EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000027642 (Gene tree)
Gene ID: 20014
Gene Symbol: Rpn2
Alias: 1300012C06Rik|Rpn-2
Full Name: ribophorin II
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 47303
Position: chr2: 157279017-157326319
Accession: 98085
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000116380	-	2756	XM_006499021	ENSMUSP00000112081	631 (aa)	XP_006499084	Q9DBG6
ENSMUST00000156007	-	565	-	-	- (aa)	-	-
ENSMUST00000125311	-	139	-	-	- (aa)	-	-
ENSMUST00000126248	-	1944	-	-	- (aa)	-	-
ENSMUST00000142463	-	424	-	-	- (aa)	-	-
ENSMUST00000141934	-	934	-	-	- (aa)	-	-
ENSMUST00000127252	-	2314	-	-	- (aa)	-	-
ENSMUST00000029171	-	2621	XM_006499023	ENSMUSP00000029171	615 (aa)	XP_006499087	A2ACG7
ENSMUST00000149924	-	832	-	-	- (aa)	-	-
ENSMUST00000123639	-	366	-	-	- (aa)	-	-
ENSMUST00000150349	-	670	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000027642's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu00510	N-Glycan biosynthesis	KEGG
mmu01100	Metabolic pathways	KEGG
mmu04141	Protein processing in endoplasmic reticulum	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000027642's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000027642	Rpn2	99	31.424	FBgn0034277	OstDelta	98	31.473	Drosophila_melanogaster
ENSMUSG00000027642	Rpn2	100	92.846	ENSG00000118705	RPN2	100	92.846	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000421	autophagosome membrane	-	ISO	Component
GO:0004579	dolichyl-diphosphooligosaccharide-protein glycotransferase activity	21873635.	IBA	Function
GO:0005783	endoplasmic reticulum	-	IEA	Component
GO:0005791	rough endoplasmic reticulum	-	ISO	Component
GO:0006487	protein N-linked glycosylation	21873635.	IBA	Process
GO:0006487	protein N-linked glycosylation	18724378.	IMP	Process
GO:0008250	oligosaccharyltransferase complex	-	IEA	Component
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0043022	ribosome binding	-	ISO	Function