EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000027067 (Gene tree)
Gene ID: 20833
Gene Symbol: Ssrp1
Alias: Hmg1-rs1|Hmgi-rs3|Hmgox|T160
Full Name: structure specific recognition protein 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 9876
Position: chr2: 85037234-85047109
Accession: 107912
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000077798	-	2739	XM_006499070	ENSMUSP00000076971	708 (aa)	XP_006499133	Q08943
ENSMUST00000123467	-	745	-	-	- (aa)	-	-
ENSMUST00000142359	-	550	-	-	- (aa)	-	-
ENSMUST00000168266	-	2721	-	ENSMUSP00000127058	708 (aa)	-	Q08943
ENSMUST00000130729	-	2069	-	ENSMUSP00000121639	623 (aa)	-	A2AW05
ENSMUST00000145097	-	679	-	-	- (aa)	-	-
ENSMUST00000127069	-	451	-	-	- (aa)	-	-
ENSMUST00000146530	-	679	-	-	- (aa)	-	-
ENSMUST00000135414	-	920	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000027067's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000027067's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000027067	Ssrp1	100	97.753	ENSG00000149136	SSRP1	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	IEA	Function
GO:0003682	chromatin binding	22252316.	IDA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005694	chromosome	-	IEA	Component
GO:0006260	DNA replication	-	IEA	Process
GO:0006281	DNA repair	-	IEA	Process
GO:0006974	cellular response to DNA damage stimulus	-	IEA	Process