EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000027510 (Gene tree)
Gene ID
56190
Gene Symbol
Rbm38
Alias
Rnpc1|Seb4l
Full Name
RNA binding motif protein 38
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
14237 bases
Position
chr2:173020498-173034734
Accession
1889294
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000029014RRM_1PF00076.221.4e-1711
ENSMUSP00000133816RRM_1PF00076.221.4e-1711
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
25993413Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle ProgressionIC & MEF2015Boucas JDOI: 10.1371/journal.pone.0125745
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
23912277The RNA binding protein repertoire of embryonic stem cellsIC & mESC2013 Aug 4Kwon SCDOI: 10.1038/nsmb.2638
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseRBDmap & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000173997-440XM_006499924ENSMUSP00000133464125 (aa)XP_006499987G3UWX7
ENSMUST00000173878-936-ENSMUSP0000013338878 (aa)-G3UWQ8
ENSMUST00000029014-1768-ENSMUSP00000029014237 (aa)-Q62176
ENSMUST00000173979-758-ENSMUSP0000013368129 (aa)-G3UXG4
ENSMUST00000173393-2071-ENSMUSP00000133816237 (aa)-Q62176
ENSMUST00000155512-2281--- (aa)--
ENSMUST00000173720-620-ENSMUSP00000133757108 (aa)-G3UXN1
ENSMUST00000130430-1527--- (aa)--
Gene Model
Click here to download ENSMUSG00000027510's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000027510's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000027510Rbm385136.364ENSMUSG00000000568Hnrnpd5136.364
ENSMUSG00000027510Rbm386938.095ENSMUSG00000069769Msi28633.562
ENSMUSG00000027510Rbm386646.809ENSMUSG00000054256Msi16151.064
ENSMUSG00000027510Rbm386391.837ENSMUSG00000038132Rbm2410068.067
ENSMUSG00000027510Rbm387338.043ENSMUSG00000045193Cirbp7840.476
ENSMUSG00000027510Rbm387735.484ENSMUSG00000069565Dazap18635.802
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000027510Rbm3810094.561ENSG00000132819RBM3810095.570Homo_sapiens
ENSMUSG00000027510Rbm388958.621ENSAPOG00000003301rbm389158.621Acanthochromis_polyacanthus
ENSMUSG00000027510Rbm389464.758ENSAPOG00000009939-9762.115Acanthochromis_polyacanthus
ENSMUSG00000027510Rbm388956.652ENSACIG00000000010rbm389156.652Amphilophus_citrinellus
ENSMUSG00000027510Rbm389466.087ENSACIG00000012502-10087.179Amphilophus_citrinellus
ENSMUSG00000027510Rbm389563.913ENSAOCG00000012559RBM389361.739Amphiprion_ocellaris
ENSMUSG00000027510Rbm388958.621ENSAOCG00000013497-9158.621Amphiprion_ocellaris
ENSMUSG00000027510Rbm388962.791ENSAPEG00000013137rbm388862.791Amphiprion_percula
ENSMUSG00000027510Rbm389462.295ENSAPEG00000023581-9760.494Amphiprion_percula
ENSMUSG00000027510Rbm389161.161ENSATEG00000016366rbm389461.161Anabas_testudineus
ENSMUSG00000027510Rbm389462.551ENSATEG00000016710-9262.771Anabas_testudineus
ENSMUSG00000027510Rbm389277.727ENSACAG00000016238RBM389572.609Anolis_carolinensis
