EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000027233 (Gene tree)
Gene ID: 67578
Gene Symbol: Patl2
Alias: 4930424G05Rik|Pat1a
Full Name: protein associated with topoisomerase II homolog 2 (yeast)
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 66082 bases
Position: chr2:122120108-122186189
Accession: 1914828
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000028665	PAT1	PF09770.9	2.5e-10	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000028665	-	2434	XM_006500086	ENSMUSP00000028665	529 (aa)	XP_006500149	A2ARM1

Gene Model

Click here to download ENSMUSG00000027233's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000027233's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000027233	Patl2	98	67.283	ENSG00000229474	PATL2	93	79.091	Homo_sapiens
ENSMUSG00000027233	Patl2	75	43.735	ENSAPOG00000022988	patl2	59	43.614	Acanthochromis_polyacanthus
ENSMUSG00000027233	Patl2	88	72.211	ENSAMEG00000014997	PATL2	91	71.458	Ailuropoda_melanoleuca
ENSMUSG00000027233	Patl2	75	43.735	ENSAOCG00000023738	patl2	52	43.614	Amphiprion_ocellaris
ENSMUSG00000027233	Patl2	75	44.089	ENSAPEG00000011299	patl2	62	43.961	Amphiprion_percula
ENSMUSG00000027233	Patl2	75	41.687	ENSATEG00000019567	patl2	61	41.748	Anabas_testudineus
ENSMUSG00000027233	Patl2	77	50.608	ENSAPLG00000003980	PATL2	66	50.608	Anas_platyrhynchos
ENSMUSG00000027233	Patl2	53	37.966	ENSAPLG00000013394	PATL1	60	37.966	Anas_platyrhynchos
ENSMUSG00000027233	Patl2	62	51.335	ENSACAG00000006951	-	97	48.626	Anolis_carolinensis
ENSMUSG00000027233	Patl2	98	66.481	ENSANAG00000022701	PATL2	96	66.667	Aotus_nancymaae
ENSMUSG00000027233	Patl2	78	42.956	ENSACLG00000010326	patl2	57	43.084	Astatotilapia_calliptera
ENSMUSG00000027233	Patl2	77	45.477	ENSAMXG00000020293	patl2	58	43.365	Astyanax_mexicanus
ENSMUSG00000027233	Patl2	62	76.061	ENSBTAG00000001558	PATL2	92	76.061	Bos_taurus
ENSMUSG00000027233	Patl2	98	66.481	ENSCJAG00000002379	PATL2	96	66.852	Callithrix_jacchus
ENSMUSG00000027233	Patl2	97	68.797	ENSCAFG00000013629	PATL2	96	68.985	Canis_familiaris
ENSMUSG00000027233	Patl2	96	68.939	ENSCAFG00020022169	PATL2	94	69.129	Canis_lupus_dingo
ENSMUSG00000027233	Patl2	97	65.192	ENSCHIG00000026665	PATL2	94	65.192	Capra_hircus
ENSMUSG00000027233	Patl2	98	65.492	ENSTSYG00000032456	PATL2	96	65.863	Carlito_syrichta
ENSMUSG00000027233	Patl2	98	65.913	ENSCPOG00000002922	PATL2	100	65.913	Cavia_porcellus
ENSMUSG00000027233	Patl2	98	66.791	ENSCCAG00000025261	PATL2	96	67.537	Cebus_capucinus
ENSMUSG00000027233	Patl2	98	67.222	ENSCATG00000034794	PATL2	93	79.394	Cercocebus_atys
ENSMUSG00000027233	Patl2	98	68.391	ENSCLAG00000014407	PATL2	99	67.110	Chinchilla_lanigera
