EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000027663 (Gene tree)
Gene ID: 22401
Gene Symbol: Zmat3
Alias: Wig1
Full Name: zinc finger matrin type 3
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 31223 bases
Position: chr3:32334792-32366014
Accession: 1195270
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000029199	zf-met	PF12874.7	2e-23	1	3
ENSMUSP00000029199	zf-met	PF12874.7	2e-23	2	3
ENSMUSP00000029199	zf-met	PF12874.7	2e-23	3	3
ENSMUSP00000131317	zf-met	PF12874.7	2e-23	1	3
ENSMUSP00000131317	zf-met	PF12874.7	2e-23	2	3
ENSMUSP00000131317	zf-met	PF12874.7	2e-23	3	3
ENSMUSP00000029199	zf-C2H2_jaz	PF12171.8	4.7e-21	1	3
ENSMUSP00000029199	zf-C2H2_jaz	PF12171.8	4.7e-21	2	3
ENSMUSP00000029199	zf-C2H2_jaz	PF12171.8	4.7e-21	3	3
ENSMUSP00000131317	zf-C2H2_jaz	PF12171.8	4.7e-21	1	3
ENSMUSP00000131317	zf-C2H2_jaz	PF12171.8	4.7e-21	2	3
ENSMUSP00000131317	zf-C2H2_jaz	PF12171.8	4.7e-21	3	3

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000195055	-	3813	-	-	- (aa)	-	-
ENSMUST00000139660	-	440	-	ENSMUSP00000141511	29 (aa)	-	A0A0A6YWE0
ENSMUST00000029199	-	7797	-	ENSMUSP00000029199	290 (aa)	-	B9EI21
ENSMUST00000168566	-	7672	XM_006535441	ENSMUSP00000131317	290 (aa)	XP_006535504	B9EI21

Gene Model

Click here to download ENSMUSG00000027663's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04115	p53 signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000027663's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000027663	Zmat3	74	35.172	ENSMUSG00000037492	Zmat4	84	35.172

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000027663	Zmat3	99	87.197	ENSG00000172667	ZMAT3	100	87.197	Homo_sapiens
ENSMUSG00000027663	Zmat3	80	67.811	ENSAPOG00000015037	zmat3	96	60.563	Acanthochromis_polyacanthus
ENSMUSG00000027663	Zmat3	99	88.276	ENSAMEG00000010742	ZMAT3	100	88.276	Ailuropoda_melanoleuca
ENSMUSG00000027663	Zmat3	93	62.593	ENSACIG00000023037	zmat3	85	62.593	Amphilophus_citrinellus
ENSMUSG00000027663	Zmat3	78	68.996	ENSAOCG00000017955	zmat3	77	68.996	Amphiprion_ocellaris
ENSMUSG00000027663	Zmat3	80	68.240	ENSAPEG00000014553	zmat3	81	68.240	Amphiprion_percula
ENSMUSG00000027663	Zmat3	94	62.044	ENSATEG00000022244	zmat3	97	62.044	Anabas_testudineus
ENSMUSG00000027663	Zmat3	100	76.632	ENSAPLG00000013292	ZMAT3	100	76.632	Anas_platyrhynchos
ENSMUSG00000027663	Zmat3	93	75.646	ENSACAG00000005005	ZMAT3	100	74.061	Anolis_carolinensis
ENSMUSG00000027663	Zmat3	94	82.482	ENSANAG00000035673	ZMAT3	96	83.212	Aotus_nancymaae
ENSMUSG00000027663	Zmat3	78	69.163	ENSACLG00000026272	zmat3	78	69.163	Astatotilapia_calliptera
ENSMUSG00000027663	Zmat3	85	67.578	ENSAMXG00000009798	zmat3	70	67.578	Astyanax_mexicanus
ENSMUSG00000027663	Zmat3	99	86.207	ENSBTAG00000012463	ZMAT3	100	86.552	Bos_taurus
ENSMUSG00000027663	Zmat3	99	83.448	ENSCJAG00000013399	ZMAT3	100	84.138	Callithrix_jacchus
