EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000027176 (Gene tree)
Gene ID: 228410
Gene Symbol: Cstf3
Alias: 4732468G05Rik
Full Name: cleavage stimulation factor%2C 3' pre-RNA%2C subunit 3
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 74907 bases
Position: chr2:104590523-104665429
Accession: 1351825
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000028599	Suf	PF05843.14	1.5e-83	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000028599	-	2817	-	ENSMUSP00000028599	717 (aa)	-	Q99LI7
ENSMUST00000122900	-	2589	-	-	- (aa)	-	-
ENSMUST00000137961	-	644	-	-	- (aa)	-	-
ENSMUST00000126539	-	582	-	-	- (aa)	-	-
ENSMUST00000131761	-	421	-	-	- (aa)	-	-
ENSMUST00000124944	-	626	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000027176's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000027176's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000027176	Cstf3	100	99.303	ENSG00000176102	CSTF3	100	99.303	Homo_sapiens
ENSMUSG00000027176	Cstf3	100	91.226	ENSAPOG00000014054	cstf3	100	91.226	Acanthochromis_polyacanthus
ENSMUSG00000027176	Cstf3	99	99.436	ENSAMEG00000007187	CSTF3	98	99.436	Ailuropoda_melanoleuca
ENSMUSG00000027176	Cstf3	87	85.760	ENSACIG00000005539	cstf3	100	85.760	Amphilophus_citrinellus
ENSMUSG00000027176	Cstf3	100	90.947	ENSAOCG00000010930	cstf3	100	90.947	Amphiprion_ocellaris
ENSMUSG00000027176	Cstf3	100	90.947	ENSAPEG00000007903	cstf3	100	90.947	Amphiprion_percula
ENSMUSG00000027176	Cstf3	100	90.808	ENSATEG00000000190	cstf3	100	90.808	Anabas_testudineus
ENSMUSG00000027176	Cstf3	99	97.881	ENSAPLG00000007217	CSTF3	100	97.881	Anas_platyrhynchos
ENSMUSG00000027176	Cstf3	100	95.543	ENSACAG00000002823	CSTF3	100	95.543	Anolis_carolinensis
ENSMUSG00000027176	Cstf3	100	99.303	ENSANAG00000020699	CSTF3	100	99.520	Aotus_nancymaae
ENSMUSG00000027176	Cstf3	98	91.489	ENSACLG00000007820	cstf3	100	91.086	Astatotilapia_calliptera
ENSMUSG00000027176	Cstf3	100	90.529	ENSAMXG00000014198	cstf3	100	90.808	Astyanax_mexicanus
ENSMUSG00000027176	Cstf3	100	99.303	ENSBTAG00000008617	CSTF3	100	99.555	Bos_taurus
ENSMUSG00000027176	Cstf3	97	49.451	WBGene00006307	suf-1	99	49.451	Caenorhabditis_elegans
ENSMUSG00000027176	Cstf3	100	99.303	ENSCJAG00000005533	CSTF3	100	99.520	Callithrix_jacchus
ENSMUSG00000027176	Cstf3	100	99.303	ENSCAFG00000007264	CSTF3	100	99.303	Canis_familiaris
ENSMUSG00000027176	Cstf3	99	99.577	ENSCAFG00020002715	CSTF3	99	99.577	Canis_lupus_dingo
ENSMUSG00000027176	Cstf3	98	98.009	ENSCHIG00000016418	CSTF3	100	99.520	Capra_hircus
ENSMUSG00000027176	Cstf3	99	99.154	ENSTSYG00000000451	CSTF3	100	99.154	Carlito_syrichta
ENSMUSG00000027176	Cstf3	83	96.023	ENSCAPG00000010958	CSTF3	98	96.023	Cavia_aperea
ENSMUSG00000027176	Cstf3	100	99.163	ENSCPOG00000005545	CSTF3	100	99.163	Cavia_porcellus
ENSMUSG00000027176	Cstf3	100	99.303	ENSCCAG00000024790	CSTF3	100	99.520	Cebus_capucinus