ENSMUSG00000027233	Patl2	71	36.317	ENSCSAG00000006095	PATL1	50	37.752	Chlorocebus_sabaeus
ENSMUSG00000027233	Patl2	87	71.822	ENSCSAG00000009601	PATL2	96	68.173	Chlorocebus_sabaeus
ENSMUSG00000027233	Patl2	71	36.061	ENSCHOG00000001611	PATL1	55	37.464	Choloepus_hoffmanni
ENSMUSG00000027233	Patl2	77	52.899	ENSCPBG00000006150	PATL2	61	53.382	Chrysemys_picta_bellii
ENSMUSG00000027233	Patl2	53	31.879	ENSCSAVG00000002430	-	77	31.879	Ciona_savignyi
ENSMUSG00000027233	Patl2	98	67.658	ENSCANG00000013856	PATL2	96	68.401	Colobus_angolensis_palliatus
ENSMUSG00000027233	Patl2	98	78.161	ENSCGRG00001010801	Patl2	100	79.119	Cricetulus_griseus_chok1gshd
ENSMUSG00000027233	Patl2	98	78.161	ENSCGRG00000013007	Patl2	100	79.119	Cricetulus_griseus_crigri
ENSMUSG00000027233	Patl2	77	43.990	ENSCSEG00000009438	patl2	58	43.645	Cynoglossus_semilaevis
ENSMUSG00000027233	Patl2	75	37.838	ENSCVAG00000016203	patl2	61	37.019	Cyprinodon_variegatus
ENSMUSG00000027233	Patl2	77	43.855	ENSDARG00000089567	patl2	58	43.972	Danio_rerio
ENSMUSG00000027233	Patl2	71	36.061	ENSDNOG00000038865	PATL1	63	37.464	Dasypus_novemcinctus
ENSMUSG00000027233	Patl2	98	65.693	ENSDNOG00000036837	PATL2	91	66.971	Dasypus_novemcinctus
ENSMUSG00000027233	Patl2	97	66.279	ENSDORG00000026649	Patl2	99	66.085	Dipodomys_ordii
ENSMUSG00000027233	Patl2	62	72.424	ENSETEG00000005068	PATL2	93	73.636	Echinops_telfairi
ENSMUSG00000027233	Patl2	97	66.479	ENSEASG00005017984	PATL2	95	66.292	Equus_asinus_asinus
ENSMUSG00000027233	Patl2	97	69.981	ENSECAG00000013462	PATL2	95	69.981	Equus_caballus
ENSMUSG00000027233	Patl2	74	45.844	ENSELUG00000023244	patl2	54	44.938	Esox_lucius
ENSMUSG00000027233	Patl2	98	68.362	ENSFCAG00000027170	PATL2	95	68.173	Felis_catus
ENSMUSG00000027233	Patl2	79	50.350	ENSFALG00000009768	PATL2	57	52.184	Ficedula_albicollis
ENSMUSG00000027233	Patl2	98	65.709	ENSFDAG00000012242	PATL2	100	66.092	Fukomys_damarensis
ENSMUSG00000027233	Patl2	55	40.476	ENSFHEG00000009727	patl2	57	40.678	Fundulus_heteroclitus
ENSMUSG00000027233	Patl2	78	42.056	ENSGMOG00000005666	patl2	99	42.657	Gadus_morhua
ENSMUSG00000027233	Patl2	77	51.951	ENSGALG00000002167	PATL2	51	51.951	Gallus_gallus
ENSMUSG00000027233	Patl2	75	44.282	ENSGAFG00000019344	patl2	57	44.048	Gambusia_affinis
ENSMUSG00000027233	Patl2	71	36.387	ENSGAGG00000004461	PATL1	50	37.176	Gopherus_agassizii
ENSMUSG00000027233	Patl2	98	66.852	ENSGGOG00000025923	PATL2	96	67.407	Gorilla_gorilla
ENSMUSG00000027233	Patl2	78	43.357	ENSHBUG00000005929	patl2	65	43.478	Haplochromis_burtoni
ENSMUSG00000027233	Patl2	98	65.784	ENSHGLG00000017415	-	100	65.291	Heterocephalus_glaber_female
ENSMUSG00000027233	Patl2	98	66.352	ENSHGLG00100008419	-	100	65.854	Heterocephalus_glaber_male
