EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000027427 (Gene tree)
Gene ID: 70408
Gene Symbol: Polr3f
Alias: 2810411G20Rik|3010019O03Rik|3110032A07Rik|RPC39|RPC6
Full Name: polymerase (RNA) III (DNA directed) polypeptide F
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 14278 bases
Position: chr2:144527718-144541995
Accession: 1924086
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000028914	RNA_pol_Rpc34	PF05158.12	4.8e-105	1	1
ENSMUSP00000105644	RNA_pol_Rpc34	PF05158.12	1.2e-21	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000110017	-	1632	-	ENSMUSP00000105644	141 (aa)	-	Q9CZ23
ENSMUST00000136999	-	2177	-	-	- (aa)	-	-
ENSMUST00000152311	-	490	-	-	- (aa)	-	-
ENSMUST00000134051	-	690	-	-	- (aa)	-	-
ENSMUST00000028914	-	4403	-	ENSMUSP00000028914	316 (aa)	-	Q921X6
ENSMUST00000155567	-	792	-	-	- (aa)	-	-
ENSMUST00000143292	-	835	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000027427's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03020	RNA polymerase	KEGG
mmu04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000027427's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000027427	Polr3f	100	98.734	ENSG00000132664	POLR3F	100	98.734	Homo_sapiens
ENSMUSG00000027427	Polr3f	100	85.127	ENSAPOG00000008271	polr3f	100	85.127	Acanthochromis_polyacanthus
ENSMUSG00000027427	Polr3f	100	98.418	ENSAMEG00000005222	POLR3F	100	98.418	Ailuropoda_melanoleuca
ENSMUSG00000027427	Polr3f	100	79.430	ENSACIG00000006705	polr3f	100	79.430	Amphilophus_citrinellus
ENSMUSG00000027427	Polr3f	100	85.759	ENSAOCG00000000687	polr3f	100	85.759	Amphiprion_ocellaris
ENSMUSG00000027427	Polr3f	100	85.443	ENSAPEG00000015263	polr3f	100	85.443	Amphiprion_percula
ENSMUSG00000027427	Polr3f	87	88.727	ENSATEG00000015539	polr3f	100	88.727	Anabas_testudineus
ENSMUSG00000027427	Polr3f	87	94.545	ENSAPLG00000005533	POLR3F	100	94.545	Anas_platyrhynchos
ENSMUSG00000027427	Polr3f	96	91.749	ENSACAG00000014293	POLR3F	98	91.749	Anolis_carolinensis
ENSMUSG00000027427	Polr3f	100	98.418	ENSANAG00000026726	POLR3F	100	98.418	Aotus_nancymaae
ENSMUSG00000027427	Polr3f	100	85.759	ENSACLG00000003615	polr3f	100	85.759	Astatotilapia_calliptera
ENSMUSG00000027427	Polr3f	100	86.392	ENSAMXG00000036020	polr3f	100	86.392	Astyanax_mexicanus
ENSMUSG00000027427	Polr3f	100	98.101	ENSBTAG00000008825	POLR3F	100	98.101	Bos_taurus
ENSMUSG00000027427	Polr3f	94	33.779	WBGene00021112	W09C3.4	95	33.779	Caenorhabditis_elegans
ENSMUSG00000027427	Polr3f	100	98.418	ENSCJAG00000005159	POLR3F	100	98.418	Callithrix_jacchus