ENSMUSG00000027176	Cstf3	100	99.303	ENSCATG00000007080	CSTF3	100	99.520	Cercocebus_atys
ENSMUSG00000027176	Cstf3	100	99.303	ENSCLAG00000016179	CSTF3	100	99.303	Chinchilla_lanigera
ENSMUSG00000027176	Cstf3	78	100.000	ENSCHOG00000002497	CSTF3	79	100.000	Choloepus_hoffmanni
ENSMUSG00000027176	Cstf3	100	97.214	ENSCPBG00000006753	CSTF3	100	97.214	Chrysemys_picta_bellii
ENSMUSG00000027176	Cstf3	99	61.958	ENSCING00000006401	-	98	61.958	Ciona_intestinalis
ENSMUSG00000027176	Cstf3	98	61.367	ENSCSAVG00000004851	-	100	61.367	Ciona_savignyi
ENSMUSG00000027176	Cstf3	100	99.303	ENSCANG00000035468	CSTF3	100	99.520	Colobus_angolensis_palliatus
ENSMUSG00000027176	Cstf3	100	100.000	ENSCGRG00001014773	Cstf3	100	100.000	Cricetulus_griseus_chok1gshd
ENSMUSG00000027176	Cstf3	100	100.000	ENSCGRG00000004142	Cstf3	100	100.000	Cricetulus_griseus_crigri
ENSMUSG00000027176	Cstf3	100	91.213	ENSCSEG00000014283	cstf3	100	91.213	Cynoglossus_semilaevis
ENSMUSG00000027176	Cstf3	100	90.111	ENSCVAG00000019739	cstf3	100	90.111	Cyprinodon_variegatus
ENSMUSG00000027176	Cstf3	100	90.795	ENSDARG00000018904	cstf3	100	90.795	Danio_rerio
ENSMUSG00000027176	Cstf3	99	99.154	ENSDNOG00000007366	CSTF3	99	99.154	Dasypus_novemcinctus
ENSMUSG00000027176	Cstf3	99	91.678	ENSDORG00000005898	Cstf3	99	91.678	Dipodomys_ordii
ENSMUSG00000027176	Cstf3	98	57.280	FBgn0003559	su(f)	98	57.280	Drosophila_melanogaster
ENSMUSG00000027176	Cstf3	90	94.081	ENSETEG00000017097	CSTF3	90	94.081	Echinops_telfairi
ENSMUSG00000027176	Cstf3	84	74.215	ENSEBUG00000015459	cstf3	96	74.215	Eptatretus_burgeri
ENSMUSG00000027176	Cstf3	98	99.714	ENSEASG00005019884	CSTF3	100	99.714	Equus_asinus_asinus
ENSMUSG00000027176	Cstf3	98	99.714	ENSECAG00000023338	CSTF3	100	99.714	Equus_caballus
ENSMUSG00000027176	Cstf3	100	93.724	ENSEEUG00000015167	CSTF3	100	93.724	Erinaceus_europaeus
ENSMUSG00000027176	Cstf3	100	90.098	ENSELUG00000023393	cstf3	100	90.098	Esox_lucius
ENSMUSG00000027176	Cstf3	100	99.163	ENSFCAG00000030711	CSTF3	100	99.163	Felis_catus
ENSMUSG00000027176	Cstf3	93	98.649	ENSFALG00000010764	CSTF3	100	96.774	Ficedula_albicollis
ENSMUSG00000027176	Cstf3	100	99.163	ENSFDAG00000012082	CSTF3	100	99.163	Fukomys_damarensis
ENSMUSG00000027176	Cstf3	100	90.251	ENSFHEG00000020623	cstf3	100	90.251	Fundulus_heteroclitus
ENSMUSG00000027176	Cstf3	100	89.291	ENSGMOG00000012275	cstf3	100	89.291	Gadus_morhua
ENSMUSG00000027176	Cstf3	100	97.354	ENSGALG00000011685	CSTF3	100	97.354	Gallus_gallus
ENSMUSG00000027176	Cstf3	100	90.529	ENSGAFG00000002181	cstf3	100	90.529	Gambusia_affinis
ENSMUSG00000027176	Cstf3	100	90.390	ENSGACG00000015997	cstf3	100	90.390	Gasterosteus_aculeatus
ENSMUSG00000027176	Cstf3	99	97.475	ENSGAGG00000006200	CSTF3	99	97.475	Gopherus_agassizii
ENSMUSG00000027176	Cstf3	99	93.653	ENSGGOG00000026591	CSTF3	99	93.653	Gorilla_gorilla
ENSMUSG00000027176	Cstf3	98	91.489	ENSHBUG00000016656	cstf3	100	91.086	Haplochromis_burtoni
