805	Ficedula_albicollis
ENSMUSG00000026374	Tsn	100	98.684	ENSFDAG00000012302	TSN	100	98.684	Fukomys_damarensis
ENSMUSG00000026374	Tsn	100	78.070	ENSFHEG00000015531	tsn	100	78.070	Fundulus_heteroclitus
ENSMUSG00000026374	Tsn	98	77.679	ENSGMOG00000009247	tsn	99	77.679	Gadus_morhua
ENSMUSG00000026374	Tsn	100	86.026	ENSGALG00000011652	TSN	100	86.026	Gallus_gallus
ENSMUSG00000026374	Tsn	100	78.070	ENSGAFG00000003816	tsn	100	78.070	Gambusia_affinis
ENSMUSG00000026374	Tsn	97	78.378	ENSGACG00000000235	tsn	97	78.378	Gasterosteus_aculeatus
ENSMUSG00000026374	Tsn	100	98.684	ENSGGOG00000002216	TSN	100	98.684	Gorilla_gorilla
ENSMUSG00000026374	Tsn	100	78.509	ENSHBUG00000002340	tsn	85	78.509	Haplochromis_burtoni
ENSMUSG00000026374	Tsn	100	98.684	ENSHGLG00000007038	TSN	100	98.684	Heterocephalus_glaber_female
ENSMUSG00000026374	Tsn	100	98.684	ENSHGLG00100000069	TSN	100	98.684	Heterocephalus_glaber_male
ENSMUSG00000026374	Tsn	98	77.578	ENSHCOG00000001756	tsn	99	77.578	Hippocampus_comes
ENSMUSG00000026374	Tsn	100	78.509	ENSIPUG00000021370	tsn	100	78.509	Ictalurus_punctatus
ENSMUSG00000026374	Tsn	100	98.684	ENSSTOG00000000972	TSN	100	98.684	Ictidomys_tridecemlineatus
ENSMUSG00000026374	Tsn	100	98.684	ENSJJAG00000006730	Tsn	100	98.684	Jaculus_jaculus
ENSMUSG00000026374	Tsn	100	78.509	ENSKMAG00000004996	tsn	100	78.509	Kryptolebias_marmoratus
ENSMUSG00000026374	Tsn	98	78.125	ENSLBEG00000012620	tsn	99	78.125	Labrus_bergylta
ENSMUSG00000026374	Tsn	98	59.471	ENSLACG00000005246	TSN	99	59.471	Latimeria_chalumnae
ENSMUSG00000026374	Tsn	98	79.464	ENSLOCG00000002191	tsn	97	79.464	Lepisosteus_oculatus
ENSMUSG00000026374	Tsn	100	90.909	ENSLAFG00000032428	TSN	100	90.909	Loxodonta_africana
ENSMUSG00000026374	Tsn	100	98.684	ENSMFAG00000044217	TSN	100	98.684	Macaca_fascicularis
ENSMUSG00000026374	Tsn	100	98.684	ENSMMUG00000021119	TSN	100	98.684	Macaca_mulatta
ENSMUSG00000026374	Tsn	100	98.684	ENSMNEG00000040632	TSN	100	98.684	Macaca_nemestrina
ENSMUSG00000026374	Tsn	54	98.387	ENSMLEG00000038656	TSN	96	98.387	Mandrillus_leucophaeus
ENSMUSG00000026374	Tsn	100	78.070	ENSMAMG00000019536	tsn	100	78.070	Mastacembelus_armatus
ENSMUSG00000026374	Tsn	100	79.386	ENSMZEG00005018715	tsn	85	79.386	Maylandia_zebra
ENSMUSG00000026374	Tsn	76	85.632	ENSMGAG00000011956	TSN	89	85.632	Meleagris_gallopavo
ENSMUSG00000026374	Tsn	92	97.619	ENSMAUG00000018800	Tsn	100	99.029	Mesocricetus_auratus
ENSMUSG00000026374	Tsn	100	98.684	ENSMICG00000015793	TSN	100	98.684	Microcebus_murinus
ENSMUSG00000026374	Tsn	100	98.684	ENSMOCG00000013248	Tsn	100	98.684	Microtus_ochrogaster
ENSMUSG00000026374	Tsn	90	77.670	ENSMMOG00000019661	tsn	100	77.670	Mola_mola
ENSMUSG00000026374	Tsn	100	93.013	ENSMODG00000000147	TSN	100	93.013	Monodelphis_domestica
ENSMUSG00000026374	Tsn	100	78.070	ENSMALG00000001827	tsn	100	78.070	Monopterus_albus
ENSMUSG00000026374	Tsn	100	100.000	MGP_PahariEiJ_G0027742	Tsn	100	100.000	Mus_pahari
ENSMUSG00000026374	Tsn	100	100.000	MGP_SPRETEiJ_G0015313	Tsn	100	100.000	Mus_spretus
ENSMUSG00000026374	Tsn	100	98.246	ENSMPUG00000001056	TSN	100	98.246	Mustela_putorius_furo
ENSMUSG00000026374	Tsn	90	97.573	ENSMLUG00000012656	TSN	100	97.573	Myotis_lucifugus
ENSMUSG00000026374	Tsn	54	31.206	ENSMLUG00000028551	-	83	31.206	Myotis_lucifugus
