EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000027593 (Gene tree)
Gene ID: 19383
Gene Symbol: Raly
Alias: Merc
Full Name: hnRNP-associated with lethal yellow
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 76166 bases
Position: chr2:154791096-154867261
Accession: 97850
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000119108	RRM_1	PF00076.22	2.4e-12	1	1
ENSMUSP00000114185	RRM_1	PF00076.22	4.8e-12	1	1
ENSMUSP00000058105	RRM_1	PF00076.22	9.1e-12	1	1
ENSMUSP00000105323	RRM_1	PF00076.22	9.1e-12	1	1
ENSMUSP00000119126	RRM_1	PF00076.22	9.6e-12	1	1
ENSMUSP00000029120	RRM_1	PF00076.22	1e-11	1	1
ENSMUSP00000112090	RRM_1	PF00076.22	1e-11	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000029120	-	1802	XM_006499013	ENSMUSP00000029120	312 (aa)	XP_006499076	Q64012
ENSMUST00000116389	-	1759	XM_006499015	ENSMUSP00000112090	312 (aa)	XP_006499078	Q64012
ENSMUST00000125872	-	546	-	ENSMUSP00000119108	141 (aa)	-	A2AU60
ENSMUST00000140713	-	1100	-	ENSMUSP00000119126	298 (aa)	-	A2AU62
ENSMUST00000129137	-	851	-	ENSMUSP00000114185	211 (aa)	-	A2AU61
ENSMUST00000145202	-	402	-	-	- (aa)	-	-
ENSMUST00000109701	-	1709	XM_006499016	ENSMUSP00000105323	296 (aa)	XP_006499079	Q64012
ENSMUST00000058089	-	1747	-	ENSMUSP00000058105	296 (aa)	-	Q64012
ENSMUST00000152038	-	1574	-	-	- (aa)	-	-
ENSMUST00000151578	-	337	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000027593's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000027593's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000027593	Raly	95	58.170	ENSMUSG00000060373	Hnrnpc	100	77.500
ENSMUSG00000027593	Raly	54	35.526	ENSMUSG00000016921	Srsf6	56	35.526
ENSMUSG00000027593	Raly	51	32.500	ENSMUSG00000031134	Rbmx	77	32.500
ENSMUSG00000027593	Raly	100	62.941	ENSMUSG00000039717	Ralyl	100	80.000
ENSMUSG00000027593	Raly	55	31.707	ENSMUSG00000024097	Srsf7	59	31.707

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000027593	Raly	100	95.745	ENSG00000125970	RALY	100	95.506	Homo_sapiens
ENSMUSG00000027593	Raly	99	74.839	ENSAPOG00000001026	raly	72	75.472	Acanthochromis_polyacanthus
ENSMUSG00000027593	Raly	100	89.172	ENSAMEG00000009050	RALY	100	84.615	Ailuropoda_melanoleuca
ENSMUSG00000027593	Raly	100	77.707	ENSACIG00000024288	raly	87	75.771	Amphilophus_citrinellus
ENSMUSG00000027593	Raly	99	75.484	ENSAOCG00000009883	raly	65	75.472	Amphiprion_ocellaris
ENSMUSG00000027593	Raly	99	76.129	ENSAPEG00000024106	raly	65	75.943	Amphiprion_percula
ENSMUSG00000027593	Raly	100	78.344	ENSATEG00000004870	raly	72	74.661	Anabas_testudineus
ENSMUSG00000027593	Raly	99	78.319	ENSAPLG00000012983	RALY	94	69.900	Anas_platyrhynchos
ENSMUSG00000027593	Raly	100	80.255	ENSACAG00000008983	RALY	88	67.516	Anolis_carolinensis
ENSMUSG00000027593	Raly	100	96.454	ENSANAG00000019376	RALY	100	87.838	Aotus_nancymaae
ENSMUSG00000027593	Raly	100	85.816	ENSACLG00000007561	raly	67	76.037	Astatotilapia_calliptera