ENSMUSG00000027663	Zmat3	99	86.897	ENSCAFG00000011081	ZMAT3	100	87.586	Canis_familiaris
ENSMUSG00000027663	Zmat3	99	86.897	ENSCAFG00020023107	ZMAT3	100	87.586	Canis_lupus_dingo
ENSMUSG00000027663	Zmat3	99	87.197	ENSCHIG00000025074	ZMAT3	100	87.197	Capra_hircus
ENSMUSG00000027663	Zmat3	99	84.083	ENSTSYG00000026546	ZMAT3	100	86.159	Carlito_syrichta
ENSMUSG00000027663	Zmat3	99	86.159	ENSCAPG00000014645	ZMAT3	99	86.159	Cavia_aperea
ENSMUSG00000027663	Zmat3	99	86.159	ENSCPOG00000003865	ZMAT3	100	86.159	Cavia_porcellus
ENSMUSG00000027663	Zmat3	99	81.379	ENSCCAG00000036721	ZMAT3	100	83.448	Cebus_capucinus
ENSMUSG00000027663	Zmat3	99	74.394	ENSCATG00000025137	ZMAT3	100	74.394	Cercocebus_atys
ENSMUSG00000027663	Zmat3	99	86.159	ENSCLAG00000013464	ZMAT3	100	86.159	Chinchilla_lanigera
ENSMUSG00000027663	Zmat3	99	86.505	ENSCSAG00000012935	ZMAT3	100	86.505	Chlorocebus_sabaeus
ENSMUSG00000027663	Zmat3	99	85.813	ENSCHOG00000005591	ZMAT3	100	85.813	Choloepus_hoffmanni
ENSMUSG00000027663	Zmat3	100	73.973	ENSCPBG00000026917	ZMAT3	100	73.973	Chrysemys_picta_bellii
ENSMUSG00000027663	Zmat3	99	86.207	ENSCANG00000029476	ZMAT3	100	86.207	Colobus_angolensis_palliatus
ENSMUSG00000027663	Zmat3	100	93.814	ENSCGRG00001012339	Zmat3	100	93.814	Cricetulus_griseus_chok1gshd
ENSMUSG00000027663	Zmat3	100	93.814	ENSCGRG00000011491	Zmat3	100	93.814	Cricetulus_griseus_crigri
ENSMUSG00000027663	Zmat3	96	59.184	ENSCSEG00000019463	zmat3	77	67.932	Cynoglossus_semilaevis
ENSMUSG00000027663	Zmat3	78	67.241	ENSCVAG00000011847	zmat3	78	67.241	Cyprinodon_variegatus
ENSMUSG00000027663	Zmat3	83	67.068	ENSDARG00000080021	zmat3	94	64.312	Danio_rerio
ENSMUSG00000027663	Zmat3	99	85.862	ENSDNOG00000012284	ZMAT3	100	85.862	Dasypus_novemcinctus
ENSMUSG00000027663	Zmat3	99	85.813	ENSDORG00000011801	Zmat3	100	85.813	Dipodomys_ordii
ENSMUSG00000027663	Zmat3	81	76.596	ENSETEG00000008883	ZMAT3	100	76.596	Echinops_telfairi
ENSMUSG00000027663	Zmat3	99	87.543	ENSEASG00005016887	ZMAT3	100	87.543	Equus_asinus_asinus
ENSMUSG00000027663	Zmat3	99	86.851	ENSECAG00000012784	ZMAT3	100	86.851	Equus_caballus
ENSMUSG00000027663	Zmat3	99	76.552	ENSEEUG00000001126	ZMAT3	100	76.552	Erinaceus_europaeus
ENSMUSG00000027663	Zmat3	86	67.054	ENSELUG00000010132	zmat3	78	61.565	Esox_lucius
ENSMUSG00000027663	Zmat3	99	88.581	ENSFCAG00000014578	ZMAT3	100	88.581	Felis_catus
ENSMUSG00000027663	Zmat3	100	75.945	ENSFALG00000008403	ZMAT3	100	75.945	Ficedula_albicollis
ENSMUSG00000027663	Zmat3	99	84.828	ENSFDAG00000013376	ZMAT3	100	84.828	Fukomys_damarensis
ENSMUSG00000027663	Zmat3	96	58.423	ENSFHEG00000003221	zmat3	81	65.812	Fundulus_heteroclitus
ENSMUSG00000027663	Zmat3	80	67.949	ENSGMOG00000008558	zmat3	96	67.949	Gadus_morhua
ENSMUSG00000027663	Zmat3	100	76.289	ENSGALG00000040948	ZMAT3	100	76.289	Gallus_gallus
