EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000126984	-	881	-	-	- (aa)	-	-
ENSMUST00000149904	-	538	-	-	- (aa)	-	-
ENSMUST00000028767	-	4664	XM_017319319	ENSMUSP00000028767	715 (aa)	XP_017174808	A2AQ19
ENSMUST00000136321	-	433	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000027304	Rtf1	100	97.622	ENSG00000137815	RTF1	100	97.622	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	19345177.	IMP	Process
GO:0001711	endodermal cell fate commitment	19345177.	IMP	Process
GO:0001832	blastocyst growth	24036311.	IMP	Process
GO:0003677	DNA binding	-	IEA	Function
GO:0003697	single-stranded DNA binding	-	ISO	Function
GO:0005515	protein binding	27749823.	IPI	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005730	nucleolus	9701556.	IDA	Component
GO:0006368	transcription elongation from RNA polymerase II promoter	-	IEA	Process
GO:0016055	Wnt signaling pathway	-	IEA	Process
GO:0016570	histone modification	-	IEA	Process
GO:0016593	Cdc73/Paf1 complex	21873635.	IBA	Component
GO:0016593	Cdc73/Paf1 complex	27749823.	IPI	Component
GO:0016593	Cdc73/Paf1 complex	-	ISO	Component
GO:0019827	stem cell population maintenance	19345177.	IMP	Process
GO:0019827	stem cell population maintenance	-	ISO	Process
GO:0032968	positive regulation of transcription elongation from RNA polymerase II promoter	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0051571	positive regulation of histone H3-K4 methylation	19345177.	IMP	Process
GO:0080182	histone H3-K4 trimethylation	19345177.	IMP	Process
GO:1990269	RNA polymerase II C-terminal domain phosphoserine binding	21873635.	IBA	Function