ENSMUSG00000027593	Raly	100	98.582	ENSBTAG00000016524	RALY	100	88.176	Bos_taurus
ENSMUSG00000027593	Raly	100	96.454	ENSCJAG00000018361	-	100	88.514	Callithrix_jacchus
ENSMUSG00000027593	Raly	100	95.035	ENSCJAG00000009449	-	100	87.500	Callithrix_jacchus
ENSMUSG00000027593	Raly	100	91.189	ENSCAFG00000007490	RALY	100	87.821	Canis_familiaris
ENSMUSG00000027593	Raly	100	91.630	ENSCAFG00020005069	RALY	100	88.141	Canis_lupus_dingo
ENSMUSG00000027593	Raly	100	90.749	ENSCHIG00000026609	RALY	100	88.141	Capra_hircus
ENSMUSG00000027593	Raly	100	95.745	ENSTSYG00000002598	RALY	99	82.770	Carlito_syrichta
ENSMUSG00000027593	Raly	100	90.995	ENSCAPG00000008110	RALY	100	90.995	Cavia_aperea
ENSMUSG00000027593	Raly	100	98.582	ENSCPOG00000000309	RALY	100	97.630	Cavia_porcellus
ENSMUSG00000027593	Raly	100	96.454	ENSCCAG00000024548	RALY	100	88.176	Cebus_capucinus
ENSMUSG00000027593	Raly	100	95.745	ENSCATG00000031769	RALY	100	87.162	Cercocebus_atys
ENSMUSG00000027593	Raly	100	98.582	ENSCLAG00000016899	RALY	100	89.226	Chinchilla_lanigera
ENSMUSG00000027593	Raly	99	87.500	ENSCSAG00000012199	RALY	100	86.667	Chlorocebus_sabaeus
ENSMUSG00000027593	Raly	96	83.562	ENSCHOG00000000266	RALY	97	87.611	Choloepus_hoffmanni
ENSMUSG00000027593	Raly	100	79.618	ENSCPBG00000019164	RALY	100	68.896	Chrysemys_picta_bellii
ENSMUSG00000027593	Raly	100	95.745	ENSCANG00000037952	RALY	100	88.176	Colobus_angolensis_palliatus
ENSMUSG00000027593	Raly	100	100.000	ENSCGRG00001014652	Raly	100	92.384	Cricetulus_griseus_chok1gshd
ENSMUSG00000027593	Raly	100	100.000	ENSCGRG00000011726	Raly	100	92.384	Cricetulus_griseus_crigri
ENSMUSG00000027593	Raly	57	90.000	ENSCVAG00000003556	raly	70	90.000	Cyprinodon_variegatus
ENSMUSG00000027593	Raly	92	90.000	ENSDARG00000059972	raly	82	78.319	Danio_rerio
ENSMUSG00000027593	Raly	100	96.454	ENSDNOG00000046782	-	100	87.162	Dasypus_novemcinctus
ENSMUSG00000027593	Raly	100	90.749	ENSDNOG00000003227	-	99	86.577	Dasypus_novemcinctus
ENSMUSG00000027593	Raly	100	99.291	ENSDORG00000013400	Raly	100	96.682	Dipodomys_ordii
ENSMUSG00000027593	Raly	96	77.169	ENSETEG00000012464	-	100	82.648	Echinops_telfairi
ENSMUSG00000027593	Raly	100	73.885	ENSETEG00000001919	-	63	76.562	Echinops_telfairi
ENSMUSG00000027593	Raly	100	99.291	ENSEASG00005008501	RALY	100	88.176	Equus_asinus_asinus
ENSMUSG00000027593	Raly	100	99.291	ENSECAG00000030217	-	100	87.821	Equus_caballus
ENSMUSG00000027593	Raly	100	99.291	ENSECAG00000012357	RALY	100	87.821	Equus_caballus
ENSMUSG00000027593	Raly	100	99.291	ENSECAG00000037642	-	100	87.821	Equus_caballus
ENSMUSG00000027593	Raly	99	78.761	ENSEEUG00000005356	RALY	100	72.756	Erinaceus_europaeus
ENSMUSG00000027593	Raly	94	81.407	ENSELUG00000011138	raly	78	73.707	Esox_lucius
ENSMUSG00000027593	Raly	100	99.291	ENSFCAG00000025252	RALY	100	88.141	Felis_catus