ENSMUSG00000027233	Patl2	75	43.066	ENSHCOG00000016754	patl2	55	43.198	Hippocampus_comes
ENSMUSG00000027233	Patl2	78	43.128	ENSIPUG00000020692	patl2	59	41.981	Ictalurus_punctatus
ENSMUSG00000027233	Patl2	98	68.266	ENSSTOG00000033848	PATL2	96	68.266	Ictidomys_tridecemlineatus
ENSMUSG00000027233	Patl2	78	41.629	ENSKMAG00000021275	patl2	59	41.333	Kryptolebias_marmoratus
ENSMUSG00000027233	Patl2	78	41.839	ENSLBEG00000022344	patl2	57	41.761	Labrus_bergylta
ENSMUSG00000027233	Patl2	77	43.365	ENSLACG00000005291	-	53	43.365	Latimeria_chalumnae
ENSMUSG00000027233	Patl2	100	66.914	ENSLAFG00000031124	PATL2	100	67.100	Loxodonta_africana
ENSMUSG00000027233	Patl2	98	67.161	ENSMFAG00000003565	PATL2	96	68.089	Macaca_fascicularis
ENSMUSG00000027233	Patl2	62	79.091	ENSMMUG00000014294	PATL2	93	79.091	Macaca_mulatta
ENSMUSG00000027233	Patl2	98	67.407	ENSMNEG00000034510	PATL2	96	68.148	Macaca_nemestrina
ENSMUSG00000027233	Patl2	98	67.963	ENSMLEG00000042248	PATL2	96	67.778	Mandrillus_leucophaeus
ENSMUSG00000027233	Patl2	75	42.105	ENSMAMG00000013327	patl2	61	41.667	Mastacembelus_armatus
ENSMUSG00000027233	Patl2	78	42.956	ENSMZEG00005014292	patl2	57	43.084	Maylandia_zebra
ENSMUSG00000027233	Patl2	77	50.123	ENSMGAG00000001309	PATL2	65	51.106	Meleagris_gallopavo
ENSMUSG00000027233	Patl2	98	77.969	ENSMAUG00000001008	Patl2	96	78.736	Mesocricetus_auratus
ENSMUSG00000027233	Patl2	62	78.182	ENSMICG00000005037	PATL2	93	78.182	Microcebus_murinus
ENSMUSG00000027233	Patl2	98	79.846	ENSMOCG00000015367	Patl2	98	79.271	Microtus_ochrogaster
ENSMUSG00000027233	Patl2	61	42.508	ENSMMOG00000001299	patl2	60	37.990	Mola_mola
ENSMUSG00000027233	Patl2	87	65.053	ENSMODG00000017690	PATL2	85	63.860	Monodelphis_domestica
ENSMUSG00000027233	Patl2	74	42.750	ENSMALG00000008131	patl2	52	42.686	Monopterus_albus
ENSMUSG00000027233	Patl2	64	37.752	ENSMALG00000018706	patl1	50	37.752	Monopterus_albus
ENSMUSG00000027233	Patl2	98	96.743	MGP_CAROLIEiJ_G0024205	Patl2	98	96.743	Mus_caroli
ENSMUSG00000027233	Patl2	98	94.808	MGP_PahariEiJ_G0025648	Patl2	98	94.808	Mus_pahari
ENSMUSG00000027233	Patl2	98	98.081	MGP_SPRETEiJ_G0025122	Patl2	98	98.081	Mus_spretus
ENSMUSG00000027233	Patl2	97	68.208	ENSNGAG00000020368	Patl2	99	65.138	Nannospalax_galili
ENSMUSG00000027233	Patl2	78	42.890	ENSNBRG00000011745	patl2	62	43.021	Neolamprologus_brichardi
ENSMUSG00000027233	Patl2	98	68.284	ENSNLEG00000005673	PATL2	96	68.097	Nomascus_leucogenys
ENSMUSG00000027233	Patl2	63	37.752	ENSOPRG00000007963	PATL1	53	37.752	Ochotona_princeps
ENSMUSG00000027233	Patl2	78	42.857	ENSONIG00000011519	patl2	57	42.986	Oreochromis_niloticus
