EuRBPDB

Description

Ensembl ID: ENSMUSG00000027422 (Gene tree)
Gene ID: 81910
Gene Symbol: Rrbp1
Alias: 1700087N07Rik|5730465C04Rik|ES/130|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180
Full Name: ribosome binding protein 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 63869
Position: chr2: 143947395-144011263
Accession: 1932395
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000135367	-	516	-	-	- (aa)	-	-
ENSMUST00000132434	-	2896	-	-	- (aa)	-	-
ENSMUST00000016072	-	5177	XM_006500440	ENSMUSP00000016072	1464 (aa)	XP_006500503	A2AVJ7
ENSMUST00000154649	-	1048	-	-	- (aa)	-	-
ENSMUST00000155539	-	569	-	-	- (aa)	-	-
ENSMUST00000136068	-	979	-	-	- (aa)	-	-
ENSMUST00000037875	-	2701	-	ENSMUSP00000040560	701 (aa)	-	Q99PL5
ENSMUST00000140511	-	693	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu04141	Protein processing in endoplasmic reticulum	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000027422	Rrbp1	100	79.348	ENSG00000125844	RRBP1	100	86.818	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005515	protein binding	23055941.	IPI	Function
GO:0005783	endoplasmic reticulum	-	IEA	Component
GO:0015031	protein transport	-	IEA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0030176	integral component of endoplasmic reticulum membrane	21873635.	IBA	Component