EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000027547 (Gene tree)
Gene ID: 99377
Gene Symbol: Sall4
Alias: 5730441M18Rik|C330011P20Rik|Tex20
Full Name: spalt like transcription factor 4
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 19612 bases
Position: chr2:168748332-168767943
Accession: 2139360
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000029061	zf-C2H2	PF00096.26	1.7e-29	1	6
ENSMUSP00000029061	zf-C2H2	PF00096.26	1.7e-29	2	6
ENSMUSP00000029061	zf-C2H2	PF00096.26	1.7e-29	3	6
ENSMUSP00000029061	zf-C2H2	PF00096.26	1.7e-29	4	6
ENSMUSP00000029061	zf-C2H2	PF00096.26	1.7e-29	5	6
ENSMUSP00000029061	zf-C2H2	PF00096.26	1.7e-29	6	6
ENSMUSP00000119628	zf-C2H2	PF00096.26	2.5e-13	1	2
ENSMUSP00000119628	zf-C2H2	PF00096.26	2.5e-13	2	2
ENSMUSP00000074556	zf-C2H2	PF00096.26	4.1e-11	1	2
ENSMUSP00000074556	zf-C2H2	PF00096.26	4.1e-11	2	2
ENSMUSP00000099363	zf-C2H2	PF00096.26	4.2e-08	1	2
ENSMUSP00000099363	zf-C2H2	PF00096.26	4.2e-08	2	2
ENSMUSP00000029061	zf-met	PF12874.7	2.9e-11	1	1
ENSMUSP00000119628	zf-met	PF12874.7	1.8e-09	1	2
ENSMUSP00000119628	zf-met	PF12874.7	1.8e-09	2	2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000137536	-	773	-	ENSMUSP00000115646	215 (aa)	-	A2AUZ7
ENSMUST00000150588	-	393	-	ENSMUSP00000119628	131 (aa)	-	A2AUZ6
ENSMUST00000103074	-	3741	-	ENSMUSP00000099363	623 (aa)	-	Q8BX22
ENSMUST00000130640	-	328	-	-	- (aa)	-	-
ENSMUST00000029061	-	5073	XM_006500486	ENSMUSP00000029061	1067 (aa)	XP_006500549	Q8BX22
ENSMUST00000125138	-	423	-	-	- (aa)	-	-
ENSMUST00000075044	-	2534	-	ENSMUSP00000074556	278 (aa)	-	Q8BX22

Gene Model

Click here to download ENSMUSG00000027547's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000027547's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000027547	Sall4	100	64.706	ENSMUSG00000031665	Sall1	95	64.706
ENSMUSG00000027547	Sall4	98	84.507	ENSMUSG00000024565	Sall3	66	65.385

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000027547	Sall4	100	95.833	ENSG00000101115	SALL4	100	78.333	Homo_sapiens
ENSMUSG00000027547	Sall4	100	84.722	ENSAPOG00000002465	sall4	100	42.105	Acanthochromis_polyacanthus
ENSMUSG00000027547	Sall4	100	95.833	ENSAMEG00000013250	-	100	72.955	Ailuropoda_melanoleuca
ENSMUSG00000027547	Sall4	93	80.556	ENSACIG00000017298	sall4	100	41.724	Amphilophus_citrinellus
ENSMUSG00000027547	Sall4	100	84.722	ENSAOCG00000023678	sall4	100	42.919	Amphiprion_ocellaris
ENSMUSG00000027547	Sall4	100	84.722	ENSAPEG00000000751	sall4	100	42.609	Amphiprion_percula
ENSMUSG00000027547	Sall4	100	84.722	ENSATEG00000024480	sall4	100	42.539	Anabas_testudineus
ENSMUSG00000027547	Sall4	98	87.500	ENSAPLG00000006498	SALL4	100	52.389	Anas_platyrhynchos