ENSMUSG00000027427	Polr3f	100	98.101	ENSCAFG00000005420	POLR3F	100	98.101	Canis_familiaris
ENSMUSG00000027427	Polr3f	100	98.101	ENSCAFG00020027500	POLR3F	100	98.101	Canis_lupus_dingo
ENSMUSG00000027427	Polr3f	100	98.101	ENSCHIG00000014743	POLR3F	100	98.101	Capra_hircus
ENSMUSG00000027427	Polr3f	100	97.785	ENSTSYG00000004207	POLR3F	100	97.785	Carlito_syrichta
ENSMUSG00000027427	Polr3f	93	55.068	ENSCAPG00000008423	POLR3F	100	55.068	Cavia_aperea
ENSMUSG00000027427	Polr3f	100	97.785	ENSCPOG00000002400	POLR3F	100	97.785	Cavia_porcellus
ENSMUSG00000027427	Polr3f	100	87.658	ENSCCAG00000021800	POLR3F	100	87.658	Cebus_capucinus
ENSMUSG00000027427	Polr3f	100	98.418	ENSCATG00000019507	POLR3F	100	98.418	Cercocebus_atys
ENSMUSG00000027427	Polr3f	100	97.785	ENSCLAG00000016296	POLR3F	100	97.785	Chinchilla_lanigera
ENSMUSG00000027427	Polr3f	100	98.418	ENSCSAG00000011513	POLR3F	100	98.418	Chlorocebus_sabaeus
ENSMUSG00000027427	Polr3f	74	98.095	ENSCHOG00000013268	POLR3F	73	98.601	Choloepus_hoffmanni
ENSMUSG00000027427	Polr3f	87	93.091	ENSCPBG00000023473	POLR3F	100	93.091	Chrysemys_picta_bellii
ENSMUSG00000027427	Polr3f	99	60.635	ENSCING00000001212	-	99	60.635	Ciona_intestinalis
ENSMUSG00000027427	Polr3f	70	59.193	ENSCSAVG00000003340	-	96	65.680	Ciona_savignyi
ENSMUSG00000027427	Polr3f	92	98.625	ENSCANG00000037390	POLR3F	100	98.625	Colobus_angolensis_palliatus
ENSMUSG00000027427	Polr3f	100	98.101	ENSCGRG00001002032	Polr3f	100	98.101	Cricetulus_griseus_chok1gshd
ENSMUSG00000027427	Polr3f	100	98.101	ENSCGRG00000010852	Polr3f	100	98.101	Cricetulus_griseus_crigri
ENSMUSG00000027427	Polr3f	100	83.544	ENSCSEG00000001247	polr3f	100	83.544	Cynoglossus_semilaevis
ENSMUSG00000027427	Polr3f	100	85.443	ENSCVAG00000007611	polr3f	100	85.443	Cyprinodon_variegatus
ENSMUSG00000027427	Polr3f	100	87.342	ENSDARG00000012572	polr3f	100	87.342	Danio_rerio
ENSMUSG00000027427	Polr3f	100	95.886	ENSDNOG00000010719	POLR3F	100	95.886	Dasypus_novemcinctus
ENSMUSG00000027427	Polr3f	100	98.734	ENSDORG00000016352	Polr3f	100	98.734	Dipodomys_ordii
ENSMUSG00000027427	Polr3f	95	49.667	FBgn0038951	CG5380	99	49.667	Drosophila_melanogaster
ENSMUSG00000027427	Polr3f	89	60.142	ENSETEG00000015485	-	100	60.142	Echinops_telfairi
ENSMUSG00000027427	Polr3f	96	77.228	ENSEBUG00000006783	polr3f	97	77.228	Eptatretus_burgeri
ENSMUSG00000027427	Polr3f	100	98.734	ENSEASG00005002022	POLR3F	100	98.734	Equus_asinus_asinus
ENSMUSG00000027427	Polr3f	100	98.734	ENSECAG00000009920	POLR3F	100	98.734	Equus_caballus
ENSMUSG00000027427	Polr3f	74	97.143	ENSEEUG00000000184	POLR3F	80	88.000	Erinaceus_europaeus
