EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000027651 (Gene tree)
Gene ID: 70470
Gene Symbol: Rprd1b
Alias: 2610304G08Rik|2810446G03Rik|Crept
Full Name: regulation of nuclear pre-mRNA domain containing 1B
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 103801
Position: chr2: 158028497-158132297
Accession: 1917720
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000156552	-	4179	-	-	- (aa)	-	-
ENSMUST00000135603	-	428	-	ENSMUSP00000122419	143 (aa)	-	F7DAY5
ENSMUST00000128206	-	764	-	ENSMUSP00000117807	194 (aa)	-	F6YB25
ENSMUST00000109519	-	1597	-	-	- (aa)	-	-
ENSMUST00000109518	-	4399	XM_006500162	ENSMUSP00000105144	294 (aa)	XP_006500225	Q9CSU0
ENSMUST00000152452	-	1910	-	ENSMUSP00000118434	224 (aa)	-	Q9CSU0
ENSMUST00000103123	-	4504	-	ENSMUSP00000099412	325 (aa)	-	A0A0R4J195
ENSMUST00000029180	-	4283	XM_006500163	ENSMUSP00000029180	326 (aa)	XP_006500226	Q9CSU0

Gene Model

Click here to download ENSMUSG00000027651's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000027651's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000027651	Rprd1b	100	65.846	ENSG00000141425	RPRD1A	100	65.846	Homo_sapiens
ENSMUSG00000027651	Rprd1b	61	38.686	ENSG00000163125	RPRD2	78	40.984	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000993	RNA polymerase II complex binding	21873635.	IBA	Function
GO:0000993	RNA polymerase II complex binding	-	ISO	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005813	centrosome	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0008284	positive regulation of cell proliferation	-	ISO	Process
GO:0010564	regulation of cell cycle process	-	ISO	Process
GO:0016591	RNA polymerase II, holoenzyme	21873635.	IBA	Component
GO:0016591	RNA polymerase II, holoenzyme	-	ISO	Component
GO:0031124	mRNA 3'-end processing	21873635.	IBA	Process
GO:0042802	identical protein binding	-	ISO	Function
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0070940	dephosphorylation of RNA polymerase II C-terminal domain	-	ISO	Process