ENSMUSG00000027547	Sall4	100	87.500	ENSACAG00000012748	SALL4	100	52.257	Anolis_carolinensis
ENSMUSG00000027547	Sall4	100	95.833	ENSANAG00000023352	SALL4	100	78.661	Aotus_nancymaae
ENSMUSG00000027547	Sall4	100	81.944	ENSACLG00000017851	sall4	100	41.897	Astatotilapia_calliptera
ENSMUSG00000027547	Sall4	100	86.111	ENSAMXG00000001254	sall4	99	43.728	Astyanax_mexicanus
ENSMUSG00000027547	Sall4	100	91.667	ENSBTAG00000003101	SALL4	100	67.870	Bos_taurus
ENSMUSG00000027547	Sall4	100	95.833	ENSCJAG00000000591	SALL4	99	73.903	Callithrix_jacchus
ENSMUSG00000027547	Sall4	100	94.444	ENSCAFG00000011738	-	100	72.439	Canis_familiaris
ENSMUSG00000027547	Sall4	100	94.444	ENSCAFG00020021870	SALL4	100	72.346	Canis_lupus_dingo
ENSMUSG00000027547	Sall4	100	87.500	ENSCHIG00000026270	SALL4	100	67.098	Capra_hircus
ENSMUSG00000027547	Sall4	100	95.833	ENSTSYG00000007359	SALL4	100	75.732	Carlito_syrichta
ENSMUSG00000027547	Sall4	99	91.549	ENSCAPG00000012135	SALL4	97	72.464	Cavia_aperea
ENSMUSG00000027547	Sall4	100	78.853	ENSCPOG00000036300	-	100	79.916	Cavia_porcellus
ENSMUSG00000027547	Sall4	99	79.231	ENSCPOG00000038489	-	99	91.429	Cavia_porcellus
ENSMUSG00000027547	Sall4	100	94.444	ENSCCAG00000029512	-	100	71.719	Cebus_capucinus
ENSMUSG00000027547	Sall4	100	95.833	ENSCATG00000030757	SALL4	100	78.750	Cercocebus_atys
ENSMUSG00000027547	Sall4	100	91.667	ENSCLAG00000010479	SALL4	100	81.590	Chinchilla_lanigera
ENSMUSG00000027547	Sall4	100	95.833	ENSCSAG00000015269	SALL4	100	73.998	Chlorocebus_sabaeus
ENSMUSG00000027547	Sall4	98	87.500	ENSCPBG00000014995	SALL4	100	52.526	Chrysemys_picta_bellii
ENSMUSG00000027547	Sall4	100	95.833	ENSCANG00000036463	SALL4	100	73.812	Colobus_angolensis_palliatus
ENSMUSG00000027547	Sall4	100	95.833	ENSCGRG00001019569	Sall4	100	83.094	Cricetulus_griseus_chok1gshd
ENSMUSG00000027547	Sall4	100	95.833	ENSCGRG00000000462	Sall4	100	87.786	Cricetulus_griseus_crigri
ENSMUSG00000027547	Sall4	100	84.722	ENSCSEG00000014604	sall4	100	42.414	Cynoglossus_semilaevis
ENSMUSG00000027547	Sall4	100	83.333	ENSCVAG00000010815	sall4	100	42.351	Cyprinodon_variegatus
ENSMUSG00000027547	Sall4	100	84.722	ENSDARG00000044485	sall4	99	42.331	Danio_rerio
ENSMUSG00000027547	Sall4	100	94.444	ENSDNOG00000040633	SALL4	100	71.907	Dasypus_novemcinctus
ENSMUSG00000027547	Sall4	100	88.889	ENSDORG00000012841	Sall4	100	86.517	Dipodomys_ordii
ENSMUSG00000027547	Sall4	89	71.486	ENSETEG00000012475	-	66	67.710	Echinops_telfairi
ENSMUSG00000027547	Sall4	51	70.370	ENSEBUG00000015425	-	58	70.370	Eptatretus_burgeri
ENSMUSG00000027547	Sall4	100	95.833	ENSECAG00000018533	SALL4	100	73.581	Equus_caballus
