EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000140489	-	1494	-	ENSMUSP00000115253	116 (aa)	-	F6S6E4
ENSMUST00000145968	-	530	-	ENSMUSP00000115795	176 (aa)	-	F6SJR1
ENSMUST00000151734	-	2570	-	-	- (aa)	-	-
ENSMUST00000027768	-	8506	XM_006496800	ENSMUSP00000027768	2243 (aa)	XP_006496863	Q8CJF7
ENSMUST00000127250	-	680	-	ENSMUSP00000120551	35 (aa)	-	F6XUM6
ENSMUST00000192645	-	3156	-	-	- (aa)	-	-
ENSMUST00000147137	-	746	-	-	- (aa)	-	-
ENSMUST00000125816	-	769	-	ENSMUSP00000119738	104 (aa)	-	F6QTR3
ENSMUST00000194536	-	3232	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000026491	Ahctf1	100	70.333	ENSG00000153207	AHCTF1	100	70.202	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000775	chromosome, centromeric region	-	IEA	Component
GO:0000776	kinetochore	-	IEA	Component
GO:0000777	condensed chromosome kinetochore	-	ISO	Component
GO:0000785	chromatin	-	ISO	Component
GO:0003677	DNA binding	-	IEA	Function
GO:0003700	DNA-binding transcription factor activity	11952839.	IMP	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005643	nuclear pore	-	ISO	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005737	cytoplasm	11952839.	IDA	Component
GO:0006355	regulation of transcription, DNA-templated	11952839.	IDA	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0007275	multicellular organism development	-	IEA	Process
GO:0015031	protein transport	-	IEA	Process
GO:0016363	nuclear matrix	11952839.	IDA	Component
GO:0030097	hemopoiesis	17098863.	TAS	Process
GO:0031080	nuclear pore outer ring	-	ISO	Component
GO:0031965	nuclear membrane	-	ISO	Component
GO:0032465	regulation of cytokinesis	-	ISO	Process
GO:0051028	mRNA transport	-	IEA	Process
GO:0051292	nuclear pore complex assembly	-	ISO	Process
GO:0051301	cell division	-	IEA	Process