ENSMUSG00000027427	Polr3f	100	87.975	ENSELUG00000001558	polr3f	100	87.975	Esox_lucius
ENSMUSG00000027427	Polr3f	100	98.418	ENSFCAG00000013828	POLR3F	100	98.418	Felis_catus
ENSMUSG00000027427	Polr3f	87	94.182	ENSFALG00000007623	POLR3F	100	94.182	Ficedula_albicollis
ENSMUSG00000027427	Polr3f	100	97.468	ENSFDAG00000002528	POLR3F	100	97.468	Fukomys_damarensis
ENSMUSG00000027427	Polr3f	100	82.911	ENSFHEG00000006450	polr3f	100	82.911	Fundulus_heteroclitus
ENSMUSG00000027427	Polr3f	100	92.722	ENSGALG00000008749	POLR3F	100	92.722	Gallus_gallus
ENSMUSG00000027427	Polr3f	100	84.494	ENSGAFG00000003698	polr3f	100	84.494	Gambusia_affinis
ENSMUSG00000027427	Polr3f	100	92.089	ENSGAGG00000006151	POLR3F	100	92.089	Gopherus_agassizii
ENSMUSG00000027427	Polr3f	100	98.734	ENSGGOG00000011543	POLR3F	100	98.734	Gorilla_gorilla
ENSMUSG00000027427	Polr3f	100	86.076	ENSHBUG00000013806	polr3f	100	86.076	Haplochromis_burtoni
ENSMUSG00000027427	Polr3f	100	97.785	ENSHGLG00000011867	POLR3F	100	97.785	Heterocephalus_glaber_female
ENSMUSG00000027427	Polr3f	100	97.785	ENSHGLG00100012577	POLR3F	100	97.785	Heterocephalus_glaber_male
ENSMUSG00000027427	Polr3f	100	76.582	ENSHCOG00000011751	polr3f	100	76.582	Hippocampus_comes
ENSMUSG00000027427	Polr3f	98	86.495	ENSIPUG00000013347	polr3f	99	86.495	Ictalurus_punctatus
ENSMUSG00000027427	Polr3f	100	98.418	ENSSTOG00000013588	POLR3F	100	98.418	Ictidomys_tridecemlineatus
ENSMUSG00000027427	Polr3f	100	98.418	ENSJJAG00000017513	Polr3f	100	98.418	Jaculus_jaculus
ENSMUSG00000027427	Polr3f	87	81.091	ENSKMAG00000016495	polr3f	100	81.091	Kryptolebias_marmoratus
ENSMUSG00000027427	Polr3f	73	92.241	ENSLBEG00000011998	polr3f	100	92.241	Labrus_bergylta
ENSMUSG00000027427	Polr3f	100	89.241	ENSLACG00000009371	POLR3F	100	89.241	Latimeria_chalumnae
ENSMUSG00000027427	Polr3f	100	88.924	ENSLOCG00000015701	polr3f	100	88.924	Lepisosteus_oculatus
ENSMUSG00000027427	Polr3f	100	97.785	ENSLAFG00000004929	POLR3F	100	97.785	Loxodonta_africana
ENSMUSG00000027427	Polr3f	100	98.418	ENSMFAG00000002227	POLR3F	100	98.418	Macaca_fascicularis
ENSMUSG00000027427	Polr3f	87	98.182	ENSMMUG00000004143	POLR3F	100	98.182	Macaca_mulatta
ENSMUSG00000027427	Polr3f	100	98.418	ENSMNEG00000033404	POLR3F	100	98.418	Macaca_nemestrina
ENSMUSG00000027427	Polr3f	100	98.418	ENSMLEG00000021905	POLR3F	100	98.418	Mandrillus_leucophaeus
ENSMUSG00000027427	Polr3f	100	85.127	ENSMAMG00000017975	polr3f	100	85.127	Mastacembelus_armatus
ENSMUSG00000027427	Polr3f	100	86.076	ENSMZEG00005015134	polr3f	100	86.076	Maylandia_zebra