ENSMUSG00000027593	Raly	100	97.872	ENSFDAG00000010175	RALY	100	98.824	Fukomys_damarensis
ENSMUSG00000027593	Raly	100	76.433	ENSFHEG00000018618	raly	82	76.389	Fundulus_heteroclitus
ENSMUSG00000027593	Raly	100	62.420	ENSGMOG00000012589	raly	99	58.371	Gadus_morhua
ENSMUSG00000027593	Raly	100	80.255	ENSGALG00000033696	RALY	100	69.968	Gallus_gallus
ENSMUSG00000027593	Raly	100	72.611	ENSGACG00000003636	raly	81	69.027	Gasterosteus_aculeatus
ENSMUSG00000027593	Raly	100	78.981	ENSGAGG00000016266	RALY	83	68.896	Gopherus_agassizii
ENSMUSG00000027593	Raly	100	95.745	ENSGGOG00000022709	RALY	100	85.473	Gorilla_gorilla
ENSMUSG00000027593	Raly	100	86.525	ENSHBUG00000021321	raly	67	77.778	Haplochromis_burtoni
ENSMUSG00000027593	Raly	100	97.872	ENSHGLG00000017779	-	100	96.209	Heterocephalus_glaber_female
ENSMUSG00000027593	Raly	100	91.489	ENSHGLG00000021175	-	100	82.432	Heterocephalus_glaber_female
ENSMUSG00000027593	Raly	100	78.673	ENSHGLG00100003829	-	100	70.608	Heterocephalus_glaber_male
ENSMUSG00000027593	Raly	100	97.872	ENSHGLG00100003933	RALY	100	97.872	Heterocephalus_glaber_male
ENSMUSG00000027593	Raly	99	78.095	ENSHGLG00100000278	-	100	66.216	Heterocephalus_glaber_male
ENSMUSG00000027593	Raly	100	62.338	ENSHCOG00000012268	raly	91	54.299	Hippocampus_comes
ENSMUSG00000027593	Raly	100	99.291	ENSSTOG00000008810	RALY	100	88.782	Ictidomys_tridecemlineatus
ENSMUSG00000027593	Raly	100	97.872	ENSJJAG00000008473	Raly	100	97.872	Jaculus_jaculus
ENSMUSG00000027593	Raly	97	75.122	ENSKMAG00000015656	raly	83	75.122	Kryptolebias_marmoratus
ENSMUSG00000027593	Raly	100	77.070	ENSLBEG00000022656	raly	85	73.214	Labrus_bergylta
ENSMUSG00000027593	Raly	60	92.941	ENSLBEG00000028617	raly	93	92.941	Labrus_bergylta
ENSMUSG00000027593	Raly	100	75.796	ENSLACG00000008596	RALY	78	78.924	Latimeria_chalumnae
ENSMUSG00000027593	Raly	100	78.344	ENSLOCG00000007219	raly	79	80.717	Lepisosteus_oculatus
ENSMUSG00000027593	Raly	100	89.172	ENSLAFG00000000321	RALY	100	85.304	Loxodonta_africana
ENSMUSG00000027593	Raly	100	95.745	ENSMFAG00000033131	RALY	100	87.500	Macaca_fascicularis
ENSMUSG00000027593	Raly	100	85.987	ENSMMUG00000018093	RALY	100	86.538	Macaca_mulatta
ENSMUSG00000027593	Raly	100	95.745	ENSMNEG00000044988	RALY	100	87.162	Macaca_nemestrina
ENSMUSG00000027593	Raly	100	95.745	ENSMLEG00000028900	RALY	100	87.838	Mandrillus_leucophaeus
ENSMUSG00000027593	Raly	100	86.525	ENSMAMG00000012529	raly	62	78.049	Mastacembelus_armatus
ENSMUSG00000027593	Raly	100	85.816	ENSMZEG00005016550	raly	64	78.283	Maylandia_zebra
ENSMUSG00000027593	Raly	100	80.255	ENSMGAG00000002214	RALY	100	69.841	Meleagris_gallopavo
ENSMUSG00000027593	Raly	100	100.000	ENSMAUG00000005739	Raly	100	99.526	Mesocricetus_auratus
ENSMUSG00000027593	Raly	100	98.582	ENSMICG00000039074	RALY	100	87.162	Microcebus_murinus
ENSMUSG00000027593	Raly	100	100.000	ENSMOCG00000009450	Raly	100	95.695	Microtus_ochrogaster