ENSMUSG00000027510Rbm389195.370ENSANAG00000031959RBM3810095.370Aotus_nancymaae
ENSMUSG00000027510Rbm389463.786ENSACLG00000019514-9761.317Astatotilapia_calliptera
ENSMUSG00000027510Rbm389465.532ENSAMXG00000015601-9764.255Astyanax_mexicanus
ENSMUSG00000027510Rbm387863.784ENSAMXG00000038120rbm387067.683Astyanax_mexicanus
ENSMUSG00000027510Rbm3810091.213ENSBTAG00000008105RBM3810091.213Bos_taurus
ENSMUSG00000027510Rbm385579.070WBGene00006321sup-125984.270Caenorhabditis_elegans
ENSMUSG00000027510Rbm3810093.305ENSCJAG00000019139RBM3810094.215Callithrix_jacchus
ENSMUSG00000027510Rbm3810091.632ENSCAFG00020021943RBM3810091.632Canis_lupus_dingo
ENSMUSG00000027510Rbm3810090.377ENSCHIG00000002609RBM3810090.377Capra_hircus
ENSMUSG00000027510Rbm3810093.724ENSCPOG00000012781RBM3810093.724Cavia_porcellus
ENSMUSG00000027510Rbm3810093.305ENSCCAG00000036872RBM3810094.215Cebus_capucinus
ENSMUSG00000027510Rbm3810093.724ENSCATG00000032133RBM3810094.215Cercocebus_atys
ENSMUSG00000027510Rbm389595.133ENSCLAG00000005906RBM389895.133Chinchilla_lanigera
ENSMUSG00000027510Rbm3810093.724ENSCSAG00000015503RBM3810093.724Chlorocebus_sabaeus
ENSMUSG00000027510Rbm389181.193ENSCPBG00000024059RBM3810077.982Chrysemys_picta_bellii
ENSMUSG00000027510Rbm389971.849ENSCANG00000030105-8971.849Colobus_angolensis_palliatus
ENSMUSG00000027510Rbm3810095.781ENSCGRG00001012928Rbm3810095.781Cricetulus_griseus_chok1gshd
ENSMUSG00000027510Rbm389368.421ENSCSEG00000004701-9666.228Cynoglossus_semilaevis
ENSMUSG00000027510Rbm388363.077ENSCSEG00000020943rbm385664.881Cynoglossus_semilaevis
ENSMUSG00000027510Rbm388965.948ENSCVAG00000005472-9264.103Cyprinodon_variegatus
ENSMUSG00000027510Rbm388959.052ENSCVAG00000015952rbm389159.657Cyprinodon_variegatus
ENSMUSG00000027510Rbm385895.556ENSDARG00000058818rbm389261.435Danio_rerio
ENSMUSG00000027510Rbm389188.426ENSDNOG00000032004RBM3810085.185Dasypus_novemcinctus
ENSMUSG00000027510Rbm387878.689ENSEBUG00000015164rbm386881.818Eptatretus_burgeri
ENSMUSG00000027510Rbm3810089.958ENSECAG00000007700RBM3810089.958Equus_caballus
ENSMUSG00000027510Rbm3810088.750ENSEEUG00000013489RBM3810087.917Erinaceus_europaeus
ENSMUSG00000027510Rbm389264.854ENSELUG00000005849-9563.291Esox_lucius
ENSMUSG00000027510Rbm386388.000ENSELUG00000000585-8764.677Esox_lucius
ENSMUSG00000027510Rbm3810092.469ENSFCAG00000042916RBM3810092.562Felis_catus
ENSMUSG00000027510Rbm387582.022ENSFALG00000010805RBM388881.287Ficedula_albicollis
ENSMUSG00000027510Rbm388957.082ENSFHEG00000017748rbm389157.082Fundulus_heteroclitus
ENSMUSG00000027510Rbm388971.759ENSFHEG00000006160-9268.837Fundulus_heteroclitus
ENSMUSG00000027510Rbm385893.333ENSGMOG00000016655-8775.460Gadus_morhua
ENSMUSG00000027510Rbm389179.358ENSGALG00000026081RBM3810076.147Gallus_gallus
ENSMUSG00000027510Rbm389167.411ENSGACG00000009873-10063.839Gasterosteus_aculeatus
ENSMUSG00000027510Rbm388962.736ENSGACG00000015224rbm389862.911Gasterosteus_aculeatus