ENSMUSG00000027663	Zmat3	52	64.052	ENSGAFG00000010485	zmat3	52	64.052	Gambusia_affinis
ENSMUSG00000027663	Zmat3	80	66.094	ENSGACG00000006175	zmat3	89	66.094	Gasterosteus_aculeatus
ENSMUSG00000027663	Zmat3	100	74.315	ENSGAGG00000009275	ZMAT3	100	74.315	Gopherus_agassizii
ENSMUSG00000027663	Zmat3	99	87.197	ENSGGOG00000009975	ZMAT3	100	87.197	Gorilla_gorilla
ENSMUSG00000027663	Zmat3	99	58.763	ENSHBUG00000004401	zmat3	99	58.763	Haplochromis_burtoni
ENSMUSG00000027663	Zmat3	99	85.813	ENSHGLG00000011523	ZMAT3	100	85.813	Heterocephalus_glaber_female
ENSMUSG00000027663	Zmat3	99	85.813	ENSHGLG00100012235	ZMAT3	100	85.813	Heterocephalus_glaber_male
ENSMUSG00000027663	Zmat3	97	59.507	ENSHCOG00000010624	zmat3	83	59.507	Hippocampus_comes
ENSMUSG00000027663	Zmat3	93	63.504	ENSIPUG00000003043	zmat3	99	63.504	Ictalurus_punctatus
ENSMUSG00000027663	Zmat3	99	85.121	ENSSTOG00000028436	ZMAT3	100	88.581	Ictidomys_tridecemlineatus
ENSMUSG00000027663	Zmat3	99	86.505	ENSJJAG00000004288	Zmat3	100	86.505	Jaculus_jaculus
ENSMUSG00000027663	Zmat3	80	66.524	ENSKMAG00000008962	zmat3	97	61.710	Kryptolebias_marmoratus
ENSMUSG00000027663	Zmat3	96	61.786	ENSLBEG00000001993	zmat3	95	61.786	Labrus_bergylta
ENSMUSG00000027663	Zmat3	96	59.603	ENSLACG00000015780	ZMAT3	77	63.448	Latimeria_chalumnae
ENSMUSG00000027663	Zmat3	84	69.960	ENSLOCG00000001108	zmat3	87	60.938	Lepisosteus_oculatus
ENSMUSG00000027663	Zmat3	99	85.862	ENSLAFG00000000897	ZMAT3	100	85.862	Loxodonta_africana
ENSMUSG00000027663	Zmat3	99	86.159	ENSMFAG00000021292	ZMAT3	100	86.159	Macaca_fascicularis
ENSMUSG00000027663	Zmat3	99	85.862	ENSMMUG00000003216	ZMAT3	100	85.862	Macaca_mulatta
ENSMUSG00000027663	Zmat3	99	86.207	ENSMNEG00000036725	ZMAT3	100	86.207	Macaca_nemestrina
ENSMUSG00000027663	Zmat3	99	86.505	ENSMLEG00000026279	ZMAT3	100	86.505	Mandrillus_leucophaeus
ENSMUSG00000027663	Zmat3	96	59.386	ENSMAMG00000012349	zmat3	74	68.398	Mastacembelus_armatus
ENSMUSG00000027663	Zmat3	88	63.320	ENSMZEG00005015427	zmat3	87	63.320	Maylandia_zebra
ENSMUSG00000027663	Zmat3	100	76.976	ENSMGAG00000009873	ZMAT3	100	76.976	Meleagris_gallopavo
ENSMUSG00000027663	Zmat3	100	94.138	ENSMAUG00000001986	Zmat3	100	94.138	Mesocricetus_auratus
ENSMUSG00000027663	Zmat3	99	86.505	ENSMICG00000049501	ZMAT3	100	86.505	Microcebus_murinus
ENSMUSG00000027663	Zmat3	99	95.502	ENSMOCG00000018844	Zmat3	100	95.502	Microtus_ochrogaster
ENSMUSG00000027663	Zmat3	86	64.516	ENSMMOG00000001603	zmat3	84	59.928	Mola_mola
ENSMUSG00000027663	Zmat3	96	68.571	ENSMODG00000021308	ZMAT3	94	71.429	Monodelphis_domestica
ENSMUSG00000027663	Zmat3	96	60.714	ENSMALG00000019683	zmat3	95	60.714	Monopterus_albus
ENSMUSG00000027663	Zmat3	100	99.655	MGP_CAROLIEiJ_G0024914	Zmat3	100	99.655	Mus_caroli
ENSMUSG00000027663	Zmat3	100	98.282	MGP_PahariEiJ_G0026359	Zmat3	100	98.282	Mus_pahari