ENSMUSG00000027547	Sall4	100	95.833	ENSEEUG00000003649	SALL4	99	70.298	Erinaceus_europaeus
ENSMUSG00000027547	Sall4	100	84.722	ENSELUG00000005696	sall4	100	42.988	Esox_lucius
ENSMUSG00000027547	Sall4	100	94.444	ENSFCAG00000002822	SALL4	100	77.824	Felis_catus
ENSMUSG00000027547	Sall4	98	90.141	ENSFALG00000013149	SALL4	100	51.694	Ficedula_albicollis
ENSMUSG00000027547	Sall4	100	93.056	ENSFDAG00000017812	SALL4	100	79.079	Fukomys_damarensis
ENSMUSG00000027547	Sall4	100	86.111	ENSFHEG00000014187	sall4	100	42.178	Fundulus_heteroclitus
ENSMUSG00000027547	Sall4	100	84.722	ENSGMOG00000003822	sall4	100	42.424	Gadus_morhua
ENSMUSG00000027547	Sall4	98	87.500	ENSGALG00000041365	SALL4	100	52.426	Gallus_gallus
ENSMUSG00000027547	Sall4	100	86.111	ENSGAFG00000019925	sall4	100	42.634	Gambusia_affinis
ENSMUSG00000027547	Sall4	92	84.722	ENSGACG00000011124	sall4	100	41.738	Gasterosteus_aculeatus
ENSMUSG00000027547	Sall4	98	87.500	ENSGAGG00000002297	SALL4	100	52.604	Gopherus_agassizii
ENSMUSG00000027547	Sall4	100	95.833	ENSGGOG00000001832	SALL4	100	78.750	Gorilla_gorilla
ENSMUSG00000027547	Sall4	100	81.944	ENSHBUG00000007327	sall4	100	41.724	Haplochromis_burtoni
ENSMUSG00000027547	Sall4	100	94.444	ENSHGLG00000009043	SALL4	96	72.330	Heterocephalus_glaber_female
ENSMUSG00000027547	Sall4	100	94.444	ENSHGLG00100002722	SALL4	96	72.427	Heterocephalus_glaber_male
ENSMUSG00000027547	Sall4	100	84.722	ENSHCOG00000008519	sall4	100	42.046	Hippocampus_comes
ENSMUSG00000027547	Sall4	100	86.111	ENSIPUG00000019170	sall4	99	42.638	Ictalurus_punctatus
ENSMUSG00000027547	Sall4	100	83.969	ENSSTOG00000025002	SALL4	100	94.366	Ictidomys_tridecemlineatus
ENSMUSG00000027547	Sall4	98	98.611	ENSJJAG00000020688	Sall4	98	98.592	Jaculus_jaculus
ENSMUSG00000027547	Sall4	100	84.722	ENSKMAG00000002501	sall4	100	42.274	Kryptolebias_marmoratus
ENSMUSG00000027547	Sall4	100	84.722	ENSLBEG00000019951	sall4	100	43.227	Labrus_bergylta
ENSMUSG00000027547	Sall4	50	62.687	ENSLBEG00000002594	-	62	58.228	Labrus_bergylta
ENSMUSG00000027547	Sall4	99	56.198	ENSLACG00000013898	SALL4	100	58.889	Latimeria_chalumnae
ENSMUSG00000027547	Sall4	100	84.722	ENSLOCG00000002427	sall4	100	44.881	Lepisosteus_oculatus
ENSMUSG00000027547	Sall4	100	97.222	ENSLAFG00000004309	SALL4	100	73.483	Loxodonta_africana
ENSMUSG00000027547	Sall4	100	95.833	ENSMFAG00000027169	SALL4	100	74.185	Macaca_fascicularis
ENSMUSG00000027547	Sall4	100	95.833	ENSMMUG00000003870	SALL4	100	78.750	Macaca_mulatta
ENSMUSG00000027547	Sall4	100	95.833	ENSMNEG00000035995	SALL4	100	78.750	Macaca_nemestrina
ENSMUSG00000027547	Sall4	100	95.833	ENSMLEG00000030467	SALL4	100	73.998	Mandrillus_leucophaeus