ENSMUSG00000027176	Cstf3	100	99.024	ENSHGLG00000017834	CSTF3	100	99.024	Heterocephalus_glaber_female
ENSMUSG00000027176	Cstf3	100	99.024	ENSHGLG00100018042	CSTF3	100	99.024	Heterocephalus_glaber_male
ENSMUSG00000027176	Cstf3	98	89.235	ENSHCOG00000015218	cstf3	100	88.997	Hippocampus_comes
ENSMUSG00000027176	Cstf3	100	90.098	ENSIPUG00000013170	CSTF3	100	90.098	Ictalurus_punctatus
ENSMUSG00000027176	Cstf3	100	99.303	ENSSTOG00000013306	CSTF3	100	99.303	Ictidomys_tridecemlineatus
ENSMUSG00000027176	Cstf3	99	87.448	ENSJJAG00000018430	Cstf3	99	87.448	Jaculus_jaculus
ENSMUSG00000027176	Cstf3	99	90.210	ENSKMAG00000010916	cstf3	99	90.210	Kryptolebias_marmoratus
ENSMUSG00000027176	Cstf3	100	89.972	ENSLBEG00000002306	cstf3	100	89.972	Labrus_bergylta
ENSMUSG00000027176	Cstf3	100	93.445	ENSLACG00000017296	CSTF3	100	93.445	Latimeria_chalumnae
ENSMUSG00000027176	Cstf3	100	92.748	ENSLOCG00000004415	cstf3	100	92.748	Lepisosteus_oculatus
ENSMUSG00000027176	Cstf3	100	99.163	ENSLAFG00000008712	CSTF3	100	99.163	Loxodonta_africana
ENSMUSG00000027176	Cstf3	100	99.303	ENSMFAG00000029516	CSTF3	100	99.520	Macaca_fascicularis
ENSMUSG00000027176	Cstf3	100	99.303	ENSMMUG00000002542	CSTF3	100	99.303	Macaca_mulatta
ENSMUSG00000027176	Cstf3	100	99.303	ENSMNEG00000021807	CSTF3	100	99.520	Macaca_nemestrina
ENSMUSG00000027176	Cstf3	100	99.303	ENSMLEG00000039594	CSTF3	100	99.520	Mandrillus_leucophaeus
ENSMUSG00000027176	Cstf3	100	90.669	ENSMAMG00000020423	cstf3	100	90.669	Mastacembelus_armatus
ENSMUSG00000027176	Cstf3	98	91.489	ENSMZEG00005012082	cstf3	100	91.086	Maylandia_zebra
ENSMUSG00000027176	Cstf3	100	97.493	ENSMGAG00000001383	CSTF3	100	97.493	Meleagris_gallopavo
ENSMUSG00000027176	Cstf3	100	99.861	ENSMAUG00000002487	Cstf3	100	99.861	Mesocricetus_auratus
ENSMUSG00000027176	Cstf3	100	99.024	ENSMICG00000004784	CSTF3	100	99.200	Microcebus_murinus
ENSMUSG00000027176	Cstf3	100	100.000	ENSMOCG00000017583	Cstf3	100	100.000	Microtus_ochrogaster
ENSMUSG00000027176	Cstf3	99	90.986	ENSMMOG00000016026	cstf3	95	90.986	Mola_mola
ENSMUSG00000027176	Cstf3	100	83.821	ENSMODG00000025205	-	100	83.821	Monodelphis_domestica
ENSMUSG00000027176	Cstf3	100	98.605	ENSMODG00000009745	-	100	98.605	Monodelphis_domestica
ENSMUSG00000027176	Cstf3	100	90.669	ENSMALG00000012050	cstf3	100	90.669	Monopterus_albus
ENSMUSG00000027176	Cstf3	100	100.000	MGP_CAROLIEiJ_G0024026	Cstf3	100	100.000	Mus_caroli
ENSMUSG00000027176	Cstf3	100	100.000	MGP_PahariEiJ_G0025464	Cstf3	100	100.000	Mus_pahari
ENSMUSG00000027176	Cstf3	100	100.000	MGP_SPRETEiJ_G0024939	Cstf3	100	100.000	Mus_spretus
ENSMUSG00000027176	Cstf3	100	99.163	ENSMPUG00000011457	CSTF3	100	99.163	Mustela_putorius_furo
ENSMUSG00000027176	Cstf3	100	95.955	ENSMLUG00000026022	-	100	95.955	Myotis_lucifugus
ENSMUSG00000027176	Cstf3	99	99.015	ENSMLUG00000003073	-	99	99.015	Myotis_lucifugus
ENSMUSG00000027176	Cstf3	100	99.721	ENSNGAG00000010677	Cstf3	100	99.721	Nannospalax_galili
