EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000027509 (Gene tree)
Gene ID: 66679
Gene Symbol: Rae1
Alias: 41|D2Ertd342e|MNRP|MNRP41
Full Name: ribonucleic acid export 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 15623
Position: chr2: 173000117-173015739
Accession: 1913929
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000138237	-	506	-	-	- (aa)	-	-
ENSMUST00000029013	-	1742	XM_006500023	ENSMUSP00000029013	368 (aa)	XP_006500086	Q8C570
ENSMUST00000123039	-	787	-	-	- (aa)	-	-
ENSMUST00000132212	-	742	-	ENSMUSP00000121815	203 (aa)	-	A2ASC6
ENSMUST00000124793	-	558	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000027509's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG
mmu05164	Influenza A	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000027509's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000027509	Rae1	95	68.768	FBgn0034646	Rae1	99	68.768	Drosophila_melanogaster
ENSMUSG00000027509	Rae1	91	34.911	ENSG00000154473	BUB3	98	34.911	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000972	transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery	21873635.	IBA	Process
GO:0001650	fibrillar center	-	ISO	Component
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005635	nuclear envelope	-	ISO	Component
GO:0005643	nuclear pore	21873635.	IBA	Component
GO:0005643	nuclear pore	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0006406	mRNA export from nucleus	-	IEA	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0043130	ubiquitin binding	21873635.	IBA	Function
GO:0051301	cell division	-	IEA	Process
GO:0060236	regulation of mitotic spindle organization	-	ISO	Process
GO:0071407	cellular response to organic cyclic compound	11567106.	IDA	Process
GO:0097431	mitotic spindle pole	-	ISO	Component