ENSMUSG00000027547	Sall4	100	84.722	ENSMAMG00000005223	sall4	100	42.809	Mastacembelus_armatus
ENSMUSG00000027547	Sall4	100	81.944	ENSMZEG00005023418	sall4	100	41.969	Maylandia_zebra
ENSMUSG00000027547	Sall4	98	87.500	ENSMGAG00000009344	SALL4	99	65.385	Meleagris_gallopavo
ENSMUSG00000027547	Sall4	100	93.056	ENSMAUG00000015814	Sall4	100	93.056	Mesocricetus_auratus
ENSMUSG00000027547	Sall4	100	97.222	ENSMICG00000000027	SALL4	100	77.406	Microcebus_murinus
ENSMUSG00000027547	Sall4	100	94.521	ENSMOCG00000018245	Sall4	100	94.521	Microtus_ochrogaster
ENSMUSG00000027547	Sall4	100	84.722	ENSMMOG00000014929	sall4	100	42.105	Mola_mola
ENSMUSG00000027547	Sall4	100	86.111	ENSMODG00000016387	SALL4	97	56.128	Monodelphis_domestica
ENSMUSG00000027547	Sall4	100	84.722	ENSMALG00000018709	sall4	100	42.747	Monopterus_albus
ENSMUSG00000027547	Sall4	100	100.000	MGP_CAROLIEiJ_G0024723	Sall4	100	100.000	Mus_caroli
ENSMUSG00000027547	Sall4	100	98.611	MGP_PahariEiJ_G0026164	Sall4	100	98.611	Mus_pahari
ENSMUSG00000027547	Sall4	100	100.000	MGP_SPRETEiJ_G0025643	Sall4	100	100.000	Mus_spretus
ENSMUSG00000027547	Sall4	98	94.444	ENSMPUG00000017543	SALL4	96	72.263	Mustela_putorius_furo
ENSMUSG00000027547	Sall4	98	88.889	ENSMLUG00000008405	-	100	64.513	Myotis_lucifugus
ENSMUSG00000027547	Sall4	98	91.667	ENSMLUG00000007060	-	100	71.165	Myotis_lucifugus
ENSMUSG00000027547	Sall4	94	71.212	ENSMLUG00000028073	-	99	51.869	Myotis_lucifugus
ENSMUSG00000027547	Sall4	100	94.444	ENSNGAG00000017833	Sall4	100	84.167	Nannospalax_galili
ENSMUSG00000027547	Sall4	97	81.944	ENSNBRG00000001829	sall4	100	41.902	Neolamprologus_brichardi
ENSMUSG00000027547	Sall4	100	95.833	ENSNLEG00000007013	SALL4	100	73.905	Nomascus_leucogenys
ENSMUSG00000027547	Sall4	100	86.111	ENSMEUG00000005793	-	99	61.538	Notamacropus_eugenii
ENSMUSG00000027547	Sall4	100	95.833	ENSOPRG00000011640	SALL4	100	70.528	Ochotona_princeps
ENSMUSG00000027547	Sall4	100	81.944	ENSONIG00000016557	sall4	100	42.038	Oreochromis_niloticus
ENSMUSG00000027547	Sall4	100	88.889	ENSOANG00000008667	SALL4	97	56.866	Ornithorhynchus_anatinus
ENSMUSG00000027547	Sall4	99	92.958	ENSOCUG00000011797	SALL4	100	71.787	Oryctolagus_cuniculus
ENSMUSG00000027547	Sall4	99	86.111	ENSORLG00000016130	sall4	100	43.563	Oryzias_latipes
ENSMUSG00000027547	Sall4	99	86.111	ENSORLG00020007339	sall4	100	42.188	Oryzias_latipes_hni
ENSMUSG00000027547	Sall4	99	86.111	ENSORLG00015002265	sall4	100	42.572	Oryzias_latipes_hsok
ENSMUSG00000027547	Sall4	99	86.111	ENSOMEG00000017344	sall4	100	42.073	Oryzias_melastigma
ENSMUSG00000027547	Sall4	100	94.444	ENSOGAG00000013799	SALL4	99	72.254	Otolemur_garnettii
ENSMUSG00000027547	Sall4	100	84.722	ENSOARG00000014570	SALL4	100	62.939	Ovis_aries