ENSMUSG00000026374	Tsn	100	99.123	ENSNGAG00000010353	Tsn	100	99.123	Nannospalax_galili
ENSMUSG00000026374	Tsn	100	78.947	ENSNBRG00000001193	tsn	100	78.947	Neolamprologus_brichardi
ENSMUSG00000026374	Tsn	100	98.684	ENSNLEG00000032773	TSN	100	98.684	Nomascus_leucogenys
ENSMUSG00000026374	Tsn	100	72.807	ENSMEUG00000006228	TSN	100	72.807	Notamacropus_eugenii
ENSMUSG00000026374	Tsn	61	78.417	ENSOPRG00000004858	-	99	78.417	Ochotona_princeps
ENSMUSG00000026374	Tsn	100	79.386	ENSODEG00000005998	-	100	79.386	Octodon_degus
ENSMUSG00000026374	Tsn	100	98.684	ENSODEG00000008386	-	100	98.684	Octodon_degus
ENSMUSG00000026374	Tsn	100	78.947	ENSONIG00000017060	tsn	100	78.947	Oreochromis_niloticus
ENSMUSG00000026374	Tsn	91	92.754	ENSOANG00000003457	TSN	100	92.754	Ornithorhynchus_anatinus
ENSMUSG00000026374	Tsn	100	98.246	ENSOCUG00000023529	TSN	100	98.246	Oryctolagus_cuniculus
ENSMUSG00000026374	Tsn	100	78.509	ENSORLG00000010049	tsn	100	78.509	Oryzias_latipes
ENSMUSG00000026374	Tsn	63	74.306	ENSORLG00020017000	-	84	74.306	Oryzias_latipes_hni
ENSMUSG00000026374	Tsn	98	78.571	ENSORLG00020016476	tsn	99	78.571	Oryzias_latipes_hni
ENSMUSG00000026374	Tsn	100	78.070	ENSORLG00015019192	tsn	100	78.070	Oryzias_latipes_hsok
ENSMUSG00000026374	Tsn	100	78.509	ENSOMEG00000016335	tsn	100	78.509	Oryzias_melastigma
ENSMUSG00000026374	Tsn	100	98.684	ENSOGAG00000030436	TSN	100	98.684	Otolemur_garnettii
ENSMUSG00000026374	Tsn	100	98.246	ENSOARG00000013339	TSN	100	98.246	Ovis_aries
ENSMUSG00000026374	Tsn	100	98.684	ENSPPAG00000032878	TSN	100	98.684	Pan_paniscus
ENSMUSG00000026374	Tsn	100	98.246	ENSPPRG00000006531	TSN	99	98.246	Panthera_pardus
ENSMUSG00000026374	Tsn	96	65.455	ENSPPRG00000004174	-	94	65.455	Panthera_pardus
ENSMUSG00000026374	Tsn	55	92.857	ENSPTIG00000012953	TSN	88	90.076	Panthera_tigris_altaica
ENSMUSG00000026374	Tsn	100	98.684	ENSPTRG00000012420	TSN	100	98.684	Pan_troglodytes
ENSMUSG00000026374	Tsn	100	98.684	ENSPANG00000000733	TSN	100	98.684	Papio_anubis
ENSMUSG00000026374	Tsn	98	78.125	ENSPKIG00000002005	tsn	99	78.125	Paramormyrops_kingsleyae
ENSMUSG00000026374	Tsn	77	88.571	ENSPSIG00000006064	TSN	96	88.571	Pelodiscus_sinensis
ENSMUSG00000026374	Tsn	96	79.545	ENSPMGG00000015287	tsn	97	79.545	Periophthalmus_magnuspinnatus
ENSMUSG00000026374	Tsn	97	66.968	ENSPMAG00000009161	tsn	95	66.968	Petromyzon_marinus
ENSMUSG00000026374	Tsn	91	95.652	ENSPCIG00000023491	TSN	100	95.631	Phascolarctos_cinereus
ENSMUSG00000026374	Tsn	100	78.509	ENSPFOG00000016063	tsn	100	78.509	Poecilia_formosa
ENSMUSG00000026374	Tsn	100	78.509	ENSPLAG00000010654	tsn	100	78.509	Poecilia_latipinna
ENSMUSG00000026374	Tsn	100	78.070	ENSPMEG00000023570	tsn	100	78.070	Poecilia_mexicana
ENSMUSG00000026374	Tsn	100	78.070	ENSPREG00000003481	tsn	100	78.070	Poecilia_reticulata
ENSMUSG00000026374	Tsn	100	98.684	ENSPPYG00000012774	TSN	100	98.684	Pongo_abelii
ENSMUSG00000026374	Tsn	76	96.552	ENSPCAG00000003549	TSN	100	96.552	Procavia_capensis
ENSMUSG00000026374	Tsn	100	98.684	ENSPCOG00000011045	TSN	100	98.684	Propithecus_coquereli
ENSMUSG00000026374	Tsn	100	98.246	ENSPVAG00000016702	TSN	100	98.246	Pteropus_vampyrus
ENSMUSG00000026374	Tsn	100	79.386	ENSPNYG00000012396	tsn	85	79.386	Pundamilia_nyererei
ENSMUSG00000026374	Tsn	100	78.509	ENSPNAG00000018140	tsn	100	78.509	Pygocentrus_nattereri