ENSMUSG00000027510Rbm389181.651ENSGAGG00000001187RBM3810078.440Gopherus_agassizii
ENSMUSG00000027510Rbm389467.391ENSHBUG00000011778-9764.783Haplochromis_burtoni
ENSMUSG00000027510Rbm3810058.367ENSHBUG00000012058rbm3810058.367Haplochromis_burtoni
ENSMUSG00000027510Rbm3810091.632ENSHGLG00000015077RBM3810091.632Heterocephalus_glaber_female
ENSMUSG00000027510Rbm387180.702ENSHCOG00000005622-5567.857Hippocampus_comes
ENSMUSG00000027510Rbm385679.545ENSHCOG00000019040rbm386568.212Hippocampus_comes
ENSMUSG00000027510Rbm3810061.111ENSIPUG00000019349-10059.127Ictalurus_punctatus
ENSMUSG00000027510Rbm389592.105ENSJJAG00000016299-9592.105Jaculus_jaculus
ENSMUSG00000027510Rbm388952.966ENSKMAG00000012402rbm389852.966Kryptolebias_marmoratus
ENSMUSG00000027510Rbm388958.369ENSLBEG00000018878rbm389158.369Labrus_bergylta
ENSMUSG00000027510Rbm389466.522ENSLBEG00000016163RBM389266.514Labrus_bergylta
ENSMUSG00000027510Rbm389271.239ENSLOCG00000003456rbm389569.027Lepisosteus_oculatus
ENSMUSG00000027510Rbm389793.966ENSMFAG00000043808RBM389793.966Macaca_fascicularis
ENSMUSG00000027510Rbm3810093.724ENSMMUG00000031391RBM3810094.215Macaca_mulatta
ENSMUSG00000027510Rbm3810093.724ENSMNEG00000034683RBM3810094.215Macaca_nemestrina
ENSMUSG00000027510Rbm385670.455ENSMLEG00000043261-8882.569Mandrillus_leucophaeus
ENSMUSG00000027510Rbm388958.798ENSMAMG00000024135rbm389158.798Mastacembelus_armatus
ENSMUSG00000027510Rbm389462.397ENSMAMG00000020499RBM389761.157Mastacembelus_armatus
ENSMUSG00000027510Rbm389467.391ENSMZEG00005000849-9764.783Maylandia_zebra
ENSMUSG00000027510Rbm388957.082ENSMZEG00005026036rbm389157.082Maylandia_zebra
ENSMUSG00000027510Rbm3810096.203ENSMAUG00000021211Rbm3810096.203Mesocricetus_auratus
ENSMUSG00000027510Rbm389195.370ENSMICG00000038011RBM3810095.370Microcebus_murinus
ENSMUSG00000027510Rbm3810096.203ENSMOCG00000008715Rbm3810096.203Microtus_ochrogaster
ENSMUSG00000027510Rbm389467.105ENSMMOG00000020051-9664.474Mola_mola
ENSMUSG00000027510Rbm3810077.917ENSMODG00000016458RBM3810075.417Monodelphis_domestica
ENSMUSG00000027510Rbm387180.702ENSMALG00000004680RBM387268.394Monopterus_albus
ENSMUSG00000027510Rbm386379.592ENSMALG00000022327rbm386771.613Monopterus_albus
ENSMUSG00000027510Rbm38100100.000MGP_CAROLIEiJ_G0024745Rbm38100100.000Mus_caroli
ENSMUSG00000027510Rbm3810098.718MGP_PahariEiJ_G0026186Rbm3810098.718Mus_pahari
ENSMUSG00000027510Rbm38100100.000MGP_SPRETEiJ_G0025665Rbm38100100.000Mus_spretus
ENSMUSG00000027510Rbm387895.135ENSMPUG00000006518RBM389593.717Mustela_putorius_furo
ENSMUSG00000027510Rbm389191.204ENSMLUG00000011140RBM3810091.204Myotis_lucifugus
ENSMUSG00000027510Rbm389782.278ENSNGAG00000014017-6486.486Nannospalax_galili
ENSMUSG00000027510Rbm3810057.724ENSNBRG00000022685rbm389957.724Neolamprologus_brichardi
ENSMUSG00000027510Rbm389463.786ENSNBRG00000022545-9761.317Neolamprologus_brichardi