ENSMUSG00000027547	Sall4	100	95.833	ENSPPAG00000038064	SALL4	100	78.750	Pan_paniscus
ENSMUSG00000027547	Sall4	100	95.833	ENSPPRG00000008677	SALL4	100	76.987	Panthera_pardus
ENSMUSG00000027547	Sall4	100	95.833	ENSPTRG00000013631	SALL4	100	78.750	Pan_troglodytes
ENSMUSG00000027547	Sall4	100	95.833	ENSPANG00000021792	SALL4	100	78.750	Papio_anubis
ENSMUSG00000027547	Sall4	93	87.324	ENSPKIG00000007074	sall4	100	43.117	Paramormyrops_kingsleyae
ENSMUSG00000027547	Sall4	98	87.500	ENSPSIG00000009066	SALL4	100	52.083	Pelodiscus_sinensis
ENSMUSG00000027547	Sall4	100	83.333	ENSPMGG00000022551	sall4	100	41.135	Periophthalmus_magnuspinnatus
ENSMUSG00000027547	Sall4	100	97.222	ENSPEMG00000022706	Sall4	100	97.222	Peromyscus_maniculatus_bairdii
ENSMUSG00000027547	Sall4	100	87.500	ENSPCIG00000022838	SALL4	97	55.169	Phascolarctos_cinereus
ENSMUSG00000027547	Sall4	100	86.111	ENSPFOG00000001442	sall4	100	42.857	Poecilia_formosa
ENSMUSG00000027547	Sall4	100	86.111	ENSPLAG00000008760	sall4	100	42.771	Poecilia_latipinna
ENSMUSG00000027547	Sall4	100	86.111	ENSPMEG00000008497	sall4	100	42.820	Poecilia_mexicana
ENSMUSG00000027547	Sall4	99	85.915	ENSPREG00000021140	sall4	100	42.708	Poecilia_reticulata
ENSMUSG00000027547	Sall4	100	94.444	ENSPPYG00000011138	SALL4	100	73.532	Pongo_abelii
ENSMUSG00000027547	Sall4	100	94.444	ENSPCAG00000004726	SALL4	99	68.250	Procavia_capensis
ENSMUSG00000027547	Sall4	100	95.833	ENSPCOG00000016321	SALL4	100	77.824	Propithecus_coquereli
ENSMUSG00000027547	Sall4	98	90.278	ENSPVAG00000002075	SALL4	94	70.929	Pteropus_vampyrus
ENSMUSG00000027547	Sall4	100	81.944	ENSPNYG00000021738	sall4	100	41.760	Pundamilia_nyererei
ENSMUSG00000027547	Sall4	100	87.500	ENSPNAG00000020929	sall4	99	42.463	Pygocentrus_nattereri
ENSMUSG00000027547	Sall4	100	97.222	ENSRNOG00000050035	Sall4	100	88.889	Rattus_norvegicus
ENSMUSG00000027547	Sall4	100	95.833	ENSRBIG00000039876	SALL4	100	74.356	Rhinopithecus_bieti
ENSMUSG00000027547	Sall4	100	95.833	ENSRROG00000036585	SALL4	100	73.719	Rhinopithecus_roxellana
ENSMUSG00000027547	Sall4	100	95.833	ENSSBOG00000030011	SALL4	100	76.987	Saimiri_boliviensis_boliviensis
ENSMUSG00000027547	Sall4	100	86.111	ENSSHAG00000018013	SALL4	88	64.796	Sarcophilus_harrisii
ENSMUSG00000027547	Sall4	93	84.722	ENSSFOG00015021075	sall4	100	43.148	Scleropages_formosus
ENSMUSG00000027547	Sall4	100	84.722	ENSSMAG00000019218	sall4	99	42.857	Scophthalmus_maximus
ENSMUSG00000027547	Sall4	100	84.722	ENSSDUG00000004657	sall4	100	42.173	Seriola_dumerili
ENSMUSG00000027547	Sall4	100	84.722	ENSSLDG00000004973	sall4	100	42.601	Seriola_lalandi_dorsalis
