EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000027387 (Gene tree)
Gene ID: 57432
Gene Symbol: Zc3h8
Alias: E130108N08Rik|Fliz1
Full Name: zinc finger CCCH type containing 8
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 17810 bases
Position: chr2:128926268-128944077
Accession: 1930128
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000028866	zf-CCCH	PF00642.24	1.9e-10	1	2
ENSMUSP00000028866	zf-CCCH	PF00642.24	1.9e-10	2	2
ENSMUSP00000028866	zf-CCCH_2	PF14608.6	3.2e-05	1	3
ENSMUSP00000028866	zf-CCCH_2	PF14608.6	3.2e-05	2	3
ENSMUSP00000028866	zf-CCCH_2	PF14608.6	3.2e-05	3	3

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000028866	-	1624	XM_006499947	ENSMUSP00000028866	305 (aa)	XP_006500010	Q9JJ48

Gene Model

Click here to download ENSMUSG00000027387's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000027387's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000027387	Zc3h8	100	75.738	ENSG00000144161	ZC3H8	100	75.738	Homo_sapiens
ENSMUSG00000027387	Zc3h8	81	78.049	ENSAMEG00000016207	ZC3H8	99	78.049	Ailuropoda_melanoleuca
ENSMUSG00000027387	Zc3h8	100	73.203	ENSANAG00000022151	ZC3H8	100	73.203	Aotus_nancymaae
ENSMUSG00000027387	Zc3h8	99	71.711	ENSBTAG00000015965	ZC3H8	99	71.711	Bos_taurus
ENSMUSG00000027387	Zc3h8	100	72.876	ENSCJAG00000040629	ZC3H8	100	72.876	Callithrix_jacchus
ENSMUSG00000027387	Zc3h8	99	76.645	ENSCAFG00000007155	ZC3H8	77	76.645	Canis_familiaris
ENSMUSG00000027387	Zc3h8	99	76.645	ENSCAFG00020017540	ZC3H8	92	76.645	Canis_lupus_dingo
ENSMUSG00000027387	Zc3h8	99	68.690	ENSCHIG00000012152	ZC3H8	99	68.690	Capra_hircus
ENSMUSG00000027387	Zc3h8	99	78.947	ENSTSYG00000006668	ZC3H8	99	78.947	Carlito_syrichta
ENSMUSG00000027387	Zc3h8	91	71.583	ENSCPOG00000008258	ZC3H8	99	71.583	Cavia_porcellus
ENSMUSG00000027387	Zc3h8	100	70.492	ENSCCAG00000034286	-	100	70.492	Cebus_capucinus
ENSMUSG00000027387	Zc3h8	100	72.549	ENSCCAG00000019771	-	100	72.549	Cebus_capucinus
ENSMUSG00000027387	Zc3h8	100	74.754	ENSCATG00000031295	ZC3H8	100	75.817	Cercocebus_atys
ENSMUSG00000027387	Zc3h8	100	72.403	ENSCLAG00000006848	ZC3H8	100	72.403	Chinchilla_lanigera
ENSMUSG00000027387	Zc3h8	85	73.359	ENSCSAG00000016801	ZC3H8	98	74.615	Chlorocebus_sabaeus
ENSMUSG00000027387	Zc3h8	90	63.406	ENSCHOG00000010391	ZC3H8	98	63.406	Choloepus_hoffmanni
ENSMUSG00000027387	Zc3h8	100	58.333	ENSCANG00000014691	ZC3H8	100	58.333	Colobus_angolensis_palliatus
ENSMUSG00000027387	Zc3h8	100	89.216	ENSCGRG00001018353	Zc3h8	100	89.216	Cricetulus_griseus_chok1gshd
ENSMUSG00000027387	Zc3h8	100	89.216	ENSCGRG00000016191	Zc3h8	100	89.216	Cricetulus_griseus_crigri
ENSMUSG00000027387	Zc3h8	100	73.529	ENSDORG00000029341	Zc3h8	100	73.529	Dipodomys_ordii
ENSMUSG00000027387	Zc3h8	79	72.727	ENSETEG00000016560	ZC3H8	81	72.727	Echinops_telfairi
ENSMUSG00000027387	Zc3h8	99	76.316	ENSEASG00005006490	ZC3H8	99	76.974	Equus_asinus_asinus
ENSMUSG00000027387	Zc3h8	99	75.658	ENSECAG00000022765	ZC3H8	99	76.645	Equus_caballus