ENSMUSG00000027510Rbm389077.778ENSMEUG00000005475-10073.188Notamacropus_eugenii
ENSMUSG00000027510Rbm3810093.724ENSODEG00000007980RBM3810093.724Octodon_degus
ENSMUSG00000027510Rbm389363.636ENSONIG00000020324-9263.043Oreochromis_niloticus
ENSMUSG00000027510Rbm388957.328ENSONIG00000017073rbm389358.190Oreochromis_niloticus
ENSMUSG00000027510Rbm389179.630ENSOANG00000009259RBM388376.389Ornithorhynchus_anatinus
ENSMUSG00000027510Rbm388963.362ENSORLG00000027180-9262.069Oryzias_latipes
ENSMUSG00000027510Rbm386382.000ENSORLG00000012154rbm389154.701Oryzias_latipes
ENSMUSG00000027510Rbm386382.000ENSORLG00020017871rbm389155.556Oryzias_latipes_hni
ENSMUSG00000027510Rbm388963.362ENSORLG00020020751-9262.069Oryzias_latipes_hni
ENSMUSG00000027510Rbm388962.771ENSORLG00015017040-9262.931Oryzias_latipes_hsok
ENSMUSG00000027510Rbm389058.525ENSORLG00015012606rbm389058.525Oryzias_latipes_hsok
ENSMUSG00000027510Rbm388962.771ENSOMEG00000023912-9261.304Oryzias_melastigma
ENSMUSG00000027510Rbm388955.128ENSOMEG00000006805rbm389155.128Oryzias_melastigma
ENSMUSG00000027510Rbm3810092.917ENSOGAG00000029136RBM3810092.917Otolemur_garnettii
ENSMUSG00000027510Rbm386397.959ENSPPAG00000040327-8581.159Pan_paniscus
ENSMUSG00000027510Rbm3810092.469ENSPPRG00000009507RBM3810092.562Panthera_pardus
ENSMUSG00000027510Rbm389290.541ENSPTRG00000013661RBM3810094.215Pan_troglodytes
ENSMUSG00000027510Rbm3863100.000ENSPTRG00000045845-7096.094Pan_troglodytes
ENSMUSG00000027510Rbm389872.996ENSPANG00000033127-9972.689Papio_anubis
ENSMUSG00000027510Rbm3810093.724ENSPANG00000020919-10094.215Papio_anubis
ENSMUSG00000027510Rbm389662.097ENSPKIG00000025417rbm389960.081Paramormyrops_kingsleyae
ENSMUSG00000027510Rbm388967.273ENSPKIG00000018122-10088.034Paramormyrops_kingsleyae
ENSMUSG00000027510Rbm389777.922ENSPSIG00000011649RBM389774.892Pelodiscus_sinensis
ENSMUSG00000027510Rbm389260.000ENSPMGG00000017094-9459.833Periophthalmus_magnuspinnatus
ENSMUSG00000027510Rbm389157.143ENSPMGG00000011343rbm386569.565Periophthalmus_magnuspinnatus
ENSMUSG00000027510Rbm3810077.917ENSPCIG00000013648RBM3810075.417Phascolarctos_cinereus
ENSMUSG00000027510Rbm385886.667ENSPFOG00000011658rbm389158.120Poecilia_formosa
ENSMUSG00000027510Rbm388956.118ENSPLAG00000005218rbm389158.120Poecilia_latipinna
ENSMUSG00000027510Rbm388966.383ENSPLAG00000002500-9264.103Poecilia_latipinna
ENSMUSG00000027510Rbm385886.667ENSPMEG00000015770rbm389158.120Poecilia_mexicana
ENSMUSG00000027510Rbm388955.696ENSPREG00000007398rbm389158.547Poecilia_reticulata
ENSMUSG00000027510Rbm3810093.333ENSPCOG00000026201RBM3810093.443Propithecus_coquereli
ENSMUSG00000027510Rbm389088.889ENSPVAG00000006457RBM3810064.435Pteropus_vampyrus
ENSMUSG00000027510Rbm3810057.202ENSPNYG00000021373rbm3810055.600Pundamilia_nyererei
ENSMUSG00000027510Rbm388969.725ENSPNYG00000019727-10088.034Pundamilia_nyererei
ENSMUSG00000027510Rbm389266.667ENSPNAG00000015123-9677.273Pygocentrus_nattereri
