EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000026728 (Gene tree)
Gene ID: 22352
Gene Symbol: Vim
Alias: -
Full Name: vimentin
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 8900
Position: chr2: 13573927-13582826
Accession: 98932
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000191615	-	2926	-	-	- (aa)	-	-
ENSMUST00000155605	-	926	-	-	- (aa)	-	-
ENSMUST00000148248	-	535	-	-	- (aa)	-	-
ENSMUST00000028062	-	2193	-	ENSMUSP00000028062	466 (aa)	-	P20152
ENSMUST00000141365	-	574	-	ENSMUSP00000114742	134 (aa)	-	A2AKJ2
ENSMUST00000193675	-	1777	-	ENSMUSP00000141494	427 (aa)	-	A0A0A6YWC8

Gene Model

Click here to download ENSMUSG00000026728's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu05169	Epstein-Barr virus infection	KEGG
mmu05206	MicroRNAs in cancer	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000026728's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000026728	Vim	100	97.425	ENSG00000026025	VIM	100	97.425	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003725	double-stranded RNA binding	21266579.	ISO	Function
GO:0005198	structural molecule activity	12177195.	IMP	Function
GO:0005200	structural constituent of cytoskeleton	-	ISO	Function
GO:0005212	structural constituent of eye lens	15037121.	IDA	Function
GO:0005515	protein binding	11895474.12244133.12379728.17015463.17356066.18178558.18827015.19029034.21418524.	IPI	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	15965470.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005777	peroxisome	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005844	polysome	-	ISO	Component
GO:0005856	cytoskeleton	16769727.	ISO	Component
GO:0005882	intermediate filament	2493000.8188282.11487638.15037121.17882221.20103531.	IDA	Component
GO:0005882	intermediate filament	-	ISO	Component
GO:0005886	plasma membrane	18178558.	IDA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0008022	protein C-terminus binding	-	ISO	Function
GO:0010628	positive regulation of gene expression	19420356.	IMP	Process
GO:0010977	negative regulation of neuron projection development	11487638.	IGI	Process
GO:0014002	astrocyte development	11487638.	IGI	Process
GO:0019900	kinase binding	-	ISO	Function
GO:0019901	protein kinase binding	-	ISO	Function
GO:0019904	protein domain specific binding	-	ISO	Function
GO:0030424	axon	-	ISO	Component
GO:0031252	cell leading edge	15958512.	IDA	Component
GO:0032967	positive regulation of collagen biosynthetic process	-	ISO	Process
GO:0042802	identical protein binding	-	ISO	Function
GO:0042995	cell projection	10989258.	IDA	Component
GO:0042995	cell projection	-	ISO	Component
GO:0043005	neuron projection	16052496.	IDA	Component
GO:0043488	regulation of mRNA stability	-	ISO	Process
GO:0044297	cell body	-	ISO	Component
GO:0045098	type III intermediate filament	12177195.	TAS	Component
GO:0045103	intermediate filament-based process	12177195.	IMP	Process
GO:0045109	intermediate filament organization	11487638.	IGI	Process
GO:0045335	phagocytic vesicle	19144319.	IDA	Component
GO:0045727	positive regulation of translation	-	ISO	Process
GO:0048471	perinuclear region of cytoplasm	-	ISO	Component
GO:0050770	regulation of axonogenesis	-	ISO	Process
GO:0051721	protein phosphatase 2A binding	-	ISO	Function
GO:0060020	Bergmann glial cell differentiation	10816608.	IMP	Process
GO:0060252	positive regulation of glial cell proliferation	-	ISO	Process
GO:0060395	SMAD protein signal transduction	23390484.	IDA	Process
GO:0070307	lens fiber cell development	15037121.	IDA	Process
GO:0071222	cellular response to lipopolysaccharide	-	ISO	Process
GO:0071225	cellular response to muramyl dipeptide	-	ISO	Process
GO:0071346	cellular response to interferon-gamma	19144319.	IDA	Process
GO:0097110	scaffold protein binding	-	ISO	Function
GO:1900147	regulation of Schwann cell migration	-	ISO	Process
GO:1990254	keratin filament binding	-	ISO	Function
GO:1990904	ribonucleoprotein complex	-	ISO	Component