ENSMUSG00000027387	Zc3h8	99	68.525	ENSEEUG00000006984	ZC3H8	99	68.525	Erinaceus_europaeus
ENSMUSG00000027387	Zc3h8	99	73.871	ENSFCAG00000008088	ZC3H8	99	74.839	Felis_catus
ENSMUSG00000027387	Zc3h8	100	73.377	ENSFDAG00000001021	ZC3H8	100	73.377	Fukomys_damarensis
ENSMUSG00000027387	Zc3h8	100	74.754	ENSGGOG00000009004	ZC3H8	100	74.754	Gorilla_gorilla
ENSMUSG00000027387	Zc3h8	100	70.927	ENSHGLG00000008367	ZC3H8	100	70.927	Heterocephalus_glaber_female
ENSMUSG00000027387	Zc3h8	55	79.290	ENSHGLG00100017277	-	100	79.290	Heterocephalus_glaber_male
ENSMUSG00000027387	Zc3h8	100	77.451	ENSSTOG00000006347	ZC3H8	100	77.451	Ictidomys_tridecemlineatus
ENSMUSG00000027387	Zc3h8	99	75.000	ENSLAFG00000004675	ZC3H8	99	75.000	Loxodonta_africana
ENSMUSG00000027387	Zc3h8	100	75.082	ENSMFAG00000031522	ZC3H8	100	76.144	Macaca_fascicularis
ENSMUSG00000027387	Zc3h8	100	75.410	ENSMMUG00000044163	ZC3H8	100	76.471	Macaca_mulatta
ENSMUSG00000027387	Zc3h8	100	75.082	ENSMNEG00000034502	ZC3H8	100	76.144	Macaca_nemestrina
ENSMUSG00000027387	Zc3h8	100	74.426	ENSMLEG00000029980	ZC3H8	100	75.490	Mandrillus_leucophaeus
ENSMUSG00000027387	Zc3h8	100	87.908	ENSMAUG00000012509	Zc3h8	100	87.908	Mesocricetus_auratus
ENSMUSG00000027387	Zc3h8	100	78.431	ENSMICG00000045551	ZC3H8	100	79.412	Microcebus_murinus
ENSMUSG00000027387	Zc3h8	100	87.213	ENSMOCG00000015035	Zc3h8	100	87.213	Microtus_ochrogaster
ENSMUSG00000027387	Zc3h8	100	97.705	MGP_CAROLIEiJ_G0024276	Zc3h8	100	97.705	Mus_caroli
ENSMUSG00000027387	Zc3h8	100	97.377	MGP_PahariEiJ_G0025721	Zc3h8	100	97.377	Mus_pahari
ENSMUSG00000027387	Zc3h8	100	99.344	MGP_SPRETEiJ_G0025196	Zc3h8	100	99.344	Mus_spretus
ENSMUSG00000027387	Zc3h8	99	75.806	ENSMPUG00000009562	ZC3H8	99	75.806	Mustela_putorius_furo
ENSMUSG00000027387	Zc3h8	90	69.643	ENSMLUG00000004890	ZC3H8	100	70.213	Myotis_lucifugus
ENSMUSG00000027387	Zc3h8	100	83.987	ENSNGAG00000010427	Zc3h8	100	83.987	Nannospalax_galili
ENSMUSG00000027387	Zc3h8	100	77.049	ENSNLEG00000001619	ZC3H8	100	77.049	Nomascus_leucogenys
ENSMUSG00000027387	Zc3h8	90	69.091	ENSOPRG00000011183	ZC3H8	99	69.091	Ochotona_princeps
ENSMUSG00000027387	Zc3h8	100	72.222	ENSODEG00000006594	ZC3H8	100	72.222	Octodon_degus
ENSMUSG00000027387	Zc3h8	99	74.587	ENSOCUG00000011253	ZC3H8	88	74.587	Oryctolagus_cuniculus
ENSMUSG00000027387	Zc3h8	100	73.718	ENSOGAG00000002554	ZC3H8	100	73.718	Otolemur_garnettii
ENSMUSG00000027387	Zc3h8	99	73.026	ENSOARG00000014475	ZC3H8	99	73.026	Ovis_aries
ENSMUSG00000027387	Zc3h8	100	75.410	ENSPPAG00000028071	ZC3H8	100	75.410	Pan_paniscus
ENSMUSG00000027387	Zc3h8	99	74.194	ENSPPRG00000005648	ZC3H8	99	75.161	Panthera_pardus
ENSMUSG00000027387	Zc3h8	99	74.194	ENSPTIG00000016697	ZC3H8	99	75.161	Panthera_tigris_altaica
ENSMUSG00000027387	Zc3h8	100	75.410	ENSPTRG00000012362	ZC3H8	100	75.410	Pan_troglodytes
ENSMUSG00000027387	Zc3h8	100	74.754	ENSPANG00000016995	ZC3H8	100	75.817	Papio_anubis
ENSMUSG00000027387	Zc3h8	97	85.621	ENSPEMG00000011068	Zc3h8	97	85.621	Peromyscus_maniculatus_bairdii