ENSMUSG00000027233	Patl2	63	37.572	ENSOANG00000011117	-	86	37.784	Ornithorhynchus_anatinus
ENSMUSG00000027233	Patl2	84	58.575	ENSOANG00000001538	-	100	58.352	Ornithorhynchus_anatinus
ENSMUSG00000027233	Patl2	100	67.420	ENSOCUG00000006339	PATL2	100	67.416	Oryctolagus_cuniculus
ENSMUSG00000027233	Patl2	86	39.669	ENSORLG00000005780	patl2	55	42.280	Oryzias_latipes
ENSMUSG00000027233	Patl2	86	40.289	ENSORLG00020016506	patl2	57	41.798	Oryzias_latipes_hni
ENSMUSG00000027233	Patl2	86	39.669	ENSORLG00015014500	patl2	55	42.280	Oryzias_latipes_hsok
ENSMUSG00000027233	Patl2	71	42.526	ENSOMEG00000021628	patl2	59	41.935	Oryzias_melastigma
ENSMUSG00000027233	Patl2	95	66.538	ENSOGAG00000004709	PATL2	95	66.792	Otolemur_garnettii
ENSMUSG00000027233	Patl2	100	64.706	ENSOARG00000003762	PATL2	100	64.706	Ovis_aries
ENSMUSG00000027233	Patl2	88	71.789	ENSPPAG00000007221	PATL2	96	67.403	Pan_paniscus
ENSMUSG00000027233	Patl2	98	67.917	ENSPPRG00000004279	PATL2	96	67.730	Panthera_pardus
ENSMUSG00000027233	Patl2	98	68.045	ENSPTIG00000018964	PATL2	96	67.857	Panthera_tigris_altaica
ENSMUSG00000027233	Patl2	88	72.000	ENSPTRG00000041536	PATL2	96	67.587	Pan_troglodytes
ENSMUSG00000027233	Patl2	98	67.161	ENSPANG00000018026	PATL2	96	67.904	Papio_anubis
ENSMUSG00000027233	Patl2	71	43.333	ENSPKIG00000016887	patl2	59	41.463	Paramormyrops_kingsleyae
ENSMUSG00000027233	Patl2	89	45.528	ENSPSIG00000017690	PATL2	100	50.000	Pelodiscus_sinensis
ENSMUSG00000027233	Patl2	78	39.953	ENSPMGG00000014550	patl2	66	39.443	Periophthalmus_magnuspinnatus
ENSMUSG00000027233	Patl2	99	79.924	ENSPEMG00000016509	Patl2	98	79.924	Peromyscus_maniculatus_bairdii
ENSMUSG00000027233	Patl2	87	63.499	ENSPCIG00000018256	PATL2	90	61.123	Phascolarctos_cinereus
ENSMUSG00000027233	Patl2	75	44.282	ENSPFOG00000007305	patl2	55	44.153	Poecilia_formosa
ENSMUSG00000027233	Patl2	75	44.282	ENSPLAG00000020713	patl2	55	44.153	Poecilia_latipinna
ENSMUSG00000027233	Patl2	75	44.282	ENSPMEG00000018942	patl2	55	44.153	Poecilia_mexicana
ENSMUSG00000027233	Patl2	65	43.175	ENSPREG00000023066	patl2	55	42.778	Poecilia_reticulata
ENSMUSG00000027233	Patl2	98	67.871	ENSPCOG00000000295	PATL2	93	78.788	Propithecus_coquereli
ENSMUSG00000027233	Patl2	78	43.124	ENSPNYG00000017381	patl2	65	43.249	Pundamilia_nyererei
ENSMUSG00000027233	Patl2	77	45.012	ENSPNAG00000002315	patl2	58	43.571	Pygocentrus_nattereri
ENSMUSG00000027233	Patl2	100	87.170	ENSRNOG00000017061	Patl2	100	86.981	Rattus_norvegicus
ENSMUSG00000027233	Patl2	98	66.852	ENSRBIG00000040369	PATL2	96	67.963	Rhinopithecus_bieti
ENSMUSG00000027233	Patl2	98	67.037	ENSRROG00000028786	PATL2	96	68.148	Rhinopithecus_roxellana