ENSMUSG00000027593	Raly	100	76.433	ENSMMOG00000013788	raly	86	76.000	Mola_mola
ENSMUSG00000027593	Raly	100	75.904	ENSMODG00000002819	-	100	61.371	Monodelphis_domestica
ENSMUSG00000027593	Raly	100	77.707	ENSMALG00000007071	raly	55	77.315	Monopterus_albus
ENSMUSG00000027593	Raly	100	100.000	MGP_CAROLIEiJ_G0024519	Raly	100	100.000	Mus_caroli
ENSMUSG00000027593	Raly	100	100.000	MGP_PahariEiJ_G0025963	Raly	100	100.000	Mus_pahari
ENSMUSG00000027593	Raly	100	100.000	MGP_SPRETEiJ_G0025441	Raly	100	100.000	Mus_spretus
ENSMUSG00000027593	Raly	100	91.189	ENSMPUG00000017820	RALY	100	88.141	Mustela_putorius_furo
ENSMUSG00000027593	Raly	99	82.143	ENSMLUG00000027895	-	98	78.846	Myotis_lucifugus
ENSMUSG00000027593	Raly	100	99.291	ENSMLUG00000005330	-	100	87.500	Myotis_lucifugus
ENSMUSG00000027593	Raly	100	100.000	ENSNGAG00000001263	Raly	100	99.052	Nannospalax_galili
ENSMUSG00000027593	Raly	100	87.234	ENSNBRG00000014761	raly	67	78.283	Neolamprologus_brichardi
ENSMUSG00000027593	Raly	87	72.426	ENSNLEG00000010031	-	86	75.875	Nomascus_leucogenys
ENSMUSG00000027593	Raly	100	87.261	ENSOPRG00000008423	RALY	100	85.577	Ochotona_princeps
ENSMUSG00000027593	Raly	100	90.260	ENSODEG00000008369	-	100	82.051	Octodon_degus
ENSMUSG00000027593	Raly	84	81.461	ENSODEG00000011160	-	100	71.004	Octodon_degus
ENSMUSG00000027593	Raly	100	82.270	ENSODEG00000012831	-	100	84.772	Octodon_degus
ENSMUSG00000027593	Raly	100	77.070	ENSONIG00000004416	raly	75	76.037	Oreochromis_niloticus
ENSMUSG00000027593	Raly	100	87.898	ENSOCUG00000000477	RALY	86	87.107	Oryctolagus_cuniculus
ENSMUSG00000027593	Raly	100	87.898	ENSOGAG00000032337	RALY	100	82.372	Otolemur_garnettii
ENSMUSG00000027593	Raly	100	90.749	ENSOARG00000008957	RALY	100	87.821	Ovis_aries
ENSMUSG00000027593	Raly	100	95.745	ENSPPAG00000034951	RALY	100	86.149	Pan_paniscus
ENSMUSG00000027593	Raly	100	99.291	ENSPPRG00000014593	RALY	100	89.527	Panthera_pardus
ENSMUSG00000027593	Raly	100	99.291	ENSPTIG00000021910	RALY	100	89.527	Panthera_tigris_altaica
ENSMUSG00000027593	Raly	100	95.745	ENSPTRG00000013410	RALY	100	87.162	Pan_troglodytes
ENSMUSG00000027593	Raly	100	95.745	ENSPANG00000018093	RALY	100	87.500	Papio_anubis
ENSMUSG00000027593	Raly	100	78.981	ENSPKIG00000004894	raly	77	79.358	Paramormyrops_kingsleyae
ENSMUSG00000027593	Raly	79	91.964	ENSPSIG00000017714	RALY	96	60.000	Pelodiscus_sinensis
ENSMUSG00000027593	Raly	72	83.333	ENSPMGG00000007007	raly	94	83.333	Periophthalmus_magnuspinnatus
ENSMUSG00000027593	Raly	100	100.000	ENSPEMG00000021466	Raly	100	92.982	Peromyscus_maniculatus_bairdii
ENSMUSG00000027593	Raly	100	80.255	ENSPCIG00000011153	-	100	65.705	Phascolarctos_cinereus
ENSMUSG00000027593	Raly	63	69.663	ENSPCIG00000014019	-	100	69.663	Phascolarctos_cinereus
ENSMUSG00000027593	Raly	100	86.624	ENSPPYG00000010932	RALY	100	85.577	Pongo_abelii