ENSMUSG00000027510Rbm386091.489ENSPNAG00000010596rbm388861.972Pygocentrus_nattereri
ENSMUSG00000027510Rbm3810097.890ENSRNOG00000006420Rbm3810097.890Rattus_norvegicus
ENSMUSG00000027510Rbm3810076.987ENSRROG00000036388-10076.987Rhinopithecus_roxellana
ENSMUSG00000027510Rbm389194.444ENSSBOG00000031053RBM3810097.196Saimiri_boliviensis_boliviensis
ENSMUSG00000027510Rbm389464.935ENSSFOG00015004453rbm389266.818Scleropages_formosus
ENSMUSG00000027510Rbm389463.265ENSSDUG00000021082RBM389262.931Seriola_dumerili
ENSMUSG00000027510Rbm388959.657ENSSDUG00000022611rbm389159.657Seriola_dumerili
ENSMUSG00000027510Rbm389760.169ENSSLDG00000010845rbm389760.169Seriola_lalandi_dorsalis
ENSMUSG00000027510Rbm389463.265ENSSLDG00000011778RBM389262.931Seriola_lalandi_dorsalis
ENSMUSG00000027510Rbm389464.889ENSSPAG00000020989RBM389165.888Stegastes_partitus
ENSMUSG00000027510Rbm388958.369ENSSPAG00000011113rbm389158.369Stegastes_partitus
ENSMUSG00000027510Rbm3810092.887ENSSSCG00000007504RBM3810092.887Sus_scrofa
ENSMUSG00000027510Rbm389463.934ENSTRUG00000019869-9264.655Takifugu_rubripes
ENSMUSG00000027510Rbm388956.332ENSTRUG00000024954rbm389155.895Takifugu_rubripes
ENSMUSG00000027510Rbm388969.231ENSTNIG00000007093-9766.968Tetraodon_nigroviridis
ENSMUSG00000027510Rbm389074.286ENSTBEG00000001689-6483.333Tupaia_belangeri
ENSMUSG00000027510Rbm3810092.887ENSUAMG00000019780RBM3810092.887Ursus_americanus
ENSMUSG00000027510Rbm3810091.632ENSVVUG00000017246RBM3810091.632Vulpes_vulpes
ENSMUSG00000027510Rbm389273.333ENSXETG00000011268rbm3810071.556Xenopus_tropicalis
ENSMUSG00000027510Rbm385993.478ENSXCOG00000017324-6077.444Xiphophorus_couchianus
ENSMUSG00000027510Rbm388957.627ENSXMAG00000023662rbm389158.369Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0003729mRNA binding21873635.IBAFunction
GO:0003729mRNA binding19817877.IMPFunction
GO:0003729mRNA binding-ISOFunction
GO:0003730mRNA 3'-UTR binding21873635.IBAFunction
GO:0003730mRNA 3'-UTR binding-ISOFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus-ISOComponent
GO:0005737cytoplasm-IEAComponent
GO:0005829cytosol21873635.IBAComponent
GO:0005829cytosol-ISOComponent
GO:0006397mRNA processing21873635.IBAProcess
GO:0006977DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest-ISOProcess
GO:0006978DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator-ISOProcess
GO:0007049cell cycle-IEAProcess
GO:0008285negative regulation of cell proliferation-ISOProcess
GO:0008380RNA splicing-IEAProcess
GO:0010830regulation of myotube differentiation19817877.IDAProcess
GO:0030154cell differentiation-IEAProcess
GO:0043484regulation of RNA splicing-ISOProcess
GO:00709353'-UTR-mediated mRNA stabilization21873635.IBAProcess
GO:00709353'-UTR-mediated mRNA stabilization-ISOProcess
GO:1990904ribonucleoprotein complex21873635.IBAComponent

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