EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000026553 (Gene tree)
Gene ID: 12847
Gene Symbol: Copa
Alias: xenin
Full Name: coatomer protein complex subunit alpha
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 39802
Position: chr1: 172082529-172122330
Accession: 1334462
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000152403	-	657	-	ENSMUSP00000123214	143 (aa)	-	F6XJN3
ENSMUST00000135192	-	4622	XM_011238748	ENSMUSP00000118179	1224 (aa)	XP_011237050	Q8CIE6
ENSMUST00000138407	-	2973	-	-	- (aa)	-	-
ENSMUST00000142765	-	520	-	-	- (aa)	-	-
ENSMUST00000133909	-	2505	-	-	- (aa)	-	-
ENSMUST00000122845	-	2578	-	-	- (aa)	-	-
ENSMUST00000027833	-	4351	-	ENSMUSP00000027833	1233 (aa)	-	F8WHL2
ENSMUST00000126634	-	2534	-	-	- (aa)	-	-
ENSMUST00000124289	-	1627	-	ENSMUSP00000118899	78 (aa)	-	D6RH55
ENSMUST00000150298	-	457	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000026553's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000026553's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000026553	Copa	100	98.459	ENSG00000122218	COPA	100	98.459	Homo_sapiens
ENSMUSG00000026553	Copa	97	55.072	YDL145C	COP1	99	44.156	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005179	hormone activity	-	IEA	Function
GO:0005198	structural molecule activity	-	IEA	Function
GO:0005576	extracellular region	-	IEA	Component
GO:0005615	extracellular space	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005794	Golgi apparatus	-	IEA	Component
GO:0006886	intracellular protein transport	21873635.	IBA	Process
GO:0006888	ER to Golgi vesicle-mediated transport	21873635.	IBA	Process
GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	21873635.	IBA	Process
GO:0006891	intra-Golgi vesicle-mediated transport	21873635.	IBA	Process
GO:0015031	protein transport	-	IEA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016192	vesicle-mediated transport	-	IEA	Process
GO:0030117	membrane coat	-	IEA	Component
GO:0030126	COPI vesicle coat	21873635.	IBA	Component
GO:0030126	COPI vesicle coat	-	ISO	Component
GO:0030157	pancreatic juice secretion	-	ISO	Process
GO:0031410	cytoplasmic vesicle	-	IEA	Component