ENSMUSG00000027233	Patl2	98	65.370	ENSSBOG00000034766	PATL2	96	66.481	Saimiri_boliviensis_boliviensis
ENSMUSG00000027233	Patl2	73	44.140	ENSSFOG00015000720	patl2	56	44.153	Scleropages_formosus
ENSMUSG00000027233	Patl2	87	40.084	ENSSMAG00000017262	patl2	73	39.451	Scophthalmus_maximus
ENSMUSG00000027233	Patl2	78	41.801	ENSSDUG00000022927	patl2	58	41.497	Seriola_dumerili
ENSMUSG00000027233	Patl2	75	41.523	ENSSLDG00000017922	patl2	52	44.737	Seriola_lalandi_dorsalis
ENSMUSG00000027233	Patl2	94	65.737	ENSSARG00000009047	PATL2	99	66.260	Sorex_araneus
ENSMUSG00000027233	Patl2	60	55.385	ENSSPUG00000019065	PATL2	94	55.689	Sphenodon_punctatus
ENSMUSG00000027233	Patl2	75	40.640	ENSSPAG00000004784	patl2	61	40.723	Stegastes_partitus
ENSMUSG00000027233	Patl2	71	35.806	ENSSSCG00000013124	PATL1	52	37.176	Sus_scrofa
ENSMUSG00000027233	Patl2	74	52.897	ENSTGUG00000004619	-	100	52.897	Taeniopygia_guttata
ENSMUSG00000027233	Patl2	77	40.230	ENSTRUG00000005647	patl2	56	42.927	Takifugu_rubripes
ENSMUSG00000027233	Patl2	63	37.752	ENSTTRG00000009389	PATL1	53	37.752	Tursiops_truncatus
ENSMUSG00000027233	Patl2	98	68.073	ENSUAMG00000018533	PATL2	96	68.257	Ursus_americanus
ENSMUSG00000027233	Patl2	98	68.073	ENSUMAG00000007738	PATL2	96	68.257	Ursus_maritimus
ENSMUSG00000027233	Patl2	71	35.550	ENSUMAG00000018634	PATL1	50	37.356	Ursus_maritimus
ENSMUSG00000027233	Patl2	71	36.061	ENSVVUG00000016668	PATL1	50	37.464	Vulpes_vulpes
ENSMUSG00000027233	Patl2	96	68.441	ENSVVUG00000011576	PATL2	94	68.774	Vulpes_vulpes
ENSMUSG00000027233	Patl2	72	45.547	ENSXETG00000014167	patl2	67	43.095	Xenopus_tropicalis
ENSMUSG00000027233	Patl2	71	36.020	ENSXCOG00000010808	patl1	64	37.088	Xiphophorus_couchianus
ENSMUSG00000027233	Patl2	75	44.282	ENSXMAG00000018464	patl2	55	44.153	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA	21873635.	IBA	Process
GO:0000932	P-body	21873635.	IBA	Component
GO:0000932	P-body	20826699.	IDA	Component
GO:0000932	P-body	20826699.	ISO	Component
GO:0002151	G-quadruplex RNA binding	20826699.	ISO	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005634	nucleus	20826699.	IDA	Component
GO:0005737	cytoplasm	20826699.	IDA	Component
GO:0005737	cytoplasm	20826699.	ISO	Component
GO:0008266	poly(U) RNA binding	20826699.	ISO	Function
GO:0010607	negative regulation of cytoplasmic mRNA processing body assembly	20826699.	IDA	Process
GO:0010607	negative regulation of cytoplasmic mRNA processing body assembly	20826699.	ISO	Process
GO:0017148	negative regulation of translation	20826699.	ISO	Process
GO:0030371	translation repressor activity	20826699.	ISO	Function
GO:0033962	cytoplasmic mRNA processing body assembly	21873635.	IBA	Process
GO:0034046	poly(G) binding	20826699.	ISO	Function