ENSMUSG00000027547	Sall4	100	84.722	ENSSPAG00000001978	sall4	100	42.572	Stegastes_partitus
ENSMUSG00000027547	Sall4	98	94.444	ENSSSCG00000007479	SALL4	100	72.026	Sus_scrofa
ENSMUSG00000027547	Sall4	100	55.034	ENSTGUG00000018244	-	100	55.369	Taeniopygia_guttata
ENSMUSG00000027547	Sall4	100	84.722	ENSTRUG00000007410	sall4	100	43.328	Takifugu_rubripes
ENSMUSG00000027547	Sall4	100	84.722	ENSTNIG00000012460	sall4	100	42.596	Tetraodon_nigroviridis
ENSMUSG00000027547	Sall4	50	61.194	ENSTNIG00000013008	-	55	67.213	Tetraodon_nigroviridis
ENSMUSG00000027547	Sall4	100	95.833	ENSTTRG00000007753	SALL4	99	70.302	Tursiops_truncatus
ENSMUSG00000027547	Sall4	100	95.833	ENSUAMG00000010113	SALL4	100	73.141	Ursus_americanus
ENSMUSG00000027547	Sall4	100	95.833	ENSUMAG00000024274	SALL4	99	73.256	Ursus_maritimus
ENSMUSG00000027547	Sall4	98	85.915	ENSXETG00000012326	sall4	100	46.725	Xenopus_tropicalis
ENSMUSG00000027547	Sall4	100	86.111	ENSXCOG00000015467	sall4	100	40.177	Xiphophorus_couchianus
ENSMUSG00000027547	Sall4	100	86.111	ENSXMAG00000012692	sall4	100	40.760	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	16380715.	IGI	Process
GO:0000792	heterochromatin	17295837.	IDA	Component
GO:0001701	in utero embryonic development	17060609.	IMP	Process
GO:0001833	inner cell mass cell proliferation	16790473.	IMP	Process
GO:0001843	neural tube closure	16790473.	IGI	Process
GO:0001843	neural tube closure	16790473.	IMP	Process
GO:0003281	ventricular septum development	16790473.	IGI	Process
GO:0003281	ventricular septum development	16790473.	IMP	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0005515	protein binding	16380715.19483677.19796622.20362541.22510880.26523946.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	19796622.	IDA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005667	transcription factor complex	16380715.	IC	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006355	regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0007507	heart development	16380715.	IMP	Process
GO:0008134	transcription factor binding	26523946.	IPI	Function
GO:0009888	tissue development	17060609.	IMP	Process
GO:0019827	stem cell population maintenance	20720539.	IMP	Process
GO:0021915	neural tube development	18818376.	IGI	Process
GO:0030326	embryonic limb morphogenesis	16380715.	IGI	Process
GO:0030326	embryonic limb morphogenesis	16380715.	IMP	Process
GO:0032991	protein-containing complex	19796622.	IDA	Component
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0045944	positive regulation of transcription by RNA polymerase II	16380715.	IDA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	16380715.	IGI	Process
GO:0046872	metal ion binding	-	IEA	Function