ENSMUSG00000027427	Polr3f	100	92.405	ENSMGAG00000006691	POLR3F	100	92.405	Meleagris_gallopavo
ENSMUSG00000027427	Polr3f	100	98.418	ENSMAUG00000020176	Polr3f	100	98.418	Mesocricetus_auratus
ENSMUSG00000027427	Polr3f	100	99.051	ENSMICG00000044519	POLR3F	100	99.051	Microcebus_murinus
ENSMUSG00000027427	Polr3f	100	98.101	ENSMOCG00000018352	Polr3f	100	98.101	Microtus_ochrogaster
ENSMUSG00000027427	Polr3f	93	86.869	ENSMMOG00000018477	polr3f	100	86.869	Mola_mola
ENSMUSG00000027427	Polr3f	100	96.835	ENSMODG00000005624	POLR3F	100	96.835	Monodelphis_domestica
ENSMUSG00000027427	Polr3f	100	86.076	ENSMALG00000006685	polr3f	100	86.076	Monopterus_albus
ENSMUSG00000027427	Polr3f	100	100.000	MGP_CAROLIEiJ_G0024385	Polr3f	100	100.000	Mus_caroli
ENSMUSG00000027427	Polr3f	100	100.000	MGP_PahariEiJ_G0025829	Polr3f	100	100.000	Mus_pahari
ENSMUSG00000027427	Polr3f	100	100.000	MGP_SPRETEiJ_G0025304	Polr3f	100	100.000	Mus_spretus
ENSMUSG00000027427	Polr3f	100	76.615	ENSMPUG00000001252	-	100	76.615	Mustela_putorius_furo
ENSMUSG00000027427	Polr3f	100	98.101	ENSMLUG00000014844	POLR3F	100	98.101	Myotis_lucifugus
ENSMUSG00000027427	Polr3f	100	97.785	ENSNGAG00000010898	Polr3f	100	97.785	Nannospalax_galili
ENSMUSG00000027427	Polr3f	100	86.392	ENSNBRG00000020796	polr3f	100	86.392	Neolamprologus_brichardi
ENSMUSG00000027427	Polr3f	100	98.734	ENSNLEG00000009778	POLR3F	100	98.734	Nomascus_leucogenys
ENSMUSG00000027427	Polr3f	93	90.508	ENSMEUG00000010320	POLR3F	100	90.508	Notamacropus_eugenii
ENSMUSG00000027427	Polr3f	100	95.570	ENSOPRG00000003385	POLR3F	100	95.570	Ochotona_princeps
ENSMUSG00000027427	Polr3f	100	97.468	ENSODEG00000011521	POLR3F	100	97.468	Octodon_degus
ENSMUSG00000027427	Polr3f	100	84.810	ENSONIG00000006858	polr3f	100	84.810	Oreochromis_niloticus
ENSMUSG00000027427	Polr3f	100	95.570	ENSOANG00000001253	POLR3F	100	95.570	Ornithorhynchus_anatinus
ENSMUSG00000027427	Polr3f	100	98.101	ENSOCUG00000015067	POLR3F	100	98.101	Oryctolagus_cuniculus
ENSMUSG00000027427	Polr3f	100	84.494	ENSORLG00000022412	polr3f	100	84.494	Oryzias_latipes
ENSMUSG00000027427	Polr3f	100	84.494	ENSORLG00020021944	polr3f	100	84.494	Oryzias_latipes_hni
ENSMUSG00000027427	Polr3f	91	58.915	ENSOMEG00000008655	polr3f	77	58.915	Oryzias_melastigma
ENSMUSG00000027427	Polr3f	100	97.468	ENSOGAG00000002916	POLR3F	100	97.468	Otolemur_garnettii
ENSMUSG00000027427	Polr3f	100	98.101	ENSOARG00000000315	-	100	98.101	Ovis_aries
ENSMUSG00000027427	Polr3f	100	61.709	ENSOARG00000008647	-	100	61.709	Ovis_aries
ENSMUSG00000027427	Polr3f	100	98.734	ENSPPAG00000036681	POLR3F	100	98.734	Pan_paniscus