ENSMUSG00000026374	Tsn	100	99.561	ENSRNOG00000002319	Tsn	100	99.561	Rattus_norvegicus
ENSMUSG00000026374	Tsn	100	98.684	ENSRBIG00000041316	TSN	100	98.684	Rhinopithecus_bieti
ENSMUSG00000026374	Tsn	100	98.684	ENSRROG00000029954	TSN	100	98.684	Rhinopithecus_roxellana
ENSMUSG00000026374	Tsn	82	80.214	ENSSBOG00000015719	-	83	93.377	Saimiri_boliviensis_boliviensis
ENSMUSG00000026374	Tsn	100	99.123	ENSSBOG00000028579	TSN	100	99.123	Saimiri_boliviensis_boliviensis
ENSMUSG00000026374	Tsn	100	95.614	ENSSHAG00000011707	TSN	100	95.614	Sarcophilus_harrisii
ENSMUSG00000026374	Tsn	98	78.027	ENSSFOG00015020668	tsn	98	78.027	Scleropages_formosus
ENSMUSG00000026374	Tsn	100	77.632	ENSSMAG00000005822	tsn	100	77.632	Scophthalmus_maximus
ENSMUSG00000026374	Tsn	100	78.070	ENSSDUG00000011388	tsn	100	78.070	Seriola_dumerili
ENSMUSG00000026374	Tsn	100	78.070	ENSSLDG00000008206	tsn	100	78.070	Seriola_lalandi_dorsalis
ENSMUSG00000026374	Tsn	100	67.105	ENSSARG00000007193	-	100	67.105	Sorex_araneus
ENSMUSG00000026374	Tsn	100	85.088	ENSSPUG00000017518	TSN	100	85.088	Sphenodon_punctatus
ENSMUSG00000026374	Tsn	100	78.509	ENSSPAG00000009283	tsn	100	78.509	Stegastes_partitus
ENSMUSG00000026374	Tsn	100	97.368	ENSSSCG00000015729	TSN	100	97.368	Sus_scrofa
ENSMUSG00000026374	Tsn	100	83.843	ENSTGUG00000004445	TSN	100	83.843	Taeniopygia_guttata
ENSMUSG00000026374	Tsn	97	77.376	ENSTRUG00000013691	tsn	98	77.376	Takifugu_rubripes
ENSMUSG00000026374	Tsn	97	76.923	ENSTNIG00000015707	tsn	97	76.923	Tetraodon_nigroviridis
ENSMUSG00000026374	Tsn	100	97.807	ENSTBEG00000015319	TSN	100	97.807	Tupaia_belangeri
ENSMUSG00000026374	Tsn	100	98.246	ENSTTRG00000005854	TSN	100	98.246	Tursiops_truncatus
ENSMUSG00000026374	Tsn	100	98.246	ENSUAMG00000021618	TSN	100	98.246	Ursus_americanus
ENSMUSG00000026374	Tsn	100	96.930	ENSUMAG00000008516	TSN	100	96.930	Ursus_maritimus
ENSMUSG00000026374	Tsn	57	72.093	ENSVPAG00000009874	-	100	72.093	Vicugna_pacos
ENSMUSG00000026374	Tsn	91	97.585	ENSVVUG00000027555	TSN	99	98.058	Vulpes_vulpes
ENSMUSG00000026374	Tsn	100	75.877	ENSXETG00000000838	tsn	100	75.877	Xenopus_tropicalis
ENSMUSG00000026374	Tsn	54	74.194	ENSXCOG00000018514	tsn	95	74.194	Xiphophorus_couchianus
ENSMUSG00000026374	Tsn	100	78.509	ENSXMAG00000022538	tsn	100	78.509	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	IEA	Function
GO:0003697	single-stranded DNA binding	21873635.	IBA	Function
GO:0003697	single-stranded DNA binding	-	ISO	Function
GO:0003723	RNA binding	11278549.15987823.	IDA	Function
GO:0003729	mRNA binding	15987823.	IDA	Function
GO:0004518	nuclease activity	-	IEA	Function
GO:0004519	endonuclease activity	-	IEA	Function
GO:0004521	endoribonuclease activity	21873635.	IBA	Function
GO:0005515	protein binding	11278549.12036294.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	11278549.15987823.	IDA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	11278549.15987823.	IDA	Component
GO:0005737	cytoplasm	12036294.	TAS	Component
GO:0016070	RNA metabolic process	-	IEA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0042802	identical protein binding	-	ISO	Function
GO:0043565	sequence-specific DNA binding	21873635.	IBA	Function
GO:0043565	sequence-specific DNA binding	-	ISO	Function
GO:0044877	protein-containing complex binding	-	ISO	Function