ENSMUSG00000027593	Raly	99	84.071	ENSPCAG00000016867	RALY	99	79.933	Procavia_capensis
ENSMUSG00000027593	Raly	100	97.872	ENSPCOG00000016363	RALY	100	86.824	Propithecus_coquereli
ENSMUSG00000027593	Raly	100	90.749	ENSPVAG00000015827	RALY	100	87.500	Pteropus_vampyrus
ENSMUSG00000027593	Raly	100	85.106	ENSPNYG00000011247	raly	64	78.283	Pundamilia_nyererei
ENSMUSG00000027593	Raly	100	77.707	ENSPNAG00000011812	raly	79	78.027	Pygocentrus_nattereri
ENSMUSG00000027593	Raly	100	100.000	ENSRNOG00000017405	Raly	100	93.919	Rattus_norvegicus
ENSMUSG00000027593	Raly	100	95.745	ENSRBIG00000030203	RALY	100	89.298	Rhinopithecus_bieti
ENSMUSG00000027593	Raly	100	95.745	ENSRROG00000038781	RALY	100	88.963	Rhinopithecus_roxellana
ENSMUSG00000027593	Raly	100	96.454	ENSSBOG00000001418	RALY	100	89.527	Saimiri_boliviensis_boliviensis
ENSMUSG00000027593	Raly	100	88.652	ENSSHAG00000016830	RALY	100	62.903	Sarcophilus_harrisii
ENSMUSG00000027593	Raly	100	76.433	ENSSFOG00015012304	raly	81	79.817	Scleropages_formosus
ENSMUSG00000027593	Raly	100	74.522	ENSSMAG00000001107	raly	73	73.636	Scophthalmus_maximus
ENSMUSG00000027593	Raly	100	77.707	ENSSDUG00000002411	raly	73	76.959	Seriola_dumerili
ENSMUSG00000027593	Raly	55	93.506	ENSSLDG00000004903	RALY	77	93.506	Seriola_lalandi_dorsalis
ENSMUSG00000027593	Raly	100	77.707	ENSSLDG00000017872	raly	71	78.037	Seriola_lalandi_dorsalis
ENSMUSG00000027593	Raly	96	77.626	ENSSARG00000002763	-	100	65.705	Sorex_araneus
ENSMUSG00000027593	Raly	100	80.255	ENSSPUG00000006251	RALY	84	86.239	Sphenodon_punctatus
ENSMUSG00000027593	Raly	81	77.692	ENSSPAG00000022480	-	76	74.872	Stegastes_partitus
ENSMUSG00000027593	Raly	100	98.582	ENSSSCG00000007275	RALY	100	87.460	Sus_scrofa
ENSMUSG00000027593	Raly	100	78.981	ENSTGUG00000003715	RALY	100	87.037	Taeniopygia_guttata
ENSMUSG00000027593	Raly	100	78.855	ENSTBEG00000009812	RALY	100	75.080	Tupaia_belangeri
ENSMUSG00000027593	Raly	100	89.474	ENSTTRG00000006590	RALY	100	85.942	Tursiops_truncatus
ENSMUSG00000027593	Raly	100	99.291	ENSUAMG00000006993	RALY	99	87.413	Ursus_americanus
ENSMUSG00000027593	Raly	100	99.291	ENSUMAG00000024106	RALY	100	88.141	Ursus_maritimus
ENSMUSG00000027593	Raly	100	87.261	ENSVPAG00000000373	RALY	76	94.340	Vicugna_pacos
ENSMUSG00000027593	Raly	100	91.630	ENSVVUG00000004546	RALY	100	88.141	Vulpes_vulpes
ENSMUSG00000027593	Raly	100	72.941	ENSXETG00000019514	raly	79	72.926	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003712	transcription coregulator activity	27251289.	IMP	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	27251289.	IDA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	27251289.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0042632	cholesterol homeostasis	27251289.	IDA	Process
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component
GO:1903506	regulation of nucleic acid-templated transcription	27251289.	IMP	Process