ENSMUSG00000027427	Polr3f	100	98.418	ENSPPRG00000024604	POLR3F	100	98.418	Panthera_pardus
ENSMUSG00000027427	Polr3f	100	98.418	ENSPTIG00000020292	POLR3F	100	98.418	Panthera_tigris_altaica
ENSMUSG00000027427	Polr3f	100	98.734	ENSPTRG00000013287	POLR3F	100	98.734	Pan_troglodytes
ENSMUSG00000027427	Polr3f	100	98.418	ENSPANG00000025015	POLR3F	100	98.418	Papio_anubis
ENSMUSG00000027427	Polr3f	100	87.975	ENSPKIG00000004427	polr3f	100	87.975	Paramormyrops_kingsleyae
ENSMUSG00000027427	Polr3f	87	94.182	ENSPSIG00000016613	POLR3F	100	94.182	Pelodiscus_sinensis
ENSMUSG00000027427	Polr3f	100	53.918	ENSPMGG00000018350	polr3f	100	56.013	Periophthalmus_magnuspinnatus
ENSMUSG00000027427	Polr3f	100	98.418	ENSPEMG00000006966	Polr3f	100	98.418	Peromyscus_maniculatus_bairdii
ENSMUSG00000027427	Polr3f	100	79.747	ENSPMAG00000005530	polr3f	100	79.747	Petromyzon_marinus
ENSMUSG00000027427	Polr3f	100	97.152	ENSPCIG00000000908	POLR3F	85	97.152	Phascolarctos_cinereus
ENSMUSG00000027427	Polr3f	100	84.494	ENSPFOG00000018334	polr3f	100	84.494	Poecilia_formosa
ENSMUSG00000027427	Polr3f	100	84.494	ENSPLAG00000021803	polr3f	100	84.494	Poecilia_latipinna
ENSMUSG00000027427	Polr3f	100	84.494	ENSPMEG00000013150	polr3f	100	84.494	Poecilia_mexicana
ENSMUSG00000027427	Polr3f	100	84.494	ENSPREG00000005278	polr3f	100	84.494	Poecilia_reticulata
ENSMUSG00000027427	Polr3f	100	98.734	ENSPPYG00000010737	POLR3F	100	98.734	Pongo_abelii
ENSMUSG00000027427	Polr3f	66	98.333	ENSPCAG00000004893	POLR3F	71	98.333	Procavia_capensis
ENSMUSG00000027427	Polr3f	86	88.000	ENSPCOG00000015427	-	99	88.000	Propithecus_coquereli
ENSMUSG00000027427	Polr3f	100	99.051	ENSPCOG00000004543	POLR3F	100	99.051	Propithecus_coquereli
ENSMUSG00000027427	Polr3f	100	98.101	ENSPVAG00000000403	POLR3F	100	98.101	Pteropus_vampyrus
ENSMUSG00000027427	Polr3f	100	86.076	ENSPNYG00000016276	polr3f	100	86.076	Pundamilia_nyererei
ENSMUSG00000027427	Polr3f	100	87.025	ENSPNAG00000005164	polr3f	100	87.025	Pygocentrus_nattereri
ENSMUSG00000027427	Polr3f	100	99.051	ENSRNOG00000007548	Polr3f	85	99.051	Rattus_norvegicus
ENSMUSG00000027427	Polr3f	100	98.418	ENSRBIG00000021268	POLR3F	100	98.418	Rhinopithecus_bieti
ENSMUSG00000027427	Polr3f	100	98.418	ENSRROG00000039911	POLR3F	100	98.418	Rhinopithecus_roxellana
ENSMUSG00000027427	Polr3f	100	98.418	ENSSBOG00000018207	POLR3F	100	98.418	Saimiri_boliviensis_boliviensis
ENSMUSG00000027427	Polr3f	100	76.341	ENSSHAG00000018160	POLR3F	100	75.394	Sarcophilus_harrisii
ENSMUSG00000027427	Polr3f	100	88.291	ENSSFOG00015022433	polr3f	100	88.291	Scleropages_formosus