ENSMUSG00000027176	Cstf3	87	90.720	ENSNBRG00000007345	cstf3	100	90.720	Neolamprologus_brichardi
ENSMUSG00000027176	Cstf3	100	99.303	ENSNLEG00000017901	CSTF3	100	99.520	Nomascus_leucogenys
ENSMUSG00000027176	Cstf3	73	94.646	ENSMEUG00000005640	-	100	94.646	Notamacropus_eugenii
ENSMUSG00000027176	Cstf3	67	100.000	ENSOPRG00000000199	-	67	100.000	Ochotona_princeps
ENSMUSG00000027176	Cstf3	100	99.303	ENSODEG00000016737	-	100	99.303	Octodon_degus
ENSMUSG00000027176	Cstf3	89	86.792	ENSODEG00000006311	-	97	86.792	Octodon_degus
ENSMUSG00000027176	Cstf3	98	91.489	ENSONIG00000005563	cstf3	100	91.086	Oreochromis_niloticus
ENSMUSG00000027176	Cstf3	90	96.923	ENSOANG00000015140	CSTF3	100	96.923	Ornithorhynchus_anatinus
ENSMUSG00000027176	Cstf3	100	99.163	ENSOCUG00000015417	CSTF3	100	99.163	Oryctolagus_cuniculus
ENSMUSG00000027176	Cstf3	100	90.656	ENSORLG00000009762	cstf3	100	90.656	Oryzias_latipes
ENSMUSG00000027176	Cstf3	100	90.656	ENSORLG00020005540	cstf3	100	90.656	Oryzias_latipes_hni
ENSMUSG00000027176	Cstf3	100	90.516	ENSORLG00015003551	cstf3	100	90.516	Oryzias_latipes_hsok
ENSMUSG00000027176	Cstf3	100	89.958	ENSOMEG00000003848	cstf3	100	89.958	Oryzias_melastigma
ENSMUSG00000027176	Cstf3	100	98.889	ENSOGAG00000010229	CSTF3	100	98.889	Otolemur_garnettii
ENSMUSG00000027176	Cstf3	90	99.378	ENSOARG00000017271	CSTF3	99	99.378	Ovis_aries
ENSMUSG00000027176	Cstf3	99	95.910	ENSPPAG00000027358	CSTF3	99	95.910	Pan_paniscus
ENSMUSG00000027176	Cstf3	100	99.163	ENSPPRG00000016852	CSTF3	100	99.163	Panthera_pardus
ENSMUSG00000027176	Cstf3	100	99.163	ENSPTIG00000008716	CSTF3	100	99.163	Panthera_tigris_altaica
ENSMUSG00000027176	Cstf3	100	99.303	ENSPTRG00000003485	CSTF3	100	99.303	Pan_troglodytes
ENSMUSG00000027176	Cstf3	100	99.303	ENSPANG00000013722	CSTF3	100	99.303	Papio_anubis
ENSMUSG00000027176	Cstf3	100	92.190	ENSPKIG00000023648	cstf3	100	92.190	Paramormyrops_kingsleyae
ENSMUSG00000027176	Cstf3	100	96.797	ENSPSIG00000009173	CSTF3	100	96.797	Pelodiscus_sinensis
ENSMUSG00000027176	Cstf3	76	94.881	ENSPMGG00000000164	cstf3	99	94.881	Periophthalmus_magnuspinnatus
ENSMUSG00000027176	Cstf3	100	99.861	ENSPEMG00000011481	Cstf3	100	99.861	Peromyscus_maniculatus_bairdii
ENSMUSG00000027176	Cstf3	99	80.307	ENSPMAG00000007282	cstf3	99	80.307	Petromyzon_marinus
ENSMUSG00000027176	Cstf3	100	80.780	ENSPCIG00000030419	-	90	81.476	Phascolarctos_cinereus
ENSMUSG00000027176	Cstf3	99	95.634	ENSPCIG00000026406	-	100	97.760	Phascolarctos_cinereus
ENSMUSG00000027176	Cstf3	100	90.669	ENSPFOG00000017239	cstf3	100	90.669	Poecilia_formosa
ENSMUSG00000027176	Cstf3	100	90.669	ENSPLAG00000009456	cstf3	100	90.669	Poecilia_latipinna
ENSMUSG00000027176	Cstf3	100	90.669	ENSPMEG00000010320	cstf3	100	90.669	Poecilia_mexicana
ENSMUSG00000027176	Cstf3	100	90.669	ENSPREG00000013549	cstf3	100	90.669	Poecilia_reticulata
ENSMUSG00000027176	Cstf3	100	99.303	ENSPPYG00000003375	CSTF3	100	99.303	Pongo_abelii