ENSMUSG00000027663	Zmat3	100	99.655	MGP_SPRETEiJ_G0025848	Zmat3	100	99.655	Mus_spretus
ENSMUSG00000027663	Zmat3	99	87.889	ENSMPUG00000017206	ZMAT3	100	87.889	Mustela_putorius_furo
ENSMUSG00000027663	Zmat3	99	85.274	ENSMLUG00000013074	ZMAT3	100	85.274	Myotis_lucifugus
ENSMUSG00000027663	Zmat3	100	88.966	ENSNGAG00000023602	Zmat3	100	88.966	Nannospalax_galili
ENSMUSG00000027663	Zmat3	99	58.763	ENSNBRG00000020886	zmat3	99	58.763	Neolamprologus_brichardi
ENSMUSG00000027663	Zmat3	99	86.552	ENSNLEG00000005658	ZMAT3	100	86.552	Nomascus_leucogenys
ENSMUSG00000027663	Zmat3	99	70.205	ENSMEUG00000015724	ZMAT3	100	71.918	Notamacropus_eugenii
ENSMUSG00000027663	Zmat3	99	83.045	ENSODEG00000003313	ZMAT3	100	85.467	Octodon_degus
ENSMUSG00000027663	Zmat3	100	58.389	ENSONIG00000008388	zmat3	100	58.389	Oreochromis_niloticus
ENSMUSG00000027663	Zmat3	76	69.683	ENSOANG00000009901	ZMAT3	84	69.683	Ornithorhynchus_anatinus
ENSMUSG00000027663	Zmat3	99	86.851	ENSOCUG00000004658	ZMAT3	100	86.851	Oryctolagus_cuniculus
ENSMUSG00000027663	Zmat3	92	63.004	ENSOMEG00000011303	zmat3	86	63.004	Oryzias_melastigma
ENSMUSG00000027663	Zmat3	99	86.207	ENSOGAG00000003252	ZMAT3	100	86.207	Otolemur_garnettii
ENSMUSG00000027663	Zmat3	99	86.897	ENSOARG00000020713	ZMAT3	100	86.897	Ovis_aries
ENSMUSG00000027663	Zmat3	99	87.197	ENSPPAG00000035483	ZMAT3	100	87.197	Pan_paniscus
ENSMUSG00000027663	Zmat3	99	88.621	ENSPPRG00000004407	ZMAT3	100	88.621	Panthera_pardus
ENSMUSG00000027663	Zmat3	99	88.621	ENSPTIG00000009929	ZMAT3	100	88.621	Panthera_tigris_altaica
ENSMUSG00000027663	Zmat3	99	86.897	ENSPTRG00000015641	ZMAT3	100	86.897	Pan_troglodytes
ENSMUSG00000027663	Zmat3	99	86.207	ENSPANG00000023167	ZMAT3	100	86.207	Papio_anubis
ENSMUSG00000027663	Zmat3	83	71.721	ENSPKIG00000023370	zmat3	75	66.304	Paramormyrops_kingsleyae
ENSMUSG00000027663	Zmat3	100	75.768	ENSPSIG00000014839	ZMAT3	100	75.768	Pelodiscus_sinensis
ENSMUSG00000027663	Zmat3	94	59.273	ENSPMGG00000023924	zmat3	97	59.273	Periophthalmus_magnuspinnatus
ENSMUSG00000027663	Zmat3	100	92.759	ENSPEMG00000019154	Zmat3	100	92.759	Peromyscus_maniculatus_bairdii
ENSMUSG00000027663	Zmat3	78	64.315	ENSPFOG00000019206	zmat3	78	55.375	Poecilia_formosa
ENSMUSG00000027663	Zmat3	96	60.357	ENSPLAG00000022572	zmat3	95	60.357	Poecilia_latipinna
ENSMUSG00000027663	Zmat3	78	64.474	ENSPMEG00000004131	-	95	57.194	Poecilia_mexicana
ENSMUSG00000027663	Zmat3	78	67.391	ENSPREG00000022632	zmat3	81	67.391	Poecilia_reticulata
ENSMUSG00000027663	Zmat3	99	86.552	ENSPPYG00000014315	ZMAT3	100	86.552	Pongo_abelii
ENSMUSG00000027663	Zmat3	99	82.474	ENSPCAG00000008585	ZMAT3	100	82.474	Procavia_capensis
ENSMUSG00000027663	Zmat3	99	86.159	ENSPCOG00000022835	ZMAT3	100	86.159	Propithecus_coquereli
ENSMUSG00000027663	Zmat3	99	87.241	ENSPVAG00000004489	ZMAT3	100	87.241	Pteropus_vampyrus