ENSMUSG00000027427	Polr3f	100	84.494	ENSSMAG00000021029	polr3f	100	84.494	Scophthalmus_maximus
ENSMUSG00000027427	Polr3f	100	76.266	ENSSDUG00000022435	polr3f	100	76.266	Seriola_dumerili
ENSMUSG00000027427	Polr3f	100	85.759	ENSSLDG00000012761	polr3f	100	85.759	Seriola_lalandi_dorsalis
ENSMUSG00000027427	Polr3f	100	88.291	ENSSARG00000006039	POLR3F	100	88.291	Sorex_araneus
ENSMUSG00000027427	Polr3f	100	93.038	ENSSPUG00000001873	POLR3F	100	93.038	Sphenodon_punctatus
ENSMUSG00000027427	Polr3f	100	78.165	ENSSPAG00000002092	polr3f	100	78.165	Stegastes_partitus
ENSMUSG00000027427	Polr3f	100	98.418	ENSSSCG00000007095	POLR3F	100	98.418	Sus_scrofa
ENSMUSG00000027427	Polr3f	100	92.089	ENSTGUG00000005839	POLR3F	100	92.089	Taeniopygia_guttata
ENSMUSG00000027427	Polr3f	100	83.861	ENSTRUG00000012101	polr3f	100	83.861	Takifugu_rubripes
ENSMUSG00000027427	Polr3f	100	83.228	ENSTNIG00000006456	polr3f	100	83.228	Tetraodon_nigroviridis
ENSMUSG00000027427	Polr3f	84	63.866	ENSTNIG00000002288	-	98	63.866	Tetraodon_nigroviridis
ENSMUSG00000027427	Polr3f	100	81.962	ENSTBEG00000007921	POLR3F	100	81.962	Tupaia_belangeri
ENSMUSG00000027427	Polr3f	100	98.101	ENSTTRG00000002580	POLR3F	100	98.101	Tursiops_truncatus
ENSMUSG00000027427	Polr3f	53	96.386	ENSUAMG00000024166	POLR3F	100	96.386	Ursus_americanus
ENSMUSG00000027427	Polr3f	59	100.000	ENSUAMG00000025586	-	100	100.000	Ursus_americanus
ENSMUSG00000027427	Polr3f	100	98.101	ENSUMAG00000024944	POLR3F	100	98.101	Ursus_maritimus
ENSMUSG00000027427	Polr3f	100	97.468	ENSVPAG00000009063	POLR3F	100	97.468	Vicugna_pacos
ENSMUSG00000027427	Polr3f	100	98.101	ENSVVUG00000012925	POLR3F	100	98.101	Vulpes_vulpes
ENSMUSG00000027427	Polr3f	100	88.291	ENSXETG00000024898	polr3f	100	88.291	Xenopus_tropicalis
ENSMUSG00000027427	Polr3f	87	86.909	ENSXCOG00000010301	polr3f	100	86.909	Xiphophorus_couchianus
ENSMUSG00000027427	Polr3f	100	84.810	ENSXMAG00000004604	polr3f	100	84.810	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001056	RNA polymerase III activity	21873635.	IBA	Function
GO:0002376	immune system process	-	IEA	Process
GO:0003690	double-stranded DNA binding	-	ISO	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005666	RNA polymerase III complex	21873635.	IBA	Component
GO:0005666	RNA polymerase III complex	-	ISO	Component
GO:0006383	transcription by RNA polymerase III	-	IEA	Process
GO:0032728	positive regulation of interferon-beta production	-	ISO	Process
GO:0045087	innate immune response	-	IEA	Process
GO:0045089	positive regulation of innate immune response	-	ISO	Process
GO:0051607	defense response to virus	-	IEA	Process