ENSMUSG00000027176	Cstf3	71	99.652	ENSPCAG00000008025	-	71	99.652	Procavia_capensis
ENSMUSG00000027176	Cstf3	100	93.863	ENSPCOG00000014417	CSTF3	100	93.863	Propithecus_coquereli
ENSMUSG00000027176	Cstf3	100	94.003	ENSPVAG00000002350	CSTF3	100	94.003	Pteropus_vampyrus
ENSMUSG00000027176	Cstf3	98	91.489	ENSPNYG00000018259	cstf3	100	91.086	Pundamilia_nyererei
ENSMUSG00000027176	Cstf3	100	91.771	ENSPNAG00000020182	cstf3	100	91.771	Pygocentrus_nattereri
ENSMUSG00000027176	Cstf3	87	99.680	ENSRNOG00000012089	Cstf3	100	99.680	Rattus_norvegicus
ENSMUSG00000027176	Cstf3	99	98.166	ENSRBIG00000044258	CSTF3	100	99.520	Rhinopithecus_bieti
ENSMUSG00000027176	Cstf3	100	99.303	ENSRROG00000043450	CSTF3	100	99.520	Rhinopithecus_roxellana
ENSMUSG00000027176	Cstf3	100	99.303	ENSSBOG00000024764	CSTF3	100	99.520	Saimiri_boliviensis_boliviensis
ENSMUSG00000027176	Cstf3	100	85.077	ENSSHAG00000003135	-	99	85.077	Sarcophilus_harrisii
ENSMUSG00000027176	Cstf3	100	97.629	ENSSHAG00000018128	-	100	97.629	Sarcophilus_harrisii
ENSMUSG00000027176	Cstf3	100	91.911	ENSSFOG00015022133	cstf3	100	91.911	Scleropages_formosus
ENSMUSG00000027176	Cstf3	100	90.111	ENSSMAG00000002197	cstf3	100	90.111	Scophthalmus_maximus
ENSMUSG00000027176	Cstf3	100	90.947	ENSSDUG00000020426	cstf3	100	90.947	Seriola_dumerili
ENSMUSG00000027176	Cstf3	100	91.086	ENSSLDG00000025649	cstf3	100	91.086	Seriola_lalandi_dorsalis
ENSMUSG00000027176	Cstf3	100	98.884	ENSSARG00000000391	CSTF3	100	98.884	Sorex_araneus
ENSMUSG00000027176	Cstf3	96	96.961	ENSSPUG00000010546	CSTF3	100	96.961	Sphenodon_punctatus
ENSMUSG00000027176	Cstf3	100	91.086	ENSSPAG00000004958	cstf3	100	91.086	Stegastes_partitus
ENSMUSG00000027176	Cstf3	99	98.883	ENSSSCG00000040954	CSTF3	100	98.883	Sus_scrofa
ENSMUSG00000027176	Cstf3	99	97.599	ENSTGUG00000005010	CSTF3	100	97.599	Taeniopygia_guttata
ENSMUSG00000027176	Cstf3	100	89.972	ENSTRUG00000004959	cstf3	100	89.972	Takifugu_rubripes
ENSMUSG00000027176	Cstf3	99	90.563	ENSTNIG00000013811	cstf3	99	90.563	Tetraodon_nigroviridis
ENSMUSG00000027176	Cstf3	90	95.950	ENSTBEG00000001544	CSTF3	90	95.950	Tupaia_belangeri
ENSMUSG00000027176	Cstf3	100	96.234	ENSTTRG00000016366	CSTF3	100	96.234	Tursiops_truncatus
ENSMUSG00000027176	Cstf3	99	99.295	ENSUMAG00000018971	CSTF3	100	99.200	Ursus_maritimus
ENSMUSG00000027176	Cstf3	100	99.163	ENSVPAG00000007800	CSTF3	100	99.163	Vicugna_pacos
ENSMUSG00000027176	Cstf3	99	99.577	ENSVVUG00000014938	CSTF3	100	99.520	Vulpes_vulpes
ENSMUSG00000027176	Cstf3	88	79.062	ENSXETG00000021399	cstf3	100	80.259	Xenopus_tropicalis
ENSMUSG00000027176	Cstf3	66	43.595	ENSXETG00000017946	-	99	43.595	Xenopus_tropicalis
ENSMUSG00000027176	Cstf3	87	90.240	ENSXCOG00000011741	cstf3	100	90.240	Xiphophorus_couchianus
ENSMUSG00000027176	Cstf3	100	90.669	ENSXMAG00000009545	cstf3	100	90.669	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0031123	RNA 3'-end processing	21873635.	IBA	Process