EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000193231	-	539	-	ENSMUSP00000141657	54 (aa)	-	A0A0A6YWR1
ENSMUST00000194781	-	831	-	ENSMUSP00000141543	245 (aa)	-	A0A0A6YWG8
ENSMUST00000194226	-	1457	-	-	- (aa)	-	-
ENSMUST00000135400	-	632	-	-	- (aa)	-	-
ENSMUST00000193615	-	635	-	ENSMUSP00000141354	77 (aa)	-	A0A0A6YW15
ENSMUST00000029214	-	2010	XM_006535503	ENSMUSP00000029214	429 (aa)	XP_006535566	Q9Z2N8
ENSMUST00000126144	-	922	-	ENSMUSP00000114317	204 (aa)	-	D3YVN1
ENSMUST00000153779	-	1112	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu04714	Thermogenesis	KEGG
mmu05225	Hepatocellular carcinoma	KEGG

Protein-Protein Interaction (PPI)

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001825	blastocyst formation	27869233.	IMP	Process
GO:0003682	chromatin binding	9845365.	IDA	Function
GO:0005515	protein binding	17640523.	IPI	Function
GO:0005634	nucleus	12437990.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006310	DNA recombination	-	IEA	Process
GO:0006325	chromatin organization	-	IEA	Process
GO:0006338	chromatin remodeling	9845365.	IDA	Process
GO:0006338	chromatin remodeling	-	ISO	Process
GO:0006974	cellular response to DNA damage stimulus	-	IEA	Process
GO:0007399	nervous system development	17640523.	IMP	Process
GO:0016514	SWI/SNF complex	29374058.	IDA	Component
GO:0016514	SWI/SNF complex	-	ISO	Component
GO:0031011	Ino80 complex	-	ISO	Component
GO:0035267	NuA4 histone acetyltransferase complex	-	ISO	Component
GO:0040008	regulation of growth	-	IEA	Process
GO:0043044	ATP-dependent chromatin remodeling	-	IEA	Process
GO:0043967	histone H4 acetylation	-	ISO	Process
GO:0043968	histone H2A acetylation	-	ISO	Process
GO:0071564	npBAF complex	17640523.23785148.	IDA	Component
GO:0071564	npBAF complex	-	ISO	Component