ENSMUSG00000027387	Zc3h8	99	75.329	ENSPPYG00000012165	ZC3H8	99	75.329	Pongo_abelii
ENSMUSG00000027387	Zc3h8	100	56.863	ENSPCAG00000015426	ZC3H8	100	56.863	Procavia_capensis
ENSMUSG00000027387	Zc3h8	100	80.065	ENSPCOG00000021690	ZC3H8	100	80.065	Propithecus_coquereli
ENSMUSG00000027387	Zc3h8	74	78.107	ENSPVAG00000003510	ZC3H8	76	78.107	Pteropus_vampyrus
ENSMUSG00000027387	Zc3h8	100	90.492	ENSRNOG00000017647	Zc3h8	100	90.492	Rattus_norvegicus
ENSMUSG00000027387	Zc3h8	100	75.817	ENSRBIG00000027345	ZC3H8	100	75.817	Rhinopithecus_bieti
ENSMUSG00000027387	Zc3h8	100	76.144	ENSRROG00000039459	ZC3H8	100	76.144	Rhinopithecus_roxellana
ENSMUSG00000027387	Zc3h8	100	69.872	ENSSBOG00000028167	ZC3H8	100	69.872	Saimiri_boliviensis_boliviensis
ENSMUSG00000027387	Zc3h8	91	67.742	ENSSARG00000012883	ZC3H8	99	67.742	Sorex_araneus
ENSMUSG00000027387	Zc3h8	85	72.519	ENSSSCG00000008099	ZC3H8	97	72.901	Sus_scrofa
ENSMUSG00000027387	Zc3h8	59	80.000	ENSTBEG00000015547	-	68	80.000	Tupaia_belangeri
ENSMUSG00000027387	Zc3h8	85	74.905	ENSTTRG00000013153	ZC3H8	85	74.905	Tursiops_truncatus
ENSMUSG00000027387	Zc3h8	99	76.974	ENSUAMG00000002411	ZC3H8	99	76.974	Ursus_americanus
ENSMUSG00000027387	Zc3h8	99	77.961	ENSUMAG00000008665	ZC3H8	99	77.961	Ursus_maritimus
ENSMUSG00000027387	Zc3h8	100	76.144	ENSVPAG00000005911	ZC3H8	100	77.124	Vicugna_pacos
ENSMUSG00000027387	Zc3h8	99	76.316	ENSVVUG00000028659	ZC3H8	99	76.316	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	12077251.	IDA	Process
GO:0001162	RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0001162	RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding	12077251.	IDA	Function
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	12077251.	IDA	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0003700	DNA-binding transcription factor activity	-	ISO	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	11318609.	IDA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006915	apoptotic process	-	IEA	Process
GO:0008023	transcription elongation factor complex	-	ISO	Component
GO:0015030	Cajal body	-	ISO	Component
GO:0016604	nuclear body	-	ISO	Component
GO:0033085	negative regulation of T cell differentiation in thymus	-	ISO	Process
GO:0035327	transcriptionally active chromatin	-	ISO	Component
GO:0035363	histone locus body	-	ISO	Component
GO:0042795	snRNA transcription by RNA polymerase II	-	ISO	Process
GO:0042796	snRNA transcription by RNA polymerase III	-	ISO	Process
GO:0043029	T cell homeostasis	-	ISO	Process
GO:0043565	sequence-specific DNA binding	12077251.	IDA	Function
GO:0045892	negative regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0045892	negative regulation of transcription, DNA-templated	12077251.	IMP	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0045945	positive regulation of transcription by RNA polymerase III	-	ISO	Process
GO:0046677	response to antibiotic	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0070245	positive regulation of thymocyte apoptotic process	-	ISO	Process