ENSMUSG00000027663	Zmat3	99	58.763	ENSPNYG00000014350	zmat3	99	58.763	Pundamilia_nyererei
ENSMUSG00000027663	Zmat3	86	66.279	ENSPNAG00000015664	zmat3	70	66.279	Pygocentrus_nattereri
ENSMUSG00000027663	Zmat3	100	98.276	ENSRNOG00000010119	Zmat3	100	98.276	Rattus_norvegicus
ENSMUSG00000027663	Zmat3	99	86.159	ENSRBIG00000029622	ZMAT3	100	86.159	Rhinopithecus_bieti
ENSMUSG00000027663	Zmat3	99	85.862	ENSRROG00000038345	ZMAT3	100	85.862	Rhinopithecus_roxellana
ENSMUSG00000027663	Zmat3	99	82.069	ENSSBOG00000033332	ZMAT3	100	83.045	Saimiri_boliviensis_boliviensis
ENSMUSG00000027663	Zmat3	99	68.151	ENSSHAG00000016154	ZMAT3	100	70.890	Sarcophilus_harrisii
ENSMUSG00000027663	Zmat3	83	73.859	ENSSFOG00015006984	zmat3	93	68.705	Scleropages_formosus
ENSMUSG00000027663	Zmat3	78	67.083	ENSSMAG00000019540	-	52	67.083	Scophthalmus_maximus
ENSMUSG00000027663	Zmat3	86	65.354	ENSSDUG00000016188	zmat3	74	65.354	Seriola_dumerili
ENSMUSG00000027663	Zmat3	86	65.354	ENSSLDG00000018611	zmat3	74	65.354	Seriola_lalandi_dorsalis
ENSMUSG00000027663	Zmat3	76	83.182	ENSSARG00000004901	ZMAT3	100	83.182	Sorex_araneus
ENSMUSG00000027663	Zmat3	100	76.897	ENSSPUG00000014753	ZMAT3	100	77.586	Sphenodon_punctatus
ENSMUSG00000027663	Zmat3	78	68.996	ENSSPAG00000011062	zmat3	69	68.996	Stegastes_partitus
ENSMUSG00000027663	Zmat3	99	87.197	ENSSSCG00000033860	ZMAT3	100	87.197	Sus_scrofa
ENSMUSG00000027663	Zmat3	100	75.945	ENSTGUG00000010765	-	100	75.945	Taeniopygia_guttata
ENSMUSG00000027663	Zmat3	81	67.234	ENSTRUG00000004788	zmat3	97	62.143	Takifugu_rubripes
ENSMUSG00000027663	Zmat3	86	62.550	ENSTNIG00000006781	zmat3	87	62.550	Tetraodon_nigroviridis
ENSMUSG00000027663	Zmat3	76	89.937	ENSTBEG00000012359	ZMAT3	100	89.937	Tupaia_belangeri
ENSMUSG00000027663	Zmat3	99	83.793	ENSTTRG00000004923	ZMAT3	100	83.793	Tursiops_truncatus
ENSMUSG00000027663	Zmat3	99	87.586	ENSUAMG00000007623	ZMAT3	100	87.586	Ursus_americanus
ENSMUSG00000027663	Zmat3	99	88.235	ENSUMAG00000007847	ZMAT3	100	88.235	Ursus_maritimus
ENSMUSG00000027663	Zmat3	99	87.586	ENSVPAG00000006611	ZMAT3	100	87.586	Vicugna_pacos
ENSMUSG00000027663	Zmat3	99	87.241	ENSVVUG00000004729	ZMAT3	100	87.931	Vulpes_vulpes
ENSMUSG00000027663	Zmat3	85	71.255	ENSXETG00000007251	zmat3	84	71.255	Xenopus_tropicalis
ENSMUSG00000027663	Zmat3	93	60.219	ENSXCOG00000008397	zmat3	97	60.219	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006915	apoptotic process	-	IEA	Process
GO:0006974	cellular response to DNA damage stimulus	-	IEA	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0015031	protein transport	-	IEA	Process
GO:0030308	negative regulation of cell growth	12135743.	TAS	Process
GO:0040008	regulation of growth	-	IEA	Process
GO:0043065	positive